Wall clock time and date at job start Sun Mar 29 2020 21:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00137 * 2 1 4 4 C 1.52997 * 109.47310 * 179.97438 * 3 2 1 5 5 O 1.42907 * 109.46922 * 64.99950 * 4 3 2 6 6 C 1.42894 * 114.00122 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47278 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.47050 * 65.00251 * 7 6 5 9 9 C 1.36939 * 119.99719 * 270.00179 * 8 7 6 10 10 H 1.08002 * 120.00048 * 144.70726 * 9 8 7 11 11 C 1.38810 * 119.99994 * 324.70690 * 9 8 7 12 12 N 1.31626 * 120.00162 * 338.13454 * 11 9 8 13 13 Si 1.86803 * 120.00129 * 158.13491 * 11 9 8 14 14 H 1.48508 * 109.46980 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47158 * 119.99844 * 13 11 9 16 16 H 1.48495 * 109.47241 * 240.00002 * 13 11 9 17 17 C 1.46494 * 120.00043 * 90.00248 * 8 7 6 18 18 C 1.53001 * 117.49841 * 183.24027 * 17 8 7 19 19 C 1.53001 * 117.49955 * 114.58271 * 17 8 7 20 20 H 1.08997 * 109.46645 * 59.99981 * 1 2 3 21 21 H 1.09000 * 109.47174 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.46973 * 300.00410 * 1 2 3 23 23 H 1.09000 * 109.46871 * 59.99909 * 3 2 1 24 24 H 1.08998 * 109.47235 * 300.00104 * 3 2 1 25 25 H 1.09004 * 109.47394 * 305.00482 * 4 3 2 26 26 H 1.08999 * 109.47533 * 184.99686 * 4 3 2 27 27 H 1.08994 * 109.47354 * 300.00315 * 6 5 4 28 28 H 1.09001 * 109.46931 * 60.00279 * 6 5 4 29 29 H 1.09001 * 109.47031 * 185.00079 * 7 6 5 30 30 H 1.09002 * 109.46702 * 304.99859 * 7 6 5 31 31 H 0.96995 * 119.99731 * 175.89724 * 12 11 9 32 32 H 1.09000 * 115.54914 * 328.90428 * 17 8 7 33 33 H 1.09001 * 117.49856 * 359.97438 * 18 17 8 34 34 H 1.08998 * 117.50030 * 145.01936 * 18 17 8 35 35 H 1.08999 * 117.49476 * 214.97631 * 19 17 8 36 36 H 1.09000 * 117.49772 * 359.96871 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5792 -1.2202 6 6 5.3822 0.4196 -1.3222 7 6 5.7267 -0.2340 -2.6619 8 7 5.3588 0.6694 -3.7550 9 6 4.1067 0.6037 -4.3054 10 1 3.6175 1.5052 -4.6437 11 6 3.4661 -0.6216 -4.4287 12 7 4.1694 -1.7342 -4.4352 13 14 1.6060 -0.6916 -4.5855 14 1 1.0542 0.6868 -4.5519 15 1 1.2416 -1.3389 -5.8713 16 1 1.0435 -1.4781 -3.4585 17 6 6.3304 1.6430 -4.2590 18 6 5.8621 2.6089 -5.3492 19 6 6.8233 1.4696 -5.6970 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.6886 1.8463 0.8900 24 1 1.6887 1.8464 -0.8900 25 1 3.8509 0.5684 0.8427 26 1 3.9785 2.1765 0.0902 27 1 5.8632 1.3957 -1.2602 28 1 5.7362 -0.2122 -0.5075 29 1 6.7969 -0.4368 -2.7027 30 1 5.1757 -1.1692 -2.7622 31 1 3.7186 -2.5927 -4.4613 32 1 7.0425 2.0198 -3.5248 33 1 4.8311 2.5196 -5.6917 34 1 6.2664 3.6210 -5.3326 35 1 7.8597 1.7326 -5.9089 36 1 6.4251 0.6307 -6.2679 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610570711.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:09 Heat of formation + Delta-G solvation = -38.320350 kcal Electronic energy + Delta-G solvation = -16934.618608 eV Core-core repulsion = 14228.243133 eV Total energy + Delta-G solvation = -2706.375475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -37.94007 -37.10529 -36.22229 -33.33493 -31.00414 -29.65244 -27.41696 -25.94532 -24.09413 -22.06355 -21.57363 -21.13690 -19.53451 -16.54795 -16.26499 -16.16130 -15.30391 -14.99605 -14.84934 -14.55416 -14.21215 -13.63431 -13.04955 -12.66555 -12.26173 -11.87672 -11.63698 -11.45016 -11.03505 -10.80822 -10.69652 -10.57675 -10.52193 -10.10569 -9.93860 -9.55387 -9.50710 -9.37998 -9.20199 -8.71647 -8.25988 -6.41167 -5.59947 -3.18207 3.51084 3.59664 3.59938 4.07888 4.46632 4.64781 5.02550 5.30375 5.34758 5.49303 5.55631 5.56582 5.59692 5.73682 5.81693 5.90949 5.96597 6.05506 6.15836 6.18328 6.24666 6.41076 6.55450 6.62798 6.76379 6.81098 7.12049 7.29916 7.44483 7.76924 7.96996 8.16299 8.66533 9.32055 9.97287 10.49785 11.37690 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.021802 B = 0.010431 C = 0.008257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.986030 B = 2683.658194 C = 3390.423816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.066 3.934 4 C 0.059 3.941 5 O -0.341 6.341 6 C 0.049 3.951 7 C 0.142 3.858 8 N -0.546 5.546 9 C -0.236 4.236 10 H 0.060 0.940 11 C 0.019 3.981 12 N -0.890 5.890 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.297 1.297 16 H -0.284 1.284 17 C 0.120 3.880 18 C -0.196 4.196 19 C -0.223 4.223 20 H 0.040 0.960 21 H 0.082 0.918 22 H 0.035 0.965 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.041 0.959 30 H 0.110 0.890 31 H 0.251 0.749 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.248 5.711 8.232 10.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C -0.011 4.011 4 C -0.018 4.018 5 O -0.259 6.259 6 C -0.030 4.030 7 C 0.015 3.985 8 N -0.262 5.262 9 C -0.365 4.365 10 H 0.078 0.922 11 C -0.180 4.180 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.205 1.205 15 H -0.224 1.224 16 H -0.211 1.211 17 C 0.011 3.989 18 C -0.235 4.235 19 C -0.264 4.264 20 H 0.058 0.942 21 H 0.101 0.899 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.127 0.873 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.336 5.296 8.037 9.718 hybrid contribution -0.988 0.327 0.190 1.058 sum -2.324 5.624 8.227 10.233 Atomic orbital electron populations 1.22696 0.81892 1.02497 0.99388 1.88006 1.18890 1.27481 1.95230 1.22535 0.93237 0.85248 1.00055 1.22377 0.92817 0.97000 0.89648 1.88301 1.22077 1.80861 1.34649 1.23384 0.81444 0.98000 1.00204 1.21077 0.97210 0.97094 0.83077 1.43329 1.09851 1.38168 1.34866 1.18873 0.90596 0.91527 1.35512 0.92220 1.24941 0.97966 0.95741 0.99362 1.70013 1.33951 0.97024 1.52372 0.86354 0.86851 0.77512 0.76740 1.20506 1.22412 1.21068 1.21213 0.94627 0.95199 0.87885 1.23013 1.00439 0.93153 1.06865 1.23371 0.96602 1.00966 1.05458 0.94180 0.89937 0.94676 0.92931 0.92349 0.93859 0.93022 0.95581 0.95614 0.94035 0.87284 0.93880 0.89876 0.88496 0.90960 0.91389 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.38 -7.11 10.67 -40.08 -0.43 -7.53 16 3 C 0.07 1.08 6.32 37.16 0.23 1.32 16 4 C 0.06 1.03 6.32 37.16 0.23 1.27 16 5 O -0.34 -7.73 9.78 -40.08 -0.39 -8.12 16 6 C 0.05 1.01 6.28 37.16 0.23 1.25 16 7 C 0.14 3.40 5.76 -4.04 -0.02 3.38 16 8 N -0.55 -13.86 2.76 -165.66 -0.46 -14.31 16 9 C -0.24 -6.57 8.12 -15.06 -0.12 -6.69 16 10 H 0.06 1.70 6.56 -52.49 -0.34 1.35 16 11 C 0.02 0.55 4.97 -17.43 -0.09 0.46 16 12 N -0.89 -26.39 11.33 55.49 0.63 -25.76 16 13 Si 0.90 23.03 29.61 -169.99 -5.03 18.00 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 16 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 17 C 0.12 2.64 6.56 -67.93 -0.45 2.19 16 18 C -0.20 -4.01 9.80 -26.69 -0.26 -4.27 16 19 C -0.22 -4.67 10.36 -26.69 -0.28 -4.95 16 20 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 22 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.11 3.02 5.36 -51.93 -0.28 2.74 16 31 H 0.25 7.24 8.32 -40.82 -0.34 6.90 16 32 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 33 H 0.10 2.17 6.37 -51.93 -0.33 1.84 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 LS Contribution 301.50 15.07 4.54 4.54 Total: -1.00 -31.62 301.50 -6.54 -38.16 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.00 Total: -0.51 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 0.60 Total: -4.47 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.17 Total: -40.07 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.82 Total: -15.65 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.03 Total: 18.00 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.62 -6.54 -38.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610570711.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.160 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds