Wall clock time and date at job start Sun Mar 29 2020 21:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99912 * 2 1 4 4 C 1.52999 * 109.47221 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.46728 * 65.00652 * 4 3 2 6 6 C 1.42899 * 113.99778 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46889 * 179.97438 * 6 5 4 8 8 H 1.09004 * 110.64088 * 56.69324 * 7 6 5 9 9 C 1.55162 * 110.71994 * 180.02562 * 7 6 5 10 10 C 1.54907 * 101.57992 * 153.86622 * 9 7 6 11 11 N 1.47422 * 104.83521 * 322.99454 * 10 9 7 12 12 C 1.36939 * 125.65084 * 204.16992 * 11 10 9 13 13 H 1.08002 * 120.00330 * 179.97438 * 12 11 10 14 14 C 1.38809 * 119.99736 * 359.94876 * 12 11 10 15 15 N 1.31621 * 120.00203 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99922 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47361 * 60.00368 * 16 14 12 18 18 H 1.48506 * 109.47103 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47132 * 299.99999 * 16 14 12 20 20 C 1.47024 * 108.70178 * 24.12432 * 11 10 9 21 21 H 1.08999 * 109.47239 * 59.99584 * 1 2 3 22 22 H 1.08999 * 109.46873 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47167 * 299.99421 * 1 2 3 24 24 H 1.09000 * 109.46865 * 60.00255 * 3 2 1 25 25 H 1.08994 * 109.47229 * 300.00235 * 3 2 1 26 26 H 1.09000 * 109.47486 * 305.00590 * 4 3 2 27 27 H 1.09001 * 109.47362 * 184.99867 * 4 3 2 28 28 H 1.08997 * 109.47171 * 299.99768 * 6 5 4 29 29 H 1.08997 * 109.47442 * 59.99964 * 6 5 4 30 30 H 1.08998 * 111.00733 * 271.94084 * 9 7 6 31 31 H 1.09002 * 111.00168 * 35.79158 * 9 7 6 32 32 H 1.09002 * 110.36688 * 204.15445 * 10 9 7 33 33 H 1.09005 * 110.36858 * 81.83184 * 10 9 7 34 34 H 0.97002 * 119.99698 * 179.97438 * 15 14 12 35 35 H 1.08994 * 109.88296 * 239.52444 * 20 11 10 36 36 H 1.09009 * 109.87541 * 118.36457 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5794 -1.2203 6 6 5.3822 0.4200 -1.3222 7 6 5.7265 -0.2347 -2.6615 8 1 5.3294 0.3525 -3.4896 9 6 7.2603 -0.4224 -2.8025 10 6 7.3382 -1.6247 -3.7762 11 7 6.2158 -2.4981 -3.3880 12 6 6.1374 -3.8461 -3.6163 13 1 5.2687 -4.3993 -3.2911 14 6 7.1743 -4.5013 -4.2661 15 7 8.2330 -3.8271 -4.6624 16 14 7.0672 -6.3400 -4.5781 17 1 5.8772 -6.6312 -5.4172 18 1 8.2932 -6.7949 -5.2820 19 1 6.9466 -7.0557 -3.2825 20 6 5.1948 -1.6824 -2.7143 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.6886 1.8464 0.8900 25 1 1.6886 1.8464 -0.8899 26 1 3.8508 0.5685 0.8426 27 1 3.9784 2.1766 0.0902 28 1 5.8631 1.3961 -1.2602 29 1 5.7363 -0.2119 -0.5077 30 1 7.7240 0.4630 -3.2372 31 1 7.7138 -0.6674 -1.8420 32 1 8.2861 -2.1493 -3.6561 33 1 7.2180 -1.2875 -4.8058 34 1 8.9578 -4.2852 -5.1162 35 1 5.0311 -2.0544 -1.7030 36 1 4.2628 -1.7147 -3.2788 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610370696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:06 Heat of formation + Delta-G solvation = -91.776976 kcal Electronic energy + Delta-G solvation = -16225.088801 eV Core-core repulsion = 13516.395273 eV Total energy + Delta-G solvation = -2708.693528 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.82879 -38.93977 -37.82122 -34.75206 -32.11781 -31.01846 -29.63655 -27.29426 -27.03813 -24.96536 -23.45895 -22.01589 -20.99989 -18.89586 -17.91028 -17.58719 -17.15830 -16.64957 -16.30902 -16.10312 -15.69722 -15.54627 -14.51503 -14.20487 -13.94278 -13.48525 -13.45500 -13.04108 -12.90724 -12.70058 -12.61870 -12.24106 -12.13417 -12.03611 -11.81695 -11.66428 -11.44758 -11.32725 -10.74070 -10.61050 -10.48166 -8.88746 -7.77533 -5.22177 1.45506 1.49725 1.56260 2.50168 2.72520 2.91851 3.31576 3.72872 3.86825 4.04394 4.08314 4.20620 4.27478 4.45239 4.48715 4.55089 4.56938 4.61788 4.63666 4.69493 4.74408 4.83729 4.86819 4.95130 5.12138 5.14531 5.39626 5.46888 5.65451 5.81143 6.23626 6.31395 6.39406 7.11578 7.78506 8.43297 9.24429 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.032125 B = 0.005571 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.381270 B = 5025.122052 C = 5777.585518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.059 3.941 4 C 0.054 3.946 5 O -0.406 6.406 6 C 0.085 3.915 7 C -0.087 4.087 8 H 0.079 0.921 9 C -0.118 4.118 10 C 0.151 3.849 11 N -0.630 5.630 12 C -0.246 4.246 13 H 0.074 0.926 14 C -0.065 4.065 15 N -0.949 5.949 16 Si 0.983 3.017 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.146 3.854 21 H 0.046 0.954 22 H 0.086 0.914 23 H 0.060 0.940 24 H 0.093 0.907 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.076 0.924 33 H -0.013 1.013 34 H 0.249 0.751 35 H 0.017 0.983 36 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.851 13.323 10.552 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.017 4.017 4 C -0.022 4.022 5 O -0.326 6.326 6 C 0.008 3.992 7 C -0.106 4.106 8 H 0.097 0.903 9 C -0.157 4.157 10 C 0.026 3.974 11 N -0.356 5.356 12 C -0.375 4.375 13 H 0.092 0.908 14 C -0.258 4.258 15 N -0.598 5.598 16 Si 0.811 3.189 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.202 1.202 20 C 0.021 3.979 21 H 0.065 0.935 22 H 0.104 0.896 23 H 0.078 0.922 24 H 0.110 0.890 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.005 0.995 34 H 0.058 0.942 35 H 0.035 0.965 36 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -9.769 12.939 10.323 19.220 hybrid contribution -0.105 -0.887 -0.328 0.952 sum -9.874 12.052 9.995 18.511 Atomic orbital electron populations 1.22891 0.79716 1.03433 1.00946 1.87962 1.21393 1.29075 1.95599 1.22749 0.92020 0.84824 1.02066 1.22766 0.94011 0.98571 0.86847 1.87950 1.22808 1.82675 1.39160 1.22430 0.81116 0.99851 0.95768 1.22075 0.96307 0.94508 0.97744 0.90260 1.22852 0.93930 0.98763 1.00125 1.21771 0.93359 0.89297 0.92976 1.44907 1.18800 1.04241 1.67692 1.19430 1.02829 0.83722 1.31521 0.90791 1.25651 0.96448 1.02857 1.00822 1.70043 1.08938 1.35272 1.45572 0.85087 0.76743 0.79199 0.77894 1.20582 1.21379 1.20224 1.21323 0.91084 0.91079 0.94437 0.93549 0.89568 0.92164 0.88955 0.92389 0.92917 0.88964 0.90282 0.93574 0.88849 0.91263 0.90611 0.99539 0.94179 0.96494 0.97540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.42 -11.26 10.67 -144.35 -1.54 -12.80 16 3 C 0.06 1.19 6.32 71.98 0.45 1.65 16 4 C 0.05 1.19 6.32 71.98 0.45 1.65 16 5 O -0.41 -12.61 10.15 -144.35 -1.47 -14.07 16 6 C 0.08 2.50 5.25 71.98 0.38 2.87 16 7 C -0.09 -3.24 3.24 -9.61 -0.03 -3.27 16 8 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 9 C -0.12 -4.49 6.53 31.99 0.21 -4.29 16 10 C 0.15 7.84 5.89 86.86 0.51 8.36 16 11 N -0.63 -35.49 3.39 -692.00 -2.35 -37.84 16 12 C -0.25 -14.87 10.27 84.03 0.86 -14.01 16 13 H 0.07 4.35 7.83 -2.91 -0.02 4.32 16 14 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 15 N -0.95 -58.41 10.09 21.65 0.22 -58.19 16 16 Si 0.98 47.48 29.55 68.60 2.03 49.50 16 17 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 18 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 C 0.15 6.94 6.69 86.73 0.58 7.52 16 21 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.05 1.38 8.06 -2.39 -0.02 1.37 16 30 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.07 2.52 8.05 -2.39 -0.02 2.50 16 32 H 0.08 4.41 5.87 -2.39 -0.01 4.39 16 33 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 34 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.02 0.82 7.76 -2.39 -0.02 0.80 16 36 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 Total: -1.00 -72.90 295.77 3.05 -69.85 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.02 Total: 4.76 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 5.13 Total: -1.21 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -2.13 Total: -96.03 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -3.00 Total: -26.87 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.50 kcal Total: -72.90 3.05 -69.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610370696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.923 kcal (2) G-P(sol) polarization free energy of solvation -72.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds