Wall clock time and date at job start Sun Mar 29 2020 21:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99476 * 2 1 4 4 C 1.52993 * 109.47192 * 180.02562 * 3 2 1 5 5 O 1.42910 * 109.57618 * 300.16082 * 4 3 2 6 6 C 1.53123 * 109.52792 * 180.02562 * 4 3 2 7 7 C 1.53037 * 109.27848 * 182.44034 * 6 4 3 8 8 N 1.46846 * 109.52367 * 59.18032 * 7 6 4 9 9 C 1.46898 * 111.00026 * 174.16006 * 8 7 6 10 10 C 1.50700 * 109.47432 * 64.88962 * 9 8 7 11 11 H 1.07998 * 119.99782 * 354.99210 * 10 9 8 12 12 C 1.37874 * 120.00241 * 174.71994 * 10 9 8 13 13 N 1.31514 * 119.99703 * 0.27681 * 12 10 9 14 14 Si 1.86802 * 119.99888 * 180.27176 * 12 10 9 15 15 H 1.48493 * 109.47366 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46708 * 120.00319 * 14 12 10 17 17 H 1.48499 * 109.46908 * 239.99987 * 14 12 10 18 18 C 1.46852 * 111.19928 * 298.25506 * 8 7 6 19 19 C 1.53040 * 109.52362 * 61.73868 * 18 8 7 20 20 H 1.08994 * 109.46988 * 299.99769 * 1 2 3 21 21 H 1.08993 * 109.47187 * 60.00172 * 1 2 3 22 22 H 1.09003 * 109.46594 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47282 * 60.00052 * 3 2 1 24 24 H 1.09005 * 109.47524 * 299.99987 * 3 2 1 25 25 H 0.96703 * 113.99704 * 59.83457 * 5 4 3 26 26 H 1.08996 * 109.50025 * 62.49611 * 6 4 3 27 27 H 1.08999 * 109.49670 * 302.37752 * 6 4 3 28 28 H 1.08994 * 109.46349 * 299.16182 * 7 6 4 29 29 H 1.09001 * 109.45886 * 179.18743 * 7 6 4 30 30 H 1.09000 * 109.47200 * 304.88401 * 9 8 7 31 31 H 1.09004 * 109.47414 * 184.88826 * 9 8 7 32 32 H 0.97000 * 119.99834 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.46494 * 181.75986 * 18 8 7 34 34 H 1.09000 * 109.45908 * 301.72921 * 18 8 7 35 35 H 1.08994 * 109.50479 * 180.88230 * 19 18 8 36 36 H 1.08998 * 109.49559 * 60.76697 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 8 3.9598 0.4725 1.1633 6 6 4.1594 2.5831 0.0000 7 6 5.6832 2.4564 -0.0622 8 7 6.0660 1.7306 -1.2800 9 6 7.5257 1.7103 -1.4438 10 6 8.1467 0.9239 -0.3183 11 1 7.5290 0.5520 0.4858 12 6 9.5027 0.6742 -0.3178 13 7 10.2550 1.1271 -1.2968 14 14 10.2712 -0.3071 1.0736 15 1 9.2175 -0.6996 2.0434 16 1 10.9150 -1.5265 0.5224 17 1 11.2921 0.5242 1.7605 18 6 5.5174 0.3684 -1.2809 19 6 3.9886 0.4327 -1.2550 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3632 -1.0277 -0.0005 23 1 1.6885 1.8464 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 3.6016 -0.4234 1.2285 26 1 3.8747 3.1082 0.9118 27 1 3.8049 3.1401 -0.8673 28 1 6.0383 1.9112 0.8123 29 1 6.1300 3.4505 -0.0764 30 1 7.9074 2.7311 -1.4277 31 1 7.7781 1.2431 -2.3958 32 1 11.2090 0.9518 -1.2963 33 1 5.8438 -0.1541 -2.1801 34 1 5.8733 -0.1670 -0.4006 35 1 3.5820 -0.5785 -1.2399 36 1 3.6315 0.9559 -2.1420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611153216.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:26 Heat of formation + Delta-G solvation = -100.791637 kcal Electronic energy + Delta-G solvation = -16992.594472 eV Core-core repulsion = 14283.510039 eV Total energy + Delta-G solvation = -2709.084433 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.44117 -37.42030 -35.52601 -32.82012 -31.45634 -30.24037 -28.28054 -26.44645 -25.17199 -22.68326 -22.48683 -20.72819 -19.18047 -16.66826 -16.45174 -16.16616 -15.80016 -15.26260 -14.69440 -14.21407 -13.98835 -13.58578 -13.36629 -13.11197 -12.51238 -12.05003 -11.81698 -11.60040 -11.52289 -11.25454 -11.00446 -10.69749 -10.58212 -10.53687 -10.25858 -9.88100 -9.82455 -9.68983 -9.50606 -9.23445 -8.36799 -7.05880 -5.95622 -4.04075 3.31513 3.39395 3.45147 3.62895 4.47362 4.49261 4.92610 5.08817 5.14581 5.16098 5.18911 5.30907 5.35076 5.46195 5.51611 5.56514 5.84168 6.09094 6.16641 6.19940 6.31280 6.38328 6.58438 6.74977 6.93026 7.00088 7.05624 7.37316 7.60728 7.97743 8.01514 8.16124 8.38940 8.40565 9.07766 9.62666 11.09232 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.043244 B = 0.006532 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.333140 B = 4285.630464 C = 4517.152270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.036 3.964 4 C 0.141 3.859 5 O -0.549 6.549 6 C -0.101 4.101 7 C 0.067 3.933 8 N -0.543 5.543 9 C 0.186 3.814 10 C -0.545 4.545 11 H 0.060 0.940 12 C 0.063 3.937 13 N -0.894 5.894 14 Si 0.888 3.112 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.068 3.932 19 C -0.136 4.136 20 H 0.039 0.961 21 H 0.039 0.961 22 H 0.084 0.916 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.375 0.625 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.026 0.974 31 H 0.033 0.967 32 H 0.260 0.740 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.290 -0.269 1.896 17.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.041 4.041 4 C 0.100 3.900 5 O -0.355 6.355 6 C -0.139 4.139 7 C -0.062 4.062 8 N -0.268 5.268 9 C 0.061 3.939 10 C -0.584 4.584 11 H 0.078 0.922 12 C -0.139 4.139 13 N -0.533 5.533 14 Si 0.716 3.284 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.061 4.061 19 C -0.174 4.174 20 H 0.057 0.943 21 H 0.058 0.942 22 H 0.103 0.897 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.222 0.778 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.870 0.389 1.531 16.944 hybrid contribution 0.328 -1.263 1.288 1.834 sum -16.542 -0.874 2.819 16.803 Atomic orbital electron populations 1.22715 0.81234 1.02567 0.99814 1.87819 1.19570 1.28122 1.95396 1.23402 0.95410 0.84746 1.00531 1.21268 0.88681 0.93794 0.86298 1.86551 1.74478 1.30988 1.43465 1.21599 0.97697 0.93045 1.01540 1.21747 0.91969 0.98752 0.93690 1.62490 1.14840 1.14367 1.35078 1.19740 0.80541 0.96955 0.96710 1.21854 0.93275 1.34692 1.08553 0.92172 1.24966 0.97357 0.95772 0.95799 1.69961 1.05645 1.45939 1.31730 0.86600 0.79310 0.79953 0.82568 1.19760 1.21035 1.21021 1.21759 0.91496 0.91651 1.01151 1.22223 0.97896 1.00092 0.97204 0.94258 0.94190 0.89745 0.92905 0.92627 0.77788 0.91788 0.90569 0.93390 0.91825 0.95548 0.94842 0.92988 0.91953 0.93587 0.91592 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.85 9.59 -44.82 -0.43 -5.28 16 3 C 0.04 0.45 5.06 37.15 0.19 0.64 16 4 C 0.14 2.16 0.80 -90.50 -0.07 2.09 16 5 O -0.55 -9.22 11.84 -44.82 -0.53 -9.75 16 6 C -0.10 -1.62 5.11 -26.65 -0.14 -1.75 16 7 C 0.07 1.37 4.98 -3.83 -0.02 1.35 16 8 N -0.54 -12.08 4.86 -236.11 -1.15 -13.23 16 9 C 0.19 4.94 5.12 -4.98 -0.03 4.92 16 10 C -0.54 -15.44 7.72 -34.44 -0.27 -15.71 16 11 H 0.06 1.73 5.86 -52.49 -0.31 1.42 16 12 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 13 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 14 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 15 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 C 0.07 1.40 4.90 -3.83 -0.02 1.38 16 19 C -0.14 -2.22 4.90 -26.65 -0.13 -2.35 16 20 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 21 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 22 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.37 5.29 8.57 45.56 0.39 5.68 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 1.11 6.48 -51.93 -0.34 0.77 16 29 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 30 H 0.03 0.74 8.08 -51.93 -0.42 0.32 16 31 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.06 1.30 8.12 -51.93 -0.42 0.88 16 34 H 0.05 1.05 6.34 -51.93 -0.33 0.72 16 35 H 0.07 1.01 7.77 -51.93 -0.40 0.61 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 286.39 15.07 4.32 4.32 Total: -1.00 -31.00 286.39 -6.73 -37.73 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.19 Total: 1.60 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 0.53 Total: -6.31 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: -0.41 Total: -39.33 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.96 Total: -15.03 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.00 -6.73 -37.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611153216.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.064 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds