Wall clock time and date at job start Sun Mar 29 2020 21:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99820 * 2 1 4 4 H 1.48501 * 109.47402 * 240.00196 * 3 2 1 5 5 H 1.48503 * 109.47233 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47297 * 120.00196 * 3 2 1 7 7 C 1.37874 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00255 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00225 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47470 * 179.97438 * 9 7 2 11 11 C 1.34560 * 126.74354 * 124.99702 * 10 9 7 12 12 N 1.30651 * 108.29120 * 180.20882 * 11 10 9 13 13 C 1.33985 * 109.78922 * 359.60196 * 12 11 10 14 14 C 1.48377 * 125.65388 * 180.16297 * 13 12 11 15 15 C 1.39760 * 120.90813 * 179.97438 * 14 13 12 16 16 C 1.37979 * 119.02157 * 179.70845 * 15 14 13 17 17 N 1.31926 * 120.87867 * 0.57720 * 16 15 14 18 18 C 1.31924 * 122.00472 * 359.71791 * 17 16 15 19 19 C 1.37974 * 120.88325 * 359.97438 * 18 17 16 20 20 N 1.31509 * 108.69813 * 0.40502 * 13 12 11 21 21 H 0.96994 * 120.00179 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47373 * 59.99646 * 9 7 2 23 23 H 1.09001 * 109.46901 * 299.99901 * 9 7 2 24 24 H 1.08002 * 125.85046 * 359.93966 * 11 10 9 25 25 H 1.07994 * 120.48931 * 0.02562 * 15 14 13 26 26 H 1.08001 * 119.56184 * 180.29953 * 16 15 14 27 27 H 1.08007 * 119.55681 * 179.97438 * 18 17 16 28 28 H 1.07998 * 120.49406 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 2.2563 -4.6272 0.8797 12 7 3.2448 -5.4123 0.5428 13 6 3.8454 -4.9389 -0.5573 14 6 5.0059 -5.5584 -1.2436 15 6 5.5559 -4.9779 -2.3898 16 6 6.6387 -5.5838 -2.9933 17 7 7.1465 -6.7008 -2.5088 18 6 6.6536 -7.2841 -1.4330 19 6 5.5753 -6.7417 -0.7646 20 7 3.2393 -3.8313 -0.9251 21 1 -0.4850 0.8400 -0.0004 22 1 0.6249 -2.5564 -0.8919 23 1 0.6242 -2.5575 0.8880 24 1 1.5977 -4.7660 1.7243 25 1 5.1427 -4.0658 -2.7942 26 1 7.0737 -5.1400 -3.8767 27 1 7.1000 -8.1984 -1.0707 28 1 5.1765 -7.2246 0.1153 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611112779.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:33 Heat of formation + Delta-G solvation = 99.693386 kcal Electronic energy + Delta-G solvation = -14597.533195 eV Core-core repulsion = 12035.485110 eV Total energy + Delta-G solvation = -2562.048085 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.95719 -40.85760 -36.15438 -34.61757 -33.36391 -32.32120 -31.70713 -29.31075 -26.05401 -24.70121 -24.35044 -22.52923 -21.71170 -18.77173 -18.49498 -17.29541 -17.05013 -16.61772 -16.56193 -16.18279 -15.39379 -14.89895 -14.62685 -14.50929 -14.34960 -14.02819 -13.37691 -12.91195 -12.69171 -12.59703 -12.35287 -11.98691 -11.44084 -11.03721 -10.84778 -10.66919 -10.55952 -10.12576 -9.93782 -8.40616 -6.53751 -0.22605 0.19053 0.93803 1.36643 1.37916 1.45634 1.57534 2.01060 2.30776 2.92508 2.94143 2.95148 3.53425 3.58995 3.96756 4.07548 4.13690 4.22716 4.65764 4.67641 4.80655 4.88682 4.94611 5.29233 5.33819 5.40165 5.49453 5.70033 5.74999 6.04963 6.53799 6.96170 7.08498 7.17043 8.68159 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.036761 B = 0.005891 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.487582 B = 4751.769281 C = 5312.870613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.555 4.555 8 H 0.050 0.950 9 C 0.266 3.734 10 N -0.352 5.352 11 C 0.248 3.752 12 N -0.555 5.555 13 C 0.216 3.784 14 C 0.023 3.977 15 C -0.155 4.155 16 C 0.102 3.898 17 N -0.497 5.497 18 C 0.102 3.898 19 C -0.136 4.136 20 N -0.325 5.325 21 H 0.274 0.726 22 H 0.028 0.972 23 H 0.074 0.926 24 H 0.260 0.740 25 H 0.134 0.866 26 H 0.188 0.812 27 H 0.196 0.804 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.900 -10.365 -0.516 13.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.593 4.593 8 H 0.068 0.932 9 C 0.147 3.853 10 N -0.141 5.141 11 C -0.048 4.048 12 N -0.284 5.284 13 C -0.063 4.063 14 C 0.013 3.987 15 C -0.177 4.177 16 C -0.054 4.054 17 N -0.207 5.207 18 C -0.055 4.055 19 C -0.158 4.158 20 N -0.156 5.156 21 H 0.084 0.916 22 H 0.046 0.954 23 H 0.091 0.909 24 H 0.275 0.725 25 H 0.152 0.848 26 H 0.205 0.795 27 H 0.213 0.787 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.601 -10.376 -1.345 13.544 hybrid contribution -1.115 1.661 0.623 2.096 sum 7.486 -8.715 -0.722 11.511 Atomic orbital electron populations 1.69956 1.07062 1.29029 1.49297 1.25654 0.95812 1.02517 0.93664 0.85456 0.78379 0.78093 0.78891 1.20029 1.19662 1.19487 1.21298 0.93253 0.90975 1.53745 0.93192 1.19534 0.85555 0.81037 0.99169 1.50987 1.23184 1.20858 1.19052 1.26784 0.96795 0.84547 0.96655 1.70375 1.10865 1.31912 1.15231 1.22590 0.97842 0.91990 0.93922 1.18060 0.91105 0.95173 0.94382 1.22319 0.98126 1.01710 0.95509 1.23053 0.91929 0.91057 0.99399 1.67724 1.30279 1.09968 1.12684 1.23234 0.92197 0.99768 0.90279 1.22355 0.97131 0.94476 1.01821 1.78150 1.03090 1.18205 1.16165 0.91643 0.95363 0.90867 0.72476 0.84822 0.79527 0.78742 0.82877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.73 13.29 21.45 0.28 -49.44 15 2 C 0.03 1.33 5.46 84.65 0.46 1.79 15 3 Si 0.97 42.28 29.54 68.60 2.03 44.30 15 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 15 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 7 C -0.55 -29.95 9.26 25.60 0.24 -29.72 15 8 H 0.05 2.83 7.81 -2.91 -0.02 2.81 15 9 C 0.27 12.83 6.30 85.63 0.54 13.37 15 10 N -0.35 -15.44 3.68 -355.84 -1.31 -16.75 15 11 C 0.25 8.84 12.61 180.37 2.27 11.11 15 12 N -0.56 -20.77 10.92 -193.09 -2.11 -22.88 15 13 C 0.22 8.61 7.80 137.45 1.07 9.69 15 14 C 0.02 0.77 5.91 -19.84 -0.12 0.66 15 15 C -0.15 -4.63 9.78 22.58 0.22 -4.41 15 16 C 0.10 2.49 11.17 84.62 0.95 3.44 15 17 N -0.50 -12.40 10.35 -196.12 -2.03 -14.43 15 18 C 0.10 2.25 11.17 84.62 0.95 3.19 15 19 C -0.14 -3.59 9.78 22.58 0.22 -3.37 15 20 N -0.32 -14.82 12.28 -52.36 -0.64 -15.46 15 21 H 0.27 14.02 8.31 -92.71 -0.77 13.25 15 22 H 0.03 1.47 8.14 -2.39 -0.02 1.45 15 23 H 0.07 3.33 8.09 -2.39 -0.02 3.31 15 24 H 0.26 6.29 8.06 -2.91 -0.02 6.27 15 25 H 0.13 4.20 7.92 -2.91 -0.02 4.17 15 26 H 0.19 3.31 8.06 -2.91 -0.02 3.29 15 27 H 0.20 2.72 8.06 -2.91 -0.02 2.70 15 28 H 0.15 3.71 7.93 -2.91 -0.02 3.69 15 Total: -1.00 -64.91 263.00 4.19 -60.72 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 1.17 Total: 8.19 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 6.80 Total: 5.74 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -5.81 Total: -118.96 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -64.91 4.19 -60.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611112779.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.414 kcal (2) G-P(sol) polarization free energy of solvation -64.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds