Wall clock time and date at job start Sun Mar 29 2020 21:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99939 * 2 1 4 4 C 1.52998 * 109.47270 * 179.97438 * 3 2 1 5 5 O 1.42896 * 109.47172 * 65.00005 * 4 3 2 6 6 C 1.42904 * 114.00321 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47099 * 180.02562 * 6 5 4 8 8 H 1.09002 * 110.89110 * 308.87734 * 7 6 5 9 9 C 1.55163 * 111.00241 * 185.00395 * 7 6 5 10 10 C 1.54328 * 102.94145 * 206.38898 * 9 7 6 11 11 N 1.47017 * 107.27297 * 22.18505 * 10 9 7 12 12 C 1.36933 * 125.64620 * 181.02497 * 11 10 9 13 13 H 1.08009 * 119.99899 * 185.48706 * 12 11 10 14 14 C 1.38804 * 120.00355 * 5.21094 * 12 11 10 15 15 N 1.31619 * 120.00075 * 352.94426 * 14 12 11 16 16 Si 1.86801 * 120.00368 * 172.94072 * 14 12 11 17 17 H 1.48502 * 109.47279 * 94.98616 * 16 14 12 18 18 H 1.48497 * 109.47204 * 214.99222 * 16 14 12 19 19 H 1.48507 * 109.46843 * 334.98880 * 16 14 12 20 20 C 1.47430 * 108.70430 * 1.29547 * 11 10 9 21 21 H 1.09010 * 109.47016 * 60.00530 * 1 2 3 22 22 H 1.09004 * 109.47210 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47567 * 300.00382 * 1 2 3 24 24 H 1.09002 * 109.47035 * 59.99675 * 3 2 1 25 25 H 1.09001 * 109.46927 * 299.99972 * 3 2 1 26 26 H 1.08995 * 109.46886 * 304.99813 * 4 3 2 27 27 H 1.09002 * 109.46808 * 184.99972 * 4 3 2 28 28 H 1.09001 * 109.46577 * 59.99594 * 6 5 4 29 29 H 1.09001 * 109.47201 * 300.00166 * 6 5 4 30 30 H 1.08999 * 110.72330 * 88.02076 * 9 7 6 31 31 H 1.09005 * 110.86939 * 324.81433 * 9 7 6 32 32 H 1.09001 * 109.87707 * 262.77223 * 10 9 7 33 33 H 1.08993 * 109.88098 * 141.61078 * 10 9 7 34 34 H 0.96993 * 120.00663 * 180.02562 * 15 14 12 35 35 H 1.08994 * 110.37216 * 94.47503 * 20 11 10 36 36 H 1.09005 * 110.36172 * 216.80624 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3822 0.4198 -1.3220 7 6 5.7267 -0.2338 -2.6618 8 1 5.1366 -1.1370 -2.8167 9 6 7.2451 -0.5384 -2.7578 10 6 7.5062 -0.5176 -4.2787 11 7 6.4311 0.2730 -4.8955 12 6 6.2867 0.5152 -6.2354 13 1 5.5120 1.1827 -6.5832 14 6 7.1396 -0.0924 -7.1465 15 7 8.1711 -0.7892 -6.7188 16 14 6.8235 0.0786 -8.9796 17 1 7.6266 1.2059 -9.5174 18 1 7.2116 -1.1786 -9.6682 19 1 5.3807 0.3442 -9.2104 20 6 5.5378 0.7672 -3.8318 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.6885 1.8464 0.8900 25 1 1.6885 1.8464 -0.8900 26 1 3.8507 0.5687 0.8427 27 1 3.9783 2.1767 0.0902 28 1 5.7362 -0.2119 -0.5073 29 1 5.8632 1.3960 -1.2601 30 1 7.4685 -1.5206 -2.3415 31 1 7.8285 0.2335 -2.2559 32 1 7.4907 -1.5343 -4.6713 33 1 8.4713 -0.0539 -4.4828 34 1 8.7673 -1.2135 -7.3554 35 1 5.8312 1.7714 -3.5261 36 1 4.5024 0.7606 -4.1726 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610370697.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:07 Heat of formation + Delta-G solvation = -93.506406 kcal Electronic energy + Delta-G solvation = -16135.641667 eV Core-core repulsion = 13426.873145 eV Total energy + Delta-G solvation = -2708.768522 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.79766 -38.93663 -37.82098 -34.73380 -32.12079 -31.01033 -29.67715 -27.27684 -27.00769 -24.97235 -23.44722 -21.95335 -21.11214 -18.85830 -17.87464 -17.72656 -16.90733 -16.58220 -16.29123 -16.18687 -15.75803 -15.54749 -14.39909 -14.25880 -13.90412 -13.80551 -13.25817 -13.14558 -12.91460 -12.68010 -12.60137 -12.27420 -12.02598 -11.96649 -11.85093 -11.70022 -11.45264 -11.40479 -10.68221 -10.61037 -10.45897 -8.89533 -7.86539 -5.20872 1.44720 1.47306 1.57025 2.49657 2.73260 2.91324 3.31463 3.71889 3.87918 4.06383 4.08331 4.20287 4.27904 4.46883 4.49344 4.54423 4.58567 4.59505 4.64081 4.70318 4.77694 4.84303 4.87829 4.96241 5.08325 5.10832 5.41848 5.46502 5.67405 5.76169 6.20179 6.23558 6.40369 7.10385 7.77759 8.43492 9.24776 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.036814 B = 0.005075 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.401087 B = 5515.640553 C = 6025.141349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.059 3.941 4 C 0.055 3.945 5 O -0.407 6.407 6 C 0.086 3.914 7 C -0.089 4.089 8 H 0.067 0.933 9 C -0.119 4.119 10 C 0.182 3.818 11 N -0.632 5.632 12 C -0.248 4.248 13 H 0.079 0.921 14 C -0.065 4.065 15 N -0.950 5.950 16 Si 0.980 3.020 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.270 1.270 20 C 0.143 3.857 21 H 0.042 0.958 22 H 0.090 0.910 23 H 0.059 0.941 24 H 0.093 0.907 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.011 0.989 33 H 0.007 0.993 34 H 0.248 0.752 35 H 0.025 0.975 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.677 4.086 16.603 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.017 4.017 4 C -0.021 4.021 5 O -0.327 6.327 6 C 0.009 3.991 7 C -0.109 4.109 8 H 0.086 0.914 9 C -0.157 4.157 10 C 0.057 3.943 11 N -0.359 5.359 12 C -0.377 4.377 13 H 0.097 0.903 14 C -0.258 4.258 15 N -0.599 5.599 16 Si 0.807 3.193 17 H -0.211 1.211 18 H -0.218 1.218 19 H -0.194 1.194 20 C 0.018 3.982 21 H 0.061 0.939 22 H 0.109 0.891 23 H 0.078 0.922 24 H 0.111 0.889 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.029 0.971 33 H 0.025 0.975 34 H 0.057 0.943 35 H 0.042 0.958 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -10.614 3.813 16.275 19.800 hybrid contribution 0.096 0.218 -1.153 1.177 sum -10.518 4.031 15.122 18.856 Atomic orbital electron populations 1.22899 0.79745 1.03579 1.00813 1.87925 1.21318 1.28814 1.95587 1.22732 0.92189 0.84919 1.01866 1.22743 0.93804 0.98565 0.86989 1.87956 1.22817 1.82542 1.39382 1.22381 0.81016 0.99794 0.95906 1.22219 0.96399 0.98419 0.93839 0.91445 1.22719 0.94530 1.02438 0.96057 1.20943 0.90052 0.93949 0.89391 1.44879 1.28512 1.60305 1.02193 1.19477 1.13431 1.22648 0.82173 0.90318 1.25692 0.97436 1.00071 1.02633 1.70199 1.16625 1.39561 1.33545 0.85049 0.77979 0.76747 0.79481 1.21101 1.21756 1.19440 1.21711 0.93001 0.95165 0.88355 0.93913 0.89132 0.92246 0.88944 0.92975 0.91924 0.89735 0.91298 0.92085 0.89710 0.90149 0.97055 0.97471 0.94312 0.95755 0.95132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.42 -10.31 10.67 -144.34 -1.54 -11.85 16 3 C 0.06 1.17 6.32 71.98 0.45 1.62 16 4 C 0.06 1.17 6.32 71.98 0.45 1.62 16 5 O -0.41 -12.36 10.27 -144.34 -1.48 -13.84 16 6 C 0.09 2.43 5.39 71.98 0.39 2.81 16 7 C -0.09 -3.30 3.31 -9.32 -0.03 -3.33 16 8 H 0.07 2.68 8.14 -2.39 -0.02 2.67 16 9 C -0.12 -4.47 6.41 31.79 0.20 -4.27 16 10 C 0.18 9.45 5.38 86.73 0.47 9.92 16 11 N -0.63 -34.99 3.39 -691.55 -2.35 -37.34 16 12 C -0.25 -14.82 10.26 84.03 0.86 -13.96 16 13 H 0.08 4.52 7.84 -2.91 -0.02 4.49 16 14 C -0.07 -3.89 5.48 84.86 0.46 -3.43 16 15 N -0.95 -59.33 10.36 21.65 0.22 -59.11 16 16 Si 0.98 47.43 29.56 68.60 2.03 49.46 16 17 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 18 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 C 0.14 6.42 6.67 86.93 0.58 7.00 16 21 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 22 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 23 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.57 7.96 -2.39 -0.02 1.55 16 30 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.08 2.65 8.04 -2.38 -0.02 2.63 16 32 H 0.01 0.65 7.30 -2.39 -0.02 0.64 16 33 H 0.01 0.41 7.61 -2.39 -0.02 0.39 16 34 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.02 1.06 7.91 -2.39 -0.02 1.04 16 36 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -72.95 296.68 3.00 -69.95 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: 1.02 Total: 3.08 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 5.09 Total: -0.34 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -2.12 Total: -96.45 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -3.02 Total: -25.69 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -72.95 3.00 -69.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610370697.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.557 kcal (2) G-P(sol) polarization free energy of solvation -72.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds