Wall clock time and date at job start Sun Mar 29 2020 21:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00137 * 2 1 4 4 C 1.52997 * 109.47310 * 179.97438 * 3 2 1 5 5 O 1.42907 * 109.46922 * 64.99950 * 4 3 2 6 6 C 1.42894 * 114.00122 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47278 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.47050 * 65.00251 * 7 6 5 9 9 C 1.36939 * 119.99719 * 270.00179 * 8 7 6 10 10 H 1.08002 * 120.00048 * 144.70726 * 9 8 7 11 11 C 1.38810 * 119.99994 * 324.70690 * 9 8 7 12 12 N 1.31626 * 120.00162 * 338.13454 * 11 9 8 13 13 Si 1.86803 * 120.00129 * 158.13491 * 11 9 8 14 14 H 1.48508 * 109.46980 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47158 * 119.99844 * 13 11 9 16 16 H 1.48495 * 109.47241 * 240.00002 * 13 11 9 17 17 C 1.46494 * 120.00043 * 90.00248 * 8 7 6 18 18 C 1.53001 * 117.49841 * 183.24027 * 17 8 7 19 19 C 1.53001 * 117.49955 * 114.58271 * 17 8 7 20 20 H 1.08997 * 109.46645 * 59.99981 * 1 2 3 21 21 H 1.09000 * 109.47174 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.46973 * 300.00410 * 1 2 3 23 23 H 1.09000 * 109.46871 * 59.99909 * 3 2 1 24 24 H 1.08998 * 109.47235 * 300.00104 * 3 2 1 25 25 H 1.09004 * 109.47394 * 305.00482 * 4 3 2 26 26 H 1.08999 * 109.47533 * 184.99686 * 4 3 2 27 27 H 1.08994 * 109.47354 * 300.00315 * 6 5 4 28 28 H 1.09001 * 109.46931 * 60.00279 * 6 5 4 29 29 H 1.09001 * 109.47031 * 185.00079 * 7 6 5 30 30 H 1.09002 * 109.46702 * 304.99859 * 7 6 5 31 31 H 0.96995 * 119.99731 * 175.89724 * 12 11 9 32 32 H 1.09000 * 115.54914 * 328.90428 * 17 8 7 33 33 H 1.09001 * 117.49856 * 359.97438 * 18 17 8 34 34 H 1.08998 * 117.50030 * 145.01936 * 18 17 8 35 35 H 1.08999 * 117.49476 * 214.97631 * 19 17 8 36 36 H 1.09000 * 117.49772 * 359.96871 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5792 -1.2202 6 6 5.3822 0.4196 -1.3222 7 6 5.7267 -0.2340 -2.6619 8 7 5.3588 0.6694 -3.7550 9 6 4.1067 0.6037 -4.3054 10 1 3.6175 1.5052 -4.6437 11 6 3.4661 -0.6216 -4.4287 12 7 4.1694 -1.7342 -4.4352 13 14 1.6060 -0.6916 -4.5855 14 1 1.0542 0.6868 -4.5519 15 1 1.2416 -1.3389 -5.8713 16 1 1.0435 -1.4781 -3.4585 17 6 6.3304 1.6430 -4.2590 18 6 5.8621 2.6089 -5.3492 19 6 6.8233 1.4696 -5.6970 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.6886 1.8463 0.8900 24 1 1.6887 1.8464 -0.8900 25 1 3.8509 0.5684 0.8427 26 1 3.9785 2.1765 0.0902 27 1 5.8632 1.3957 -1.2602 28 1 5.7362 -0.2122 -0.5075 29 1 6.7969 -0.4368 -2.7027 30 1 5.1757 -1.1692 -2.7622 31 1 3.7186 -2.5927 -4.4613 32 1 7.0425 2.0198 -3.5248 33 1 4.8311 2.5196 -5.6917 34 1 6.2664 3.6210 -5.3326 35 1 7.8597 1.7326 -5.9089 36 1 6.4251 0.6307 -6.2679 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610570711.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:09 Heat of formation + Delta-G solvation = -59.094379 kcal Electronic energy + Delta-G solvation = -16935.519437 eV Core-core repulsion = 14228.243133 eV Total energy + Delta-G solvation = -2707.276304 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.39304 -38.73650 -37.78581 -35.22117 -32.90395 -31.15096 -29.19631 -27.15630 -26.08221 -23.38357 -23.29683 -22.80882 -21.41657 -18.28689 -17.81950 -17.65486 -17.03244 -16.61908 -16.28804 -16.10726 -15.83426 -15.49090 -14.62126 -14.39932 -13.67474 -13.61743 -13.29201 -13.08298 -12.70260 -12.54305 -12.44296 -12.23720 -12.17281 -11.91403 -11.77938 -11.43807 -11.31313 -10.87257 -10.63627 -10.37150 -10.25107 -8.45426 -7.70711 -5.32515 1.41429 1.48610 1.53177 2.55933 2.89320 3.04383 3.24303 3.51285 3.56095 4.13583 4.26720 4.33126 4.39038 4.43624 4.49168 4.50761 4.53919 4.60713 4.63119 4.71423 4.77175 4.85266 4.92725 4.96605 5.02082 5.11943 5.40218 5.57938 5.73886 5.85861 6.24381 6.49756 6.72378 7.24904 7.96047 8.42460 9.21075 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.021802 B = 0.010431 C = 0.008257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.986030 B = 2683.658194 C = 3390.423816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.063 3.937 4 C 0.053 3.947 5 O -0.385 6.385 6 C 0.058 3.942 7 C 0.138 3.862 8 N -0.562 5.562 9 C -0.225 4.225 10 H 0.050 0.950 11 C -0.028 4.028 12 N -0.918 5.918 13 Si 0.941 3.059 14 H -0.273 1.273 15 H -0.296 1.296 16 H -0.294 1.294 17 C 0.100 3.900 18 C -0.183 4.183 19 C -0.217 4.217 20 H 0.033 0.967 21 H 0.087 0.913 22 H 0.069 0.931 23 H 0.096 0.904 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.245 0.755 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.762 7.619 9.442 12.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.013 4.013 4 C -0.024 4.024 5 O -0.304 6.304 6 C -0.020 4.020 7 C 0.012 3.988 8 N -0.280 5.280 9 C -0.356 4.356 10 H 0.068 0.932 11 C -0.224 4.224 12 N -0.564 5.564 13 Si 0.771 3.229 14 H -0.198 1.198 15 H -0.224 1.224 16 H -0.221 1.221 17 C -0.008 4.008 18 C -0.221 4.221 19 C -0.258 4.258 20 H 0.052 0.948 21 H 0.105 0.895 22 H 0.087 0.913 23 H 0.114 0.886 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.133 0.867 33 H 0.089 0.911 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.846 7.234 9.249 11.772 hybrid contribution -1.104 -0.203 -0.159 1.134 sum -1.951 7.031 9.090 11.656 Atomic orbital electron populations 1.22888 0.80087 1.03354 1.00724 1.87946 1.21122 1.29057 1.95520 1.22696 0.92663 0.84676 1.01260 1.22665 0.93605 0.98126 0.87997 1.88229 1.22835 1.81832 1.37507 1.23159 0.81288 0.98915 0.98673 1.21011 0.97342 0.95763 0.84699 1.43491 1.09904 1.38971 1.35600 1.18918 0.91905 0.90837 1.33922 0.93242 1.25454 1.00648 0.95788 1.00553 1.70125 1.34724 0.97066 1.54500 0.85619 0.83740 0.77426 0.76109 1.19795 1.22365 1.22056 1.21561 0.95059 0.95162 0.88997 1.23019 0.99120 0.94849 1.05150 1.23277 0.98478 1.00062 1.03984 0.94816 0.89488 0.91261 0.88642 0.94017 0.92737 0.90492 0.93755 0.93577 0.92742 0.91215 0.94533 0.86749 0.91119 0.87021 0.87843 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.95 16 2 O -0.42 -15.31 10.67 -144.34 -1.54 -16.85 16 3 C 0.06 1.96 6.32 71.98 0.45 2.42 16 4 C 0.05 1.73 6.32 71.98 0.45 2.18 16 5 O -0.38 -17.14 9.78 -144.34 -1.41 -18.55 16 6 C 0.06 2.33 6.28 71.98 0.45 2.78 16 7 C 0.14 6.59 5.76 86.38 0.50 7.08 16 8 N -0.56 -28.35 2.76 -678.04 -1.87 -30.22 16 9 C -0.23 -12.70 8.12 84.03 0.68 -12.02 16 10 H 0.05 2.85 6.56 -2.91 -0.02 2.83 16 11 C -0.03 -1.65 4.97 84.86 0.42 -1.23 16 12 N -0.92 -56.15 11.33 21.65 0.25 -55.91 16 13 Si 0.94 48.47 29.61 68.60 2.03 50.50 16 14 H -0.27 -13.56 7.11 99.48 0.71 -12.86 16 15 H -0.30 -15.05 7.11 99.48 0.71 -14.35 16 16 H -0.29 -15.41 7.11 99.48 0.71 -14.70 16 17 C 0.10 4.20 6.56 44.99 0.30 4.50 16 18 C -0.18 -7.07 9.80 30.62 0.30 -6.77 16 19 C -0.22 -8.72 10.36 30.62 0.32 -8.40 16 20 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 21 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 22 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.05 2.37 8.07 -2.39 -0.02 2.35 16 30 H 0.07 3.96 5.36 -2.39 -0.01 3.95 16 31 H 0.25 14.67 8.32 -92.71 -0.77 13.90 16 32 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 33 H 0.07 3.11 6.37 -2.39 -0.02 3.10 16 34 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 35 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 36 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -69.63 301.50 3.61 -66.02 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.03 Total: 12.50 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 5.12 Total: -7.50 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -1.62 Total: -86.12 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -2.95 Total: -35.40 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.50 kcal Total: -69.63 3.61 -66.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610570711.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.927 kcal (2) G-P(sol) polarization free energy of solvation -69.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds