Wall clock time and date at job start Sun Mar 29 2020 21:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00166 * 2 1 4 4 C 1.53003 * 109.47382 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.46990 * 65.00095 * 4 3 2 6 6 C 1.42898 * 114.00296 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.49636 * 29.99502 * 6 5 4 8 8 C 1.53042 * 109.50382 * 150.06297 * 6 5 4 9 9 C 1.53035 * 109.54016 * 181.34848 * 8 6 5 10 10 C 1.53198 * 109.31101 * 298.63466 * 9 8 6 11 11 N 1.46918 * 108.77600 * 54.63661 * 10 9 8 12 12 C 1.36936 * 120.63317 * 126.36831 * 11 10 9 13 13 H 1.08004 * 119.99773 * 332.62168 * 12 11 10 14 14 C 1.38811 * 120.00392 * 152.61685 * 12 11 10 15 15 N 1.31621 * 120.00206 * 159.36303 * 14 12 11 16 16 Si 1.86803 * 120.00032 * 339.37147 * 14 12 11 17 17 H 1.48501 * 109.47108 * 92.93318 * 16 14 12 18 18 H 1.48493 * 109.46880 * 212.93502 * 16 14 12 19 19 H 1.48504 * 109.46709 * 332.93417 * 16 14 12 20 20 C 1.46929 * 118.73720 * 306.39015 * 11 10 9 21 21 H 1.09006 * 109.47104 * 179.97438 * 1 2 3 22 22 H 1.08990 * 109.47139 * 300.00231 * 1 2 3 23 23 H 1.09003 * 109.47017 * 60.00305 * 1 2 3 24 24 H 1.08998 * 109.46936 * 60.00131 * 3 2 1 25 25 H 1.09003 * 109.46852 * 299.99896 * 3 2 1 26 26 H 1.09000 * 109.46744 * 305.00334 * 4 3 2 27 27 H 1.08998 * 109.47203 * 184.99733 * 4 3 2 28 28 H 1.09000 * 109.46085 * 301.37455 * 8 6 5 29 29 H 1.09002 * 109.45544 * 61.32556 * 8 6 5 30 30 H 1.08992 * 109.49639 * 58.58448 * 9 8 6 31 31 H 1.09004 * 109.49745 * 178.65468 * 9 8 6 32 32 H 1.08996 * 109.58441 * 174.42490 * 10 9 8 33 33 H 1.08994 * 109.58665 * 294.70326 * 10 9 8 34 34 H 0.97000 * 119.99963 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.58558 * 293.81761 * 20 11 10 36 36 H 1.09009 * 109.58216 * 173.39792 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3821 0.4187 -1.3216 7 1 5.8050 0.2819 -0.3263 8 6 5.6970 -0.8064 -2.1832 9 6 7.2130 -0.9987 -2.2648 10 6 7.8451 0.2313 -2.9239 11 7 7.4279 1.4306 -2.1849 12 6 8.3584 2.3132 -1.7049 13 1 9.3527 1.9697 -1.4601 14 6 8.0239 3.6494 -1.5332 15 7 8.7312 4.4058 -0.7207 16 14 6.5696 4.3741 -2.4549 17 1 5.3522 4.2822 -1.6095 18 1 6.8451 5.7982 -2.7729 19 1 6.3556 3.6179 -3.7149 20 6 5.9934 1.6647 -1.9701 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6886 1.8463 0.8900 25 1 1.6886 1.8463 -0.8900 26 1 3.8507 0.5685 0.8427 27 1 3.9785 2.1765 0.0902 28 1 5.2422 -1.6907 -1.7370 29 1 5.2953 -0.6582 -3.1856 30 1 7.6186 -1.1222 -1.2607 31 1 7.4358 -1.8852 -2.8587 32 1 8.9311 0.1437 -2.8952 33 1 7.5116 0.3030 -3.9591 34 1 8.4971 5.3394 -0.6005 35 1 5.5069 1.8548 -2.9268 36 1 5.8578 2.5230 -1.3119 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611176548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:11 Heat of formation + Delta-G solvation = -71.923529 kcal Electronic energy + Delta-G solvation = -16829.127446 eV Core-core repulsion = 14121.294828 eV Total energy + Delta-G solvation = -2707.832618 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.74103 -37.74408 -36.05050 -32.95053 -30.84868 -30.45203 -28.75134 -26.28675 -25.24888 -22.90631 -22.15378 -21.64931 -19.39698 -17.05213 -16.56009 -16.53856 -15.70099 -15.31549 -14.96833 -14.44437 -14.14189 -13.77101 -13.36951 -13.04860 -12.61497 -12.44691 -12.31651 -12.03201 -11.57216 -11.49351 -11.08402 -10.78039 -10.67148 -10.51768 -10.22218 -10.01621 -9.77591 -9.68168 -9.52395 -9.08426 -8.56007 -6.96627 -5.96542 -3.32145 3.31106 3.47920 3.53383 3.75749 3.94209 4.52508 5.03538 5.03709 5.20100 5.26888 5.30126 5.31569 5.35131 5.52271 5.52989 5.57568 5.70174 5.74223 5.82657 5.89433 6.00075 6.19049 6.33212 6.39654 6.58124 6.59836 6.65928 6.72401 6.93475 7.11315 7.63763 7.97738 8.31901 8.93327 9.71016 10.09409 11.19255 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.008458 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.222948 B = 3309.550521 C = 4084.090667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.064 3.936 4 C 0.063 3.937 5 O -0.381 6.381 6 C 0.072 3.928 7 H 0.062 0.938 8 C -0.105 4.105 9 C -0.133 4.133 10 C 0.145 3.855 11 N -0.603 5.603 12 C -0.260 4.260 13 H 0.087 0.913 14 C 0.023 3.977 15 N -0.908 5.908 16 Si 0.881 3.119 17 H -0.290 1.290 18 H -0.303 1.303 19 H -0.270 1.270 20 C 0.110 3.890 21 H 0.083 0.917 22 H 0.038 0.962 23 H 0.040 0.960 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.262 0.738 35 H 0.032 0.968 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.656 -8.171 0.451 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.012 4.012 4 C -0.014 4.014 5 O -0.300 6.300 6 C 0.013 3.987 7 H 0.080 0.920 8 C -0.142 4.142 9 C -0.172 4.172 10 C 0.019 3.981 11 N -0.329 5.329 12 C -0.388 4.388 13 H 0.105 0.895 14 C -0.175 4.175 15 N -0.551 5.551 16 Si 0.712 3.288 17 H -0.217 1.217 18 H -0.231 1.231 19 H -0.195 1.195 20 C -0.016 4.016 21 H 0.102 0.898 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.618 -8.227 0.369 15.067 hybrid contribution -0.914 0.964 -0.205 1.344 sum -13.532 -7.262 0.165 15.358 Atomic orbital electron populations 1.22717 0.81600 1.02539 0.99710 1.87972 1.19147 1.27708 1.95339 1.22605 0.92924 0.85064 1.00640 1.22502 0.92541 0.98187 0.88217 1.87874 1.23007 1.81595 1.37485 1.22809 0.79571 0.96920 0.99382 0.92030 1.21445 0.96359 0.96445 0.99989 1.22025 0.94663 0.98935 1.01614 1.20987 0.98166 0.85674 0.93228 1.44301 1.00773 1.24704 1.63078 1.18946 0.95065 0.87909 1.36893 0.89516 1.25281 0.97655 0.96034 0.98571 1.69840 1.41789 1.07498 1.35935 0.86977 0.82387 0.77691 0.81772 1.21738 1.23076 1.19477 1.21782 0.85326 0.96184 0.98307 0.89808 0.94374 0.94177 0.92058 0.92463 0.92611 0.91649 0.92407 0.91901 0.91900 0.92086 0.91732 0.95805 0.92768 0.94982 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.55 10.67 -40.08 -0.43 -5.98 16 3 C 0.06 0.88 6.32 37.16 0.23 1.11 16 4 C 0.06 1.01 6.13 37.16 0.23 1.24 16 5 O -0.38 -7.25 9.96 -40.08 -0.40 -7.65 16 6 C 0.07 1.43 2.76 -26.61 -0.07 1.35 16 7 H 0.06 1.23 7.79 -51.93 -0.40 0.83 16 8 C -0.10 -1.82 5.54 -26.69 -0.15 -1.97 16 9 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 10 C 0.15 2.92 6.52 -3.71 -0.02 2.90 16 11 N -0.60 -14.76 2.77 -172.32 -0.48 -15.23 16 12 C -0.26 -7.35 10.03 -15.06 -0.15 -7.51 16 13 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 14 C 0.02 0.69 5.23 -17.43 -0.09 0.59 16 15 N -0.91 -27.90 13.97 55.49 0.78 -27.13 16 16 Si 0.88 22.85 24.35 -169.99 -4.14 18.71 16 17 H -0.29 -7.22 6.62 56.52 0.37 -6.85 16 18 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 19 H -0.27 -6.97 6.64 56.52 0.38 -6.60 16 20 C 0.11 2.54 3.82 -3.71 -0.01 2.53 16 21 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 27 H 0.07 1.08 8.03 -51.93 -0.42 0.66 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.03 0.76 7.08 -51.93 -0.37 0.39 16 36 H 0.07 1.75 4.38 -51.92 -0.23 1.52 16 LS Contribution 286.59 15.07 4.32 4.32 Total: -1.00 -31.88 286.59 -5.52 -37.40 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -6.09 Total: -3.70 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 0.91 Total: -0.74 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.30 Total: -42.36 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.83 Total: -13.63 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.14 Total: 18.71 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.88 -5.52 -37.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611176548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.523 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds