Wall clock time and date at job start Sun Mar 29 2020 21:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99820 * 2 1 4 4 H 1.48501 * 109.47402 * 240.00196 * 3 2 1 5 5 H 1.48503 * 109.47233 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47297 * 120.00196 * 3 2 1 7 7 C 1.37874 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00255 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00225 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47470 * 179.97438 * 9 7 2 11 11 C 1.34560 * 126.74354 * 124.99702 * 10 9 7 12 12 N 1.30651 * 108.29120 * 180.20882 * 11 10 9 13 13 C 1.33985 * 109.78922 * 359.60196 * 12 11 10 14 14 C 1.48377 * 125.65388 * 180.16297 * 13 12 11 15 15 C 1.39760 * 120.90813 * 179.97438 * 14 13 12 16 16 C 1.37979 * 119.02157 * 179.70845 * 15 14 13 17 17 N 1.31926 * 120.87867 * 0.57720 * 16 15 14 18 18 C 1.31924 * 122.00472 * 359.71791 * 17 16 15 19 19 C 1.37974 * 120.88325 * 359.97438 * 18 17 16 20 20 N 1.31509 * 108.69813 * 0.40502 * 13 12 11 21 21 H 0.96994 * 120.00179 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47373 * 59.99646 * 9 7 2 23 23 H 1.09001 * 109.46901 * 299.99901 * 9 7 2 24 24 H 1.08002 * 125.85046 * 359.93966 * 11 10 9 25 25 H 1.07994 * 120.48931 * 0.02562 * 15 14 13 26 26 H 1.08001 * 119.56184 * 180.29953 * 16 15 14 27 27 H 1.08007 * 119.55681 * 179.97438 * 18 17 16 28 28 H 1.07998 * 120.49406 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 2.2563 -4.6272 0.8797 12 7 3.2448 -5.4123 0.5428 13 6 3.8454 -4.9389 -0.5573 14 6 5.0059 -5.5584 -1.2436 15 6 5.5559 -4.9779 -2.3898 16 6 6.6387 -5.5838 -2.9933 17 7 7.1465 -6.7008 -2.5088 18 6 6.6536 -7.2841 -1.4330 19 6 5.5753 -6.7417 -0.7646 20 7 3.2393 -3.8313 -0.9251 21 1 -0.4850 0.8400 -0.0004 22 1 0.6249 -2.5564 -0.8919 23 1 0.6242 -2.5575 0.8880 24 1 1.5977 -4.7660 1.7243 25 1 5.1427 -4.0658 -2.7942 26 1 7.0737 -5.1400 -3.8767 27 1 7.1000 -8.1984 -1.0707 28 1 5.1765 -7.2246 0.1153 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611112779.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:33 Heat of formation + Delta-G solvation = 117.164198 kcal Electronic energy + Delta-G solvation = -14596.775604 eV Core-core repulsion = 12035.485110 eV Total energy + Delta-G solvation = -2561.290494 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.44059 -39.74946 -34.42388 -33.04692 -31.79578 -31.17475 -30.25758 -27.51495 -24.49689 -23.45077 -22.90938 -21.01284 -20.31520 -17.15502 -16.77398 -15.96020 -15.71191 -15.43760 -14.96686 -14.54601 -13.91570 -13.72320 -13.48312 -13.24317 -12.54258 -12.30895 -11.58990 -11.55961 -11.12426 -10.89082 -10.44276 -10.37954 -9.80393 -9.48646 -9.46033 -9.14897 -9.07262 -8.77512 -8.41716 -6.39586 -4.45975 1.01867 1.24857 2.41716 3.12804 3.17534 3.21493 3.27142 3.39915 4.10578 4.18608 4.27325 4.52592 4.80202 4.97287 5.17421 5.21900 5.26763 5.56372 5.72899 5.90261 5.92514 6.38244 6.58808 6.74054 6.76648 6.86766 7.00559 7.45173 7.66063 7.74969 8.02041 8.54542 8.66410 9.21064 10.69621 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.036761 B = 0.005891 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.487582 B = 4751.769281 C = 5312.870613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.910 3.090 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.069 0.931 9 C 0.252 3.748 10 N -0.328 5.328 11 C 0.236 3.764 12 N -0.549 5.549 13 C 0.210 3.790 14 C 0.057 3.943 15 C -0.145 4.145 16 C 0.095 3.905 17 N -0.489 5.489 18 C 0.091 3.909 19 C -0.139 4.139 20 N -0.277 5.277 21 H 0.270 0.730 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.215 0.785 25 H 0.144 0.856 26 H 0.158 0.842 27 H 0.157 0.843 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.706 -9.515 -0.899 11.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.737 3.263 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.087 0.913 9 C 0.134 3.866 10 N -0.117 5.117 11 C -0.061 4.061 12 N -0.278 5.278 13 C -0.069 4.069 14 C 0.046 3.954 15 C -0.167 4.167 16 C -0.062 4.062 17 N -0.199 5.199 18 C -0.065 4.065 19 C -0.161 4.161 20 N -0.110 5.110 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.231 0.769 25 H 0.162 0.838 26 H 0.175 0.825 27 H 0.174 0.826 28 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.404 -9.516 -1.724 12.179 hybrid contribution -0.812 1.532 0.749 1.889 sum 6.592 -7.984 -0.976 10.399 Atomic orbital electron populations 1.69892 1.06067 1.28071 1.48932 1.24932 0.95015 0.99645 0.94192 0.86347 0.79402 0.81507 0.79078 1.19779 1.20878 1.19942 1.21139 0.93909 0.89174 1.53284 0.91328 1.19921 0.85608 0.81185 0.99914 1.51190 1.22685 1.20155 1.17684 1.25810 0.97138 0.86298 0.96837 1.70295 1.10459 1.31796 1.15250 1.21965 0.97848 0.92902 0.94186 1.17814 0.90898 0.93529 0.93168 1.22285 0.97253 1.01669 0.95479 1.22635 0.93021 0.91505 0.99032 1.67594 1.30188 1.09869 1.12235 1.22644 0.93334 0.99180 0.91355 1.22206 0.96915 0.95492 1.01524 1.78208 1.01764 1.16373 1.14624 0.92026 0.93075 0.91931 0.76882 0.83834 0.82491 0.82571 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.17 13.29 55.43 0.74 -23.44 15 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 15 3 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 15 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 15 5 H -0.28 -6.29 7.11 56.52 0.40 -5.88 15 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.54 -14.23 9.26 -34.44 -0.32 -14.55 15 8 H 0.07 1.89 7.81 -52.49 -0.41 1.48 15 9 C 0.25 5.94 6.30 -5.19 -0.03 5.91 15 10 N -0.33 -7.10 3.68 -63.82 -0.24 -7.34 15 11 C 0.24 4.31 12.61 -90.69 -1.14 3.17 15 12 N -0.55 -10.48 10.92 -12.38 -0.14 -10.62 15 13 C 0.21 4.16 7.80 -156.62 -1.22 2.94 15 14 C 0.06 0.95 5.91 -104.58 -0.62 0.33 15 15 C -0.14 -2.19 9.78 -39.11 -0.38 -2.57 15 16 C 0.09 1.25 11.17 -17.61 -0.20 1.05 15 17 N -0.49 -6.76 10.35 -13.34 -0.14 -6.90 15 18 C 0.09 1.15 11.17 -17.61 -0.20 0.95 15 19 C -0.14 -1.97 9.78 -39.11 -0.38 -2.35 15 20 N -0.28 -6.17 12.28 32.10 0.39 -5.77 15 21 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 22 H 0.05 1.28 8.14 -51.93 -0.42 0.86 15 23 H 0.06 1.41 8.09 -51.93 -0.42 0.99 15 24 H 0.21 2.87 8.06 -52.49 -0.42 2.44 15 25 H 0.14 2.18 7.92 -52.49 -0.42 1.76 15 26 H 0.16 1.58 8.06 -52.49 -0.42 1.16 15 27 H 0.16 1.43 8.06 -52.48 -0.42 1.00 15 28 H 0.14 1.89 7.93 -52.49 -0.42 1.48 15 LS Contribution 263.00 15.07 3.96 3.96 Total: -1.00 -30.11 263.00 -7.51 -37.63 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -2.49 Total: 0.33 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -4.59 Total: -3.48 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.62 Total: -54.06 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.11 -7.51 -37.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611112779.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.791 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds