Wall clock time and date at job start Sun Mar 29 2020 21:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99849 * 2 1 4 4 C 1.53000 * 109.47009 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.50375 * 55.07974 * 4 3 2 6 6 C 1.53098 * 109.50809 * 175.21555 * 4 3 2 7 7 N 1.47015 * 109.25723 * 176.78340 * 6 4 3 8 8 C 1.46898 * 110.99642 * 177.60943 * 7 6 4 9 9 C 1.53005 * 109.46842 * 189.68284 * 8 7 6 10 10 C 1.50697 * 109.46937 * 179.97438 * 9 8 7 11 11 H 1.08005 * 120.00284 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99836 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00082 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99868 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47211 * 359.97438 * 14 12 10 16 16 H 1.48489 * 109.47281 * 119.99720 * 14 12 10 17 17 H 1.48503 * 109.46877 * 239.99864 * 14 12 10 18 18 C 1.47016 * 110.75095 * 301.38182 * 7 6 4 19 19 C 1.53097 * 109.25580 * 58.61926 * 18 7 6 20 20 O 1.43014 * 109.26075 * 303.14382 * 19 18 7 21 21 H 1.09002 * 109.47717 * 300.00347 * 1 2 3 22 22 H 1.09003 * 109.46888 * 60.00178 * 1 2 3 23 23 H 1.08998 * 109.47521 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46991 * 59.99729 * 3 2 1 25 25 H 1.08994 * 109.46754 * 299.99281 * 3 2 1 26 26 H 1.08999 * 109.50538 * 56.84991 * 6 4 3 27 27 H 1.09004 * 109.50523 * 296.71821 * 6 4 3 28 28 H 1.09001 * 109.46967 * 309.67641 * 8 7 6 29 29 H 1.08991 * 109.47385 * 69.67955 * 8 7 6 30 30 H 1.09001 * 109.46814 * 299.99450 * 9 8 7 31 31 H 1.09000 * 109.47304 * 59.99407 * 9 8 7 32 32 H 0.97000 * 119.99784 * 180.02562 * 13 12 10 33 33 H 1.09000 * 109.50136 * 178.55325 * 18 7 6 34 34 H 1.08996 * 109.50988 * 298.64163 * 18 7 6 35 35 H 1.08999 * 109.50517 * 63.08608 * 19 18 7 36 36 H 1.09005 * 109.50389 * 183.17021 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8521 0.5695 -0.8416 6 6 4.1587 2.5779 -0.1197 7 7 5.6222 2.4628 -0.0410 8 6 6.2631 3.7738 -0.2094 9 6 7.7738 3.5869 -0.3635 10 6 8.4312 4.9318 -0.5369 11 1 7.8315 5.8300 -0.5376 12 6 9.7983 5.0155 -0.6958 13 7 10.5286 3.9217 -0.6955 14 14 10.6133 6.6827 -0.9100 15 1 9.5790 7.7476 -0.8738 16 1 11.5885 6.9017 0.1882 17 1 11.3202 6.7240 -2.2153 18 6 6.0281 1.8368 1.2257 19 6 5.3861 0.4510 1.3326 20 8 3.9659 0.5793 1.2228 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.6885 1.8464 0.8900 25 1 1.6886 1.8463 -0.8900 26 1 3.7990 3.2090 0.6930 27 1 3.8792 3.0202 -1.0760 28 1 5.8647 4.2614 -1.0992 29 1 6.0608 4.3922 0.6651 30 1 8.1722 3.0994 0.5262 31 1 7.9761 2.9685 -1.2380 32 1 11.4903 3.9807 -0.8069 33 1 7.1133 1.7382 1.2516 34 1 5.6989 2.4563 2.0599 35 1 5.7574 -0.1850 0.5290 36 1 5.6386 0.0061 2.2951 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610215604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:14 Heat of formation + Delta-G solvation = -115.773931 kcal Electronic energy + Delta-G solvation = -16274.924745 eV Core-core repulsion = 13565.190631 eV Total energy + Delta-G solvation = -2709.734114 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.77350 -38.63669 -37.15227 -35.04880 -33.24447 -31.81715 -29.31657 -27.76814 -26.39172 -25.15244 -24.01681 -22.00937 -21.33876 -18.65397 -17.72988 -17.43003 -17.20790 -16.55639 -16.42674 -16.16360 -15.94224 -15.43952 -15.08212 -14.80140 -14.27780 -14.12108 -13.36451 -13.23000 -12.98688 -12.87470 -12.59289 -12.48882 -12.39233 -12.01648 -11.87838 -11.62801 -11.34703 -11.25288 -10.64351 -10.59569 -10.54264 -9.32878 -8.20859 -6.32199 1.40603 1.40869 1.54104 2.38650 2.59349 2.70850 3.10530 3.12860 3.91338 3.98748 4.02721 4.06652 4.18101 4.30576 4.39671 4.50141 4.53793 4.57308 4.59637 4.62643 4.67151 4.83963 4.86829 4.89734 4.97663 5.05331 5.43362 5.61343 5.74801 6.00546 6.09077 6.13692 6.26934 6.28260 6.84738 7.37040 8.91454 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.062793 B = 0.004631 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.799373 B = 6044.908936 C = 6335.099507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.075 3.925 4 C 0.095 3.905 5 H 0.064 0.936 6 C 0.029 3.971 7 N -0.550 5.550 8 C 0.080 3.920 9 C 0.035 3.965 10 C -0.544 4.544 11 H 0.061 0.939 12 C 0.001 3.999 13 N -0.931 5.931 14 Si 0.967 3.033 15 H -0.261 1.261 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.018 3.982 19 C 0.071 3.929 20 O -0.389 6.389 21 H 0.048 0.952 22 H 0.055 0.945 23 H 0.095 0.905 24 H 0.062 0.938 25 H 0.089 0.911 26 H 0.043 0.957 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.022 0.978 30 H -0.004 1.004 31 H -0.007 1.007 32 H 0.264 0.736 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.056 0.944 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.763 -4.781 2.155 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.002 4.002 4 C 0.037 3.963 5 H 0.082 0.918 6 C -0.099 4.099 7 N -0.275 5.275 8 C -0.047 4.047 9 C -0.002 4.002 10 C -0.583 4.583 11 H 0.079 0.921 12 C -0.197 4.197 13 N -0.571 5.571 14 Si 0.792 3.208 15 H -0.185 1.185 16 H -0.204 1.204 17 H -0.204 1.204 18 C -0.110 4.110 19 C -0.006 4.006 20 O -0.308 6.308 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.114 0.886 24 H 0.080 0.920 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.118 0.882 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.014 0.986 31 H 0.012 0.988 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.473 -5.370 1.901 18.378 hybrid contribution 0.705 1.470 0.352 1.668 sum -16.768 -3.900 2.252 17.362 Atomic orbital electron populations 1.22943 0.79245 1.03866 1.00997 1.87895 1.21642 1.28011 1.95626 1.22504 0.90135 0.85265 1.02291 1.22176 0.93681 0.92771 0.87675 0.91765 1.22696 0.87644 0.96775 1.02825 1.62205 1.07111 1.23846 1.34344 1.22013 0.95717 0.87709 0.99290 1.18930 0.90506 0.95582 0.95193 1.21641 0.92909 0.93858 1.49860 0.92101 1.25966 0.98243 1.00707 0.94768 1.70114 1.06244 1.29729 1.51014 0.85369 0.78397 0.79283 0.77797 1.18524 1.20404 1.20356 1.22793 1.01255 0.96740 0.90209 1.22704 0.79952 0.94616 1.03318 1.87969 1.22299 1.81469 1.39089 0.93306 0.92621 0.88624 0.91997 0.89272 0.93851 0.88244 0.91193 0.95987 0.98610 0.98825 0.92739 0.90683 0.94550 0.92608 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -9.97 10.67 -144.47 -1.54 -11.51 16 3 C 0.07 1.63 5.61 71.98 0.40 2.04 16 4 C 0.10 2.63 3.09 30.63 0.09 2.72 16 5 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 6 C 0.03 0.84 4.93 86.31 0.43 1.26 16 7 N -0.55 -20.36 4.73 -895.22 -4.23 -24.60 16 8 C 0.08 3.39 4.89 86.31 0.42 3.81 16 9 C 0.04 1.89 4.90 29.85 0.15 2.04 16 10 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 12 C 0.00 0.07 5.46 84.66 0.46 0.53 16 13 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 14 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 15 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 18 C 0.02 0.64 5.43 86.31 0.47 1.11 16 19 C 0.07 2.10 7.01 72.01 0.50 2.61 16 20 O -0.39 -12.06 10.44 -144.47 -1.51 -13.57 16 21 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 22 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.10 2.55 8.09 -2.38 -0.02 2.53 16 28 H 0.07 2.84 8.04 -2.39 -0.02 2.83 16 29 H 0.02 0.92 8.12 -2.39 -0.02 0.91 16 30 H 0.00 -0.25 6.51 -2.39 -0.02 -0.27 16 31 H -0.01 -0.40 8.14 -2.39 -0.02 -0.41 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.07 2.95 6.37 -2.39 -0.02 2.93 16 34 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 Total: -1.00 -67.35 294.16 0.46 -66.89 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.03 Total: 6.20 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 4.41 Total: -13.05 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -3.95 Total: -81.14 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -3.05 Total: -25.08 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -67.35 0.46 -66.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610215604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.887 kcal (2) G-P(sol) polarization free energy of solvation -67.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds