Wall clock time and date at job start Sun Mar 29 2020 21:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 113.99476 * 2 1 4 4 C 1.52993 * 109.47192 * 180.02562 * 3 2 1 5 5 O 1.42910 * 109.57618 * 300.16082 * 4 3 2 6 6 C 1.53123 * 109.52792 * 180.02562 * 4 3 2 7 7 C 1.53037 * 109.27848 * 182.44034 * 6 4 3 8 8 N 1.46846 * 109.52367 * 59.18032 * 7 6 4 9 9 C 1.46898 * 111.00026 * 174.16006 * 8 7 6 10 10 C 1.50700 * 109.47432 * 64.88962 * 9 8 7 11 11 H 1.07998 * 119.99782 * 354.99210 * 10 9 8 12 12 C 1.37874 * 120.00241 * 174.71994 * 10 9 8 13 13 N 1.31514 * 119.99703 * 0.27681 * 12 10 9 14 14 Si 1.86802 * 119.99888 * 180.27176 * 12 10 9 15 15 H 1.48493 * 109.47366 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46708 * 120.00319 * 14 12 10 17 17 H 1.48499 * 109.46908 * 239.99987 * 14 12 10 18 18 C 1.46852 * 111.19928 * 298.25506 * 8 7 6 19 19 C 1.53040 * 109.52362 * 61.73868 * 18 8 7 20 20 H 1.08994 * 109.46988 * 299.99769 * 1 2 3 21 21 H 1.08993 * 109.47187 * 60.00172 * 1 2 3 22 22 H 1.09003 * 109.46594 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47282 * 60.00052 * 3 2 1 24 24 H 1.09005 * 109.47524 * 299.99987 * 3 2 1 25 25 H 0.96703 * 113.99704 * 59.83457 * 5 4 3 26 26 H 1.08996 * 109.50025 * 62.49611 * 6 4 3 27 27 H 1.08999 * 109.49670 * 302.37752 * 6 4 3 28 28 H 1.08994 * 109.46349 * 299.16182 * 7 6 4 29 29 H 1.09001 * 109.45886 * 179.18743 * 7 6 4 30 30 H 1.09000 * 109.47200 * 304.88401 * 9 8 7 31 31 H 1.09004 * 109.47414 * 184.88826 * 9 8 7 32 32 H 0.97000 * 119.99834 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.46494 * 181.75986 * 18 8 7 34 34 H 1.09000 * 109.45908 * 301.72921 * 18 8 7 35 35 H 1.08994 * 109.50479 * 180.88230 * 19 18 8 36 36 H 1.08998 * 109.49559 * 60.76697 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 8 3.9598 0.4725 1.1633 6 6 4.1594 2.5831 0.0000 7 6 5.6832 2.4564 -0.0622 8 7 6.0660 1.7306 -1.2800 9 6 7.5257 1.7103 -1.4438 10 6 8.1467 0.9239 -0.3183 11 1 7.5290 0.5520 0.4858 12 6 9.5027 0.6742 -0.3178 13 7 10.2550 1.1271 -1.2968 14 14 10.2712 -0.3071 1.0736 15 1 9.2175 -0.6996 2.0434 16 1 10.9150 -1.5265 0.5224 17 1 11.2921 0.5242 1.7605 18 6 5.5174 0.3684 -1.2809 19 6 3.9886 0.4327 -1.2550 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3632 -1.0277 -0.0005 23 1 1.6885 1.8464 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 3.6016 -0.4234 1.2285 26 1 3.8747 3.1082 0.9118 27 1 3.8049 3.1401 -0.8673 28 1 6.0383 1.9112 0.8123 29 1 6.1300 3.4505 -0.0764 30 1 7.9074 2.7311 -1.4277 31 1 7.7781 1.2431 -2.3958 32 1 11.2090 0.9518 -1.2963 33 1 5.8438 -0.1541 -2.1801 34 1 5.8733 -0.1670 -0.4006 35 1 3.5820 -0.5785 -1.2399 36 1 3.6315 0.9559 -2.1420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611153216.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:26 Heat of formation + Delta-G solvation = -125.012987 kcal Electronic energy + Delta-G solvation = -16993.644789 eV Core-core repulsion = 14283.510039 eV Total energy + Delta-G solvation = -2710.134750 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.74779 -38.56988 -36.98661 -34.81423 -33.04369 -31.73950 -29.68140 -27.82560 -26.54993 -24.42755 -23.98879 -22.30472 -20.69514 -18.62762 -17.51794 -17.26220 -17.06491 -16.70874 -16.27171 -15.80662 -15.52842 -15.23982 -14.71853 -14.36639 -14.18867 -13.46649 -13.23064 -13.19382 -12.97493 -12.82188 -12.48703 -12.29730 -12.28929 -12.17593 -11.96488 -11.73235 -11.64689 -11.13771 -10.63474 -10.61648 -10.56712 -9.00210 -8.15545 -6.35213 1.34163 1.35254 1.48243 2.36852 2.76480 3.08089 3.27002 3.49455 3.83077 3.88773 4.07032 4.36751 4.43551 4.48087 4.59765 4.61468 4.63044 4.73221 4.80190 4.88332 4.93170 4.96526 5.05371 5.20190 5.26412 5.32108 5.34495 5.42459 5.74563 6.06718 6.20055 6.27894 6.57109 6.86306 6.88921 7.36067 8.86546 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.043244 B = 0.006532 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.333140 B = 4285.630464 C = 4517.152270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.047 3.953 4 C 0.138 3.862 5 O -0.570 6.570 6 C -0.095 4.095 7 C 0.068 3.932 8 N -0.539 5.539 9 C 0.198 3.802 10 C -0.554 4.554 11 H 0.052 0.948 12 C 0.011 3.989 13 N -0.926 5.926 14 Si 0.957 3.043 15 H -0.272 1.272 16 H -0.275 1.275 17 H -0.275 1.275 18 C 0.070 3.930 19 C -0.124 4.124 20 H 0.048 0.952 21 H 0.051 0.949 22 H 0.096 0.904 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.384 0.616 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.016 0.984 29 H 0.059 0.941 30 H 0.004 0.996 31 H 0.007 0.993 32 H 0.265 0.735 33 H 0.050 0.950 34 H 0.018 0.982 35 H 0.078 0.922 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.242 -0.503 2.615 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.030 4.030 4 C 0.097 3.903 5 O -0.377 6.377 6 C -0.132 4.132 7 C -0.061 4.061 8 N -0.263 5.263 9 C 0.071 3.929 10 C -0.593 4.593 11 H 0.070 0.930 12 C -0.188 4.188 13 N -0.566 5.566 14 Si 0.782 3.218 15 H -0.196 1.196 16 H -0.201 1.201 17 H -0.201 1.201 18 C -0.059 4.059 19 C -0.162 4.162 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.115 0.885 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.233 0.767 26 H 0.101 0.899 27 H 0.115 0.885 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.022 0.978 31 H 0.025 0.975 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.036 0.964 35 H 0.097 0.903 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.851 0.151 2.251 18.985 hybrid contribution 0.913 -1.194 1.041 1.829 sum -17.938 -1.044 3.293 18.267 Atomic orbital electron populations 1.22918 0.79310 1.03799 1.00835 1.87781 1.21610 1.27985 1.95604 1.23178 0.92728 0.85230 1.01871 1.21302 0.91085 0.92776 0.85146 1.86527 1.75229 1.31892 1.44063 1.21569 0.93846 0.94322 1.03487 1.21767 0.95547 0.97515 0.91252 1.62449 1.11941 1.15623 1.36241 1.19422 0.83493 0.94964 0.95026 1.22000 0.93654 1.34906 1.08698 0.93011 1.25804 0.97858 0.96779 0.98332 1.70068 1.06134 1.46982 1.33460 0.85520 0.78315 0.78624 0.79316 1.19647 1.20077 1.20084 1.21760 0.94770 0.90094 0.99229 1.22127 0.94009 1.01463 0.98585 0.93305 0.93056 0.88544 0.91881 0.90916 0.76691 0.89902 0.88484 0.96581 0.92294 0.97760 0.97494 0.92569 0.93131 0.96365 0.90298 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.41 -8.90 9.59 -139.82 -1.34 -10.24 16 3 C 0.05 1.00 5.06 71.98 0.36 1.37 16 4 C 0.14 3.93 0.80 -10.72 -0.01 3.92 16 5 O -0.57 -18.45 11.84 -139.82 -1.66 -20.11 16 6 C -0.09 -2.84 5.11 30.65 0.16 -2.68 16 7 C 0.07 2.77 4.98 86.33 0.43 3.20 16 8 N -0.54 -24.41 4.86 -900.92 -4.38 -28.79 16 9 C 0.20 10.94 5.12 85.56 0.44 11.38 16 10 C -0.55 -32.33 7.72 25.60 0.20 -32.13 16 11 H 0.05 3.07 5.86 -2.91 -0.02 3.05 16 12 C 0.01 0.67 5.46 84.65 0.46 1.13 16 13 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 14 Si 0.96 45.78 29.54 68.60 2.03 47.80 16 15 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 18 C 0.07 2.91 4.90 86.33 0.42 3.33 16 19 C -0.12 -3.84 4.90 30.65 0.15 -3.69 16 20 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 21 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 22 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.38 10.40 8.57 -74.06 -0.63 9.76 16 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.02 0.75 6.48 -2.39 -0.02 0.74 16 29 H 0.06 2.41 8.08 -2.39 -0.02 2.39 16 30 H 0.00 0.25 8.08 -2.39 -0.02 0.23 16 31 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.05 2.17 8.12 -2.39 -0.02 2.15 16 34 H 0.02 0.85 6.34 -2.39 -0.02 0.84 16 35 H 0.08 2.26 7.77 -2.39 -0.02 2.24 16 36 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -67.56 286.39 -0.78 -68.34 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.42 Total: 11.90 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 3.86 Total: -12.53 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -4.09 Total: -85.16 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -3.00 Total: -30.35 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -67.56 -0.78 -68.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611153216.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.668 kcal (2) G-P(sol) polarization free energy of solvation -67.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds