Wall clock time and date at job start Sun Mar 29 2020 21:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99849 * 2 1 4 4 C 1.53000 * 109.47009 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.50375 * 55.07974 * 4 3 2 6 6 C 1.53098 * 109.50809 * 175.21555 * 4 3 2 7 7 N 1.47015 * 109.25723 * 176.78340 * 6 4 3 8 8 C 1.46898 * 110.99642 * 177.60943 * 7 6 4 9 9 C 1.53005 * 109.46842 * 189.68284 * 8 7 6 10 10 C 1.50697 * 109.46937 * 179.97438 * 9 8 7 11 11 H 1.08005 * 120.00284 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99836 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00082 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99868 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47211 * 359.97438 * 14 12 10 16 16 H 1.48489 * 109.47281 * 119.99720 * 14 12 10 17 17 H 1.48503 * 109.46877 * 239.99864 * 14 12 10 18 18 C 1.47016 * 110.75095 * 301.38182 * 7 6 4 19 19 C 1.53097 * 109.25580 * 58.61926 * 18 7 6 20 20 O 1.43014 * 109.26075 * 303.14382 * 19 18 7 21 21 H 1.09002 * 109.47717 * 300.00347 * 1 2 3 22 22 H 1.09003 * 109.46888 * 60.00178 * 1 2 3 23 23 H 1.08998 * 109.47521 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46991 * 59.99729 * 3 2 1 25 25 H 1.08994 * 109.46754 * 299.99281 * 3 2 1 26 26 H 1.08999 * 109.50538 * 56.84991 * 6 4 3 27 27 H 1.09004 * 109.50523 * 296.71821 * 6 4 3 28 28 H 1.09001 * 109.46967 * 309.67641 * 8 7 6 29 29 H 1.08991 * 109.47385 * 69.67955 * 8 7 6 30 30 H 1.09001 * 109.46814 * 299.99450 * 9 8 7 31 31 H 1.09000 * 109.47304 * 59.99407 * 9 8 7 32 32 H 0.97000 * 119.99784 * 180.02562 * 13 12 10 33 33 H 1.09000 * 109.50136 * 178.55325 * 18 7 6 34 34 H 1.08996 * 109.50988 * 298.64163 * 18 7 6 35 35 H 1.08999 * 109.50517 * 63.08608 * 19 18 7 36 36 H 1.09005 * 109.50389 * 183.17021 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8521 0.5695 -0.8416 6 6 4.1587 2.5779 -0.1197 7 7 5.6222 2.4628 -0.0410 8 6 6.2631 3.7738 -0.2094 9 6 7.7738 3.5869 -0.3635 10 6 8.4312 4.9318 -0.5369 11 1 7.8315 5.8300 -0.5376 12 6 9.7983 5.0155 -0.6958 13 7 10.5286 3.9217 -0.6955 14 14 10.6133 6.6827 -0.9100 15 1 9.5790 7.7476 -0.8738 16 1 11.5885 6.9017 0.1882 17 1 11.3202 6.7240 -2.2153 18 6 6.0281 1.8368 1.2257 19 6 5.3861 0.4510 1.3326 20 8 3.9659 0.5793 1.2228 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.6885 1.8464 0.8900 25 1 1.6886 1.8463 -0.8900 26 1 3.7990 3.2090 0.6930 27 1 3.8792 3.0202 -1.0760 28 1 5.8647 4.2614 -1.0992 29 1 6.0608 4.3922 0.6651 30 1 8.1722 3.0994 0.5262 31 1 7.9761 2.9685 -1.2380 32 1 11.4903 3.9807 -0.8069 33 1 7.1133 1.7382 1.2516 34 1 5.6989 2.4563 2.0599 35 1 5.7574 -0.1850 0.5290 36 1 5.6386 0.0061 2.2951 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610215604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:15 Heat of formation + Delta-G solvation = -92.906175 kcal Electronic energy + Delta-G solvation = -16273.933125 eV Core-core repulsion = 13565.190631 eV Total energy + Delta-G solvation = -2708.742494 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.51629 -37.68060 -35.66724 -33.00391 -32.06373 -29.95883 -28.09769 -26.58562 -25.02789 -23.63536 -22.61415 -20.47941 -19.85525 -16.77802 -16.53367 -16.43908 -15.83393 -15.38296 -14.95451 -14.75458 -14.54950 -13.99836 -13.85502 -13.36067 -12.62891 -12.46568 -12.18900 -11.79006 -11.66403 -11.40301 -11.10097 -10.97221 -10.89951 -10.56627 -10.32531 -9.91763 -9.80711 -9.61551 -9.19640 -9.13008 -8.35845 -7.84546 -6.02002 -4.04586 3.29823 3.37257 3.40972 3.54611 3.84938 4.33723 4.50584 4.95509 5.06341 5.14982 5.18384 5.24004 5.31259 5.34041 5.37333 5.47512 5.49052 5.58214 5.71041 5.77546 6.01356 6.13270 6.22165 6.33305 6.42629 6.90233 7.01423 7.33346 7.38250 7.47097 7.73837 7.84784 8.03884 8.40080 9.02546 9.59280 11.09394 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.062793 B = 0.004631 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.799373 B = 6044.908936 C = 6335.099507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.071 3.929 4 C 0.096 3.904 5 H 0.074 0.926 6 C 0.026 3.974 7 N -0.536 5.536 8 C 0.063 3.937 9 C 0.027 3.973 10 C -0.522 4.522 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.017 3.983 19 C 0.065 3.935 20 O -0.379 6.379 21 H 0.040 0.960 22 H 0.039 0.961 23 H 0.084 0.916 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.021 0.979 30 H 0.017 0.983 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.098 0.902 34 H 0.036 0.964 35 H 0.059 0.941 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.322 -5.720 2.191 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.006 4.006 4 C 0.038 3.962 5 H 0.092 0.908 6 C -0.103 4.103 7 N -0.261 5.261 8 C -0.063 4.063 9 C -0.010 4.010 10 C -0.561 4.561 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.112 4.112 19 C -0.012 4.012 20 O -0.298 6.298 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.103 0.897 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.001 -6.303 1.934 17.306 hybrid contribution 0.297 1.830 0.344 1.885 sum -15.705 -4.473 2.278 16.487 Atomic orbital electron populations 1.22732 0.81333 1.02661 0.99805 1.87949 1.19318 1.27490 1.95363 1.22517 0.92158 0.85143 1.00807 1.22076 0.91762 0.93802 0.88548 0.90808 1.22630 0.90135 0.95822 1.01687 1.62308 1.04820 1.25423 1.33514 1.22375 0.98744 0.86214 0.98991 1.19105 0.87060 0.97065 0.97753 1.21215 0.92184 0.92879 1.49847 0.92731 1.24998 0.97485 0.96514 0.95327 1.69980 1.05790 1.27174 1.50220 0.86530 0.79435 0.84267 0.77720 1.19783 1.21016 1.20958 1.22822 1.02383 0.95312 0.90651 1.22698 0.80256 0.96224 1.02051 1.87969 1.22245 1.81340 1.38269 0.94166 0.94208 0.89699 0.92592 0.91738 0.94471 0.89894 0.91899 0.96027 0.96451 0.95632 0.93011 0.88419 0.94596 0.92295 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.00 10.67 -39.95 -0.43 -5.42 16 3 C 0.07 0.85 5.61 37.16 0.21 1.06 16 4 C 0.10 1.40 3.09 -26.68 -0.08 1.32 16 5 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 6 C 0.03 0.40 4.93 -3.71 -0.02 0.38 16 7 N -0.54 -9.97 4.73 -234.31 -1.11 -11.07 16 8 C 0.06 1.34 4.89 -3.82 -0.02 1.32 16 9 C 0.03 0.71 4.90 -27.88 -0.14 0.58 16 10 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 11 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 14 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 C 0.02 0.29 5.43 -3.71 -0.02 0.27 16 19 C 0.06 0.98 7.01 37.21 0.26 1.24 16 20 O -0.38 -6.12 10.44 -39.95 -0.42 -6.54 16 21 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 22 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 28 H 0.06 1.30 8.04 -51.93 -0.42 0.88 16 29 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.02 0.47 6.51 -51.93 -0.34 0.13 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.10 1.83 6.37 -51.93 -0.33 1.50 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 294.16 15.07 4.43 4.43 Total: -1.00 -31.42 294.16 -7.03 -38.45 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -6.12 Total: -4.44 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 0.89 Total: -5.95 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.37 Total: -37.10 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.84 Total: -11.96 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.42 -7.03 -38.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610215604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.453 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds