Wall clock time and date at job start Sun Mar 29 2020 21:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99912 * 2 1 4 4 C 1.52999 * 109.47221 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.46728 * 65.00652 * 4 3 2 6 6 C 1.42899 * 113.99778 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46889 * 179.97438 * 6 5 4 8 8 H 1.09004 * 110.64088 * 56.69324 * 7 6 5 9 9 C 1.55162 * 110.71994 * 180.02562 * 7 6 5 10 10 C 1.54907 * 101.57992 * 153.86622 * 9 7 6 11 11 N 1.47422 * 104.83521 * 322.99454 * 10 9 7 12 12 C 1.36939 * 125.65084 * 204.16992 * 11 10 9 13 13 H 1.08002 * 120.00330 * 179.97438 * 12 11 10 14 14 C 1.38809 * 119.99736 * 359.94876 * 12 11 10 15 15 N 1.31621 * 120.00203 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99922 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47361 * 60.00368 * 16 14 12 18 18 H 1.48506 * 109.47103 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47132 * 299.99999 * 16 14 12 20 20 C 1.47024 * 108.70178 * 24.12432 * 11 10 9 21 21 H 1.08999 * 109.47239 * 59.99584 * 1 2 3 22 22 H 1.08999 * 109.46873 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47167 * 299.99421 * 1 2 3 24 24 H 1.09000 * 109.46865 * 60.00255 * 3 2 1 25 25 H 1.08994 * 109.47229 * 300.00235 * 3 2 1 26 26 H 1.09000 * 109.47486 * 305.00590 * 4 3 2 27 27 H 1.09001 * 109.47362 * 184.99867 * 4 3 2 28 28 H 1.08997 * 109.47171 * 299.99768 * 6 5 4 29 29 H 1.08997 * 109.47442 * 59.99964 * 6 5 4 30 30 H 1.08998 * 111.00733 * 271.94084 * 9 7 6 31 31 H 1.09002 * 111.00168 * 35.79158 * 9 7 6 32 32 H 1.09002 * 110.36688 * 204.15445 * 10 9 7 33 33 H 1.09005 * 110.36858 * 81.83184 * 10 9 7 34 34 H 0.97002 * 119.99698 * 179.97438 * 15 14 12 35 35 H 1.08994 * 109.88296 * 239.52444 * 20 11 10 36 36 H 1.09009 * 109.87541 * 118.36457 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5794 -1.2203 6 6 5.3822 0.4200 -1.3222 7 6 5.7265 -0.2347 -2.6615 8 1 5.3294 0.3525 -3.4896 9 6 7.2603 -0.4224 -2.8025 10 6 7.3382 -1.6247 -3.7762 11 7 6.2158 -2.4981 -3.3880 12 6 6.1374 -3.8461 -3.6163 13 1 5.2687 -4.3993 -3.2911 14 6 7.1743 -4.5013 -4.2661 15 7 8.2330 -3.8271 -4.6624 16 14 7.0672 -6.3400 -4.5781 17 1 5.8772 -6.6312 -5.4172 18 1 8.2932 -6.7949 -5.2820 19 1 6.9466 -7.0557 -3.2825 20 6 5.1948 -1.6824 -2.7143 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.6886 1.8464 0.8900 25 1 1.6886 1.8464 -0.8899 26 1 3.8508 0.5685 0.8426 27 1 3.9784 2.1766 0.0902 28 1 5.8631 1.3961 -1.2602 29 1 5.7363 -0.2119 -0.5077 30 1 7.7240 0.4630 -3.2372 31 1 7.7138 -0.6674 -1.8420 32 1 8.2861 -2.1493 -3.6561 33 1 7.2180 -1.2875 -4.8058 34 1 8.9578 -4.2852 -5.1162 35 1 5.0311 -2.0544 -1.7030 36 1 4.2628 -1.7147 -3.2788 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610370696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:06 Heat of formation + Delta-G solvation = -69.027113 kcal Electronic energy + Delta-G solvation = -16224.102293 eV Core-core repulsion = 13516.395273 eV Total energy + Delta-G solvation = -2707.707020 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.55856 -37.67359 -36.46329 -32.76705 -30.64768 -29.45266 -27.97457 -26.32016 -25.26004 -23.26124 -22.54784 -20.05149 -19.36139 -16.98209 -16.76811 -16.54515 -15.74170 -15.34650 -15.12945 -14.62950 -14.22184 -13.79448 -13.15870 -12.66518 -12.35435 -12.27329 -11.72515 -11.49817 -11.43392 -11.22572 -11.04163 -10.82760 -10.68544 -10.18545 -10.04687 -9.85834 -9.74636 -9.67330 -9.43083 -9.32875 -8.54496 -6.70230 -5.54977 -2.95303 3.47783 3.51106 3.53050 3.69059 3.81831 4.58844 4.92248 5.08822 5.17091 5.23403 5.27236 5.32475 5.40369 5.50879 5.57319 5.58945 5.62747 5.68510 5.78408 5.97051 6.14097 6.25251 6.49594 6.66293 6.74472 6.97367 7.06573 7.14010 7.44661 7.61701 7.74245 7.95060 8.47166 9.33739 9.94962 10.61262 11.49392 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.032125 B = 0.005571 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.381270 B = 5025.122052 C = 5777.585518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.064 3.936 4 C 0.062 3.938 5 O -0.377 6.377 6 C 0.076 3.924 7 C -0.098 4.098 8 H 0.075 0.925 9 C -0.137 4.137 10 C 0.153 3.847 11 N -0.608 5.608 12 C -0.217 4.217 13 H 0.076 0.924 14 C -0.014 4.014 15 N -0.926 5.926 16 Si 0.914 3.086 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.286 1.286 20 C 0.148 3.852 21 H 0.040 0.960 22 H 0.086 0.914 23 H 0.037 0.963 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.011 0.989 34 H 0.251 0.749 35 H 0.024 0.976 36 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.397 12.093 9.421 17.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.013 4.013 4 C -0.015 4.015 5 O -0.296 6.296 6 C 0.000 4.000 7 C -0.117 4.117 8 H 0.094 0.906 9 C -0.176 4.176 10 C 0.028 3.972 11 N -0.334 5.334 12 C -0.346 4.346 13 H 0.094 0.906 14 C -0.209 4.209 15 N -0.575 5.575 16 Si 0.745 3.255 17 H -0.213 1.213 18 H -0.216 1.216 19 H -0.212 1.212 20 C 0.022 3.978 21 H 0.059 0.941 22 H 0.104 0.896 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.029 0.971 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.293 11.685 9.174 17.523 hybrid contribution -0.185 -0.517 0.021 0.550 sum -9.478 11.167 9.194 17.294 Atomic orbital electron populations 1.22735 0.81361 1.02866 0.99567 1.88024 1.19327 1.27182 1.95282 1.22555 0.92761 0.85518 1.00445 1.22451 0.93072 0.97298 0.88668 1.87997 1.22854 1.81799 1.36940 1.22587 0.80562 0.98498 0.98389 1.22168 0.97175 0.97217 0.95174 0.90609 1.23027 0.93073 1.00218 1.01253 1.21912 0.95221 0.87518 0.92567 1.44567 1.17220 1.04186 1.67426 1.19077 1.02494 0.82198 1.30801 0.90578 1.24769 0.96856 0.98231 1.01076 1.69789 1.08574 1.33740 1.45418 0.86150 0.76730 0.84810 0.77817 1.21282 1.21629 1.21235 1.21220 0.92231 0.88589 0.95734 0.94096 0.89576 0.94454 0.92247 0.92511 0.92658 0.92215 0.93898 0.93260 0.92309 0.92144 0.87585 0.97094 0.93829 0.95842 0.95986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -5.28 10.67 -40.08 -0.43 -5.70 16 3 C 0.06 0.71 6.32 37.16 0.23 0.95 16 4 C 0.06 0.76 6.32 37.16 0.23 1.00 16 5 O -0.38 -6.20 10.15 -40.08 -0.41 -6.61 16 6 C 0.08 1.22 5.25 37.16 0.20 1.42 16 7 C -0.10 -1.89 3.24 -88.79 -0.29 -2.18 16 8 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 9 C -0.14 -2.71 6.53 -24.58 -0.16 -2.87 16 10 C 0.15 3.90 5.89 -2.53 -0.01 3.89 16 11 N -0.61 -16.72 3.39 -170.08 -0.58 -17.30 16 12 C -0.22 -6.41 10.27 -15.06 -0.15 -6.56 16 13 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 14 C -0.01 -0.42 5.49 -17.43 -0.10 -0.52 16 15 N -0.93 -27.91 10.09 55.49 0.56 -27.35 16 16 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 20 C 0.15 3.47 6.69 -3.07 -0.02 3.45 16 21 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.79 8.06 -51.93 -0.42 0.38 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 32 H 0.11 3.00 5.87 -51.93 -0.30 2.69 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.02 0.56 7.76 -51.93 -0.40 0.16 16 36 H 0.02 0.54 8.14 -51.92 -0.42 0.11 16 LS Contribution 295.77 15.07 4.46 4.46 Total: -1.00 -33.00 295.77 -6.54 -39.54 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -6.16 Total: -4.85 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 1.04 Total: -0.02 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -0.02 Total: -44.65 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.83 Total: -12.32 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.00 -6.54 -39.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610370696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.490 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds