Wall clock time and date at job start Sun Mar 29 2020 21:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99939 * 2 1 4 4 C 1.52998 * 109.47270 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47172 * 65.00005 * 4 3 2 6 6 C 1.42904 * 114.00321 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47099 * 180.02562 * 6 5 4 8 8 H 1.09002 * 110.89110 * 308.87734 * 7 6 5 9 9 C 1.55163 * 111.00241 * 185.00395 * 7 6 5 10 10 C 1.54328 * 102.94145 * 206.38898 * 9 7 6 11 11 N 1.47017 * 107.27297 * 22.18505 * 10 9 7 12 12 C 1.36933 * 125.64620 * 181.02497 * 11 10 9 13 13 H 1.08009 * 119.99899 * 185.48706 * 12 11 10 14 14 C 1.38804 * 120.00355 * 5.21094 * 12 11 10 15 15 N 1.31619 * 120.00075 * 352.94426 * 14 12 11 16 16 Si 1.86801 * 120.00368 * 172.94072 * 14 12 11 17 17 H 1.48502 * 109.47279 * 94.98616 * 16 14 12 18 18 H 1.48497 * 109.47204 * 214.99222 * 16 14 12 19 19 H 1.48507 * 109.46843 * 334.98880 * 16 14 12 20 20 C 1.47430 * 108.70430 * 1.29547 * 11 10 9 21 21 H 1.09010 * 109.47016 * 60.00530 * 1 2 3 22 22 H 1.09004 * 109.47210 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47567 * 300.00382 * 1 2 3 24 24 H 1.09002 * 109.47035 * 59.99675 * 3 2 1 25 25 H 1.09001 * 109.46927 * 299.99972 * 3 2 1 26 26 H 1.08995 * 109.46886 * 304.99813 * 4 3 2 27 27 H 1.09002 * 109.46808 * 184.99972 * 4 3 2 28 28 H 1.09001 * 109.46577 * 59.99594 * 6 5 4 29 29 H 1.09001 * 109.47201 * 300.00166 * 6 5 4 30 30 H 1.08999 * 110.72330 * 88.02076 * 9 7 6 31 31 H 1.09005 * 110.86939 * 324.81433 * 9 7 6 32 32 H 1.09001 * 109.87707 * 262.77223 * 10 9 7 33 33 H 1.08993 * 109.88098 * 141.61078 * 10 9 7 34 34 H 0.96993 * 120.00663 * 180.02562 * 15 14 12 35 35 H 1.08994 * 110.37216 * 94.47503 * 20 11 10 36 36 H 1.09005 * 110.36172 * 216.80624 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3822 0.4198 -1.3220 7 6 5.7267 -0.2338 -2.6618 8 1 5.1366 -1.1370 -2.8167 9 6 7.2451 -0.5384 -2.7578 10 6 7.5062 -0.5176 -4.2787 11 7 6.4311 0.2730 -4.8955 12 6 6.2867 0.5152 -6.2354 13 1 5.5120 1.1827 -6.5832 14 6 7.1396 -0.0924 -7.1465 15 7 8.1711 -0.7892 -6.7188 16 14 6.8235 0.0786 -8.9796 17 1 7.6266 1.2059 -9.5174 18 1 7.2116 -1.1786 -9.6682 19 1 5.3807 0.3442 -9.2104 20 6 5.5378 0.7672 -3.8318 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.6885 1.8464 0.8900 25 1 1.6885 1.8464 -0.8900 26 1 3.8507 0.5687 0.8427 27 1 3.9783 2.1767 0.0902 28 1 5.7362 -0.2119 -0.5073 29 1 5.8632 1.3960 -1.2601 30 1 7.4685 -1.5206 -2.3415 31 1 7.8285 0.2335 -2.2559 32 1 7.4907 -1.5343 -4.6713 33 1 8.4713 -0.0539 -4.4828 34 1 8.7673 -1.2135 -7.3554 35 1 5.8312 1.7714 -3.5261 36 1 4.5024 0.7606 -4.1726 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610370697.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:08 Heat of formation + Delta-G solvation = -70.686199 kcal Electronic energy + Delta-G solvation = -16134.652108 eV Core-core repulsion = 13426.873145 eV Total energy + Delta-G solvation = -2707.778963 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.56334 -37.68889 -36.49870 -32.75863 -30.67398 -29.46158 -28.03674 -26.35983 -25.24683 -23.28724 -22.56075 -19.97001 -19.52515 -16.96885 -16.82057 -16.61630 -15.59052 -15.35593 -15.15966 -14.61926 -14.35455 -13.79254 -12.97817 -12.88400 -12.34410 -12.21578 -11.89289 -11.68603 -11.53446 -11.21831 -10.94947 -10.76411 -10.69147 -10.16142 -10.03961 -9.86526 -9.78182 -9.71664 -9.58071 -9.33388 -8.48666 -6.72385 -5.63927 -2.95080 3.45530 3.50890 3.53508 3.65806 3.80437 4.58045 4.90849 5.07401 5.15415 5.21621 5.24687 5.30880 5.41391 5.50440 5.54375 5.59531 5.61584 5.63661 5.75212 5.94797 6.11618 6.20984 6.47182 6.61410 6.68459 6.87520 7.02045 7.08942 7.44810 7.64235 7.72798 7.90608 8.35489 9.31285 9.92303 10.59945 11.48655 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.036814 B = 0.005075 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.401087 B = 5515.640553 C = 6025.141349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.063 3.937 5 O -0.376 6.376 6 C 0.076 3.924 7 C -0.101 4.101 8 H 0.082 0.918 9 C -0.137 4.137 10 C 0.177 3.823 11 N -0.609 5.609 12 C -0.225 4.225 13 H 0.077 0.923 14 C -0.010 4.010 15 N -0.922 5.922 16 Si 0.909 3.091 17 H -0.290 1.290 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.146 3.854 21 H 0.042 0.958 22 H 0.085 0.915 23 H 0.037 0.963 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.040 0.960 34 H 0.251 0.749 35 H 0.015 0.985 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.840 3.299 15.138 18.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.295 6.295 6 C 0.000 4.000 7 C -0.120 4.120 8 H 0.100 0.900 9 C -0.175 4.175 10 C 0.053 3.947 11 N -0.335 5.335 12 C -0.354 4.354 13 H 0.095 0.905 14 C -0.205 4.205 15 N -0.570 5.570 16 Si 0.740 3.260 17 H -0.218 1.218 18 H -0.217 1.217 19 H -0.206 1.206 20 C 0.020 3.980 21 H 0.060 0.940 22 H 0.103 0.897 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.750 3.005 14.779 17.958 hybrid contribution -0.109 0.432 -0.725 0.851 sum -9.858 3.438 14.054 17.507 Atomic orbital electron populations 1.22733 0.81334 1.02761 0.99720 1.87981 1.19371 1.27416 1.95329 1.22574 0.92748 0.85389 1.00642 1.22445 0.93059 0.97489 0.88443 1.88002 1.22797 1.81742 1.37002 1.22539 0.80634 0.98990 0.97865 1.22361 0.96994 0.99760 0.92932 0.89974 1.22873 0.93923 1.00087 1.00610 1.21133 0.91642 0.96625 0.85336 1.44528 1.27179 1.60011 1.01787 1.19081 1.13369 1.22399 0.80530 0.90489 1.24806 0.97626 1.00099 0.98011 1.69979 1.15927 1.38768 1.32348 0.86134 0.77643 0.76951 0.85289 1.21778 1.21671 1.20644 1.21559 0.94462 0.93865 0.88119 0.93982 0.89672 0.94423 0.92201 0.92282 0.92843 0.92043 0.93753 0.93498 0.92122 0.92563 0.93426 0.94215 0.93868 0.96739 0.94064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.02 10.67 -40.08 -0.43 -5.45 16 3 C 0.06 0.69 6.32 37.16 0.23 0.93 16 4 C 0.06 0.75 6.32 37.16 0.23 0.99 16 5 O -0.38 -6.11 10.27 -40.08 -0.41 -6.52 16 6 C 0.08 1.20 5.39 37.15 0.20 1.40 16 7 C -0.10 -1.94 3.31 -88.35 -0.29 -2.23 16 8 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 9 C -0.14 -2.66 6.41 -24.89 -0.16 -2.82 16 10 C 0.18 4.51 5.38 -3.06 -0.02 4.50 16 11 N -0.61 -16.54 3.39 -169.93 -0.58 -17.11 16 12 C -0.23 -6.60 10.26 -15.06 -0.15 -6.76 16 13 H 0.08 2.18 7.84 -52.48 -0.41 1.77 16 14 C -0.01 -0.28 5.48 -17.43 -0.10 -0.37 16 15 N -0.92 -27.99 10.36 55.49 0.57 -27.42 16 16 Si 0.91 22.77 29.56 -169.99 -5.02 17.74 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C 0.15 3.30 6.67 -2.41 -0.02 3.28 16 21 H 0.04 0.36 8.14 -51.92 -0.42 -0.06 16 22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.69 7.96 -51.93 -0.41 0.28 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.00 8.04 -51.93 -0.42 0.59 16 32 H 0.05 1.33 7.30 -51.93 -0.38 0.95 16 33 H 0.04 1.10 7.61 -51.93 -0.40 0.71 16 34 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.01 0.33 7.91 -51.93 -0.41 -0.08 16 36 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 296.68 15.07 4.47 4.47 Total: -1.00 -33.05 296.68 -6.56 -39.61 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -6.21 Total: -5.63 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 1.05 Total: 0.31 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.00 Total: -44.53 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.84 Total: -11.97 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.05 -6.56 -39.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610370697.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.077 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds