Wall clock time and date at job start Sun Mar 29 2020 21:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00166 * 2 1 4 4 C 1.53003 * 109.47382 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.46990 * 65.00095 * 4 3 2 6 6 C 1.42898 * 114.00296 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.49636 * 29.99502 * 6 5 4 8 8 C 1.53042 * 109.50382 * 150.06297 * 6 5 4 9 9 C 1.53035 * 109.54016 * 181.34848 * 8 6 5 10 10 C 1.53198 * 109.31101 * 298.63466 * 9 8 6 11 11 N 1.46918 * 108.77600 * 54.63661 * 10 9 8 12 12 C 1.36936 * 120.63317 * 126.36831 * 11 10 9 13 13 H 1.08004 * 119.99773 * 332.62168 * 12 11 10 14 14 C 1.38811 * 120.00392 * 152.61685 * 12 11 10 15 15 N 1.31621 * 120.00206 * 159.36303 * 14 12 11 16 16 Si 1.86803 * 120.00032 * 339.37147 * 14 12 11 17 17 H 1.48501 * 109.47108 * 92.93318 * 16 14 12 18 18 H 1.48493 * 109.46880 * 212.93502 * 16 14 12 19 19 H 1.48504 * 109.46709 * 332.93417 * 16 14 12 20 20 C 1.46929 * 118.73720 * 306.39015 * 11 10 9 21 21 H 1.09006 * 109.47104 * 179.97438 * 1 2 3 22 22 H 1.08990 * 109.47139 * 300.00231 * 1 2 3 23 23 H 1.09003 * 109.47017 * 60.00305 * 1 2 3 24 24 H 1.08998 * 109.46936 * 60.00131 * 3 2 1 25 25 H 1.09003 * 109.46852 * 299.99896 * 3 2 1 26 26 H 1.09000 * 109.46744 * 305.00334 * 4 3 2 27 27 H 1.08998 * 109.47203 * 184.99733 * 4 3 2 28 28 H 1.09000 * 109.46085 * 301.37455 * 8 6 5 29 29 H 1.09002 * 109.45544 * 61.32556 * 8 6 5 30 30 H 1.08992 * 109.49639 * 58.58448 * 9 8 6 31 31 H 1.09004 * 109.49745 * 178.65468 * 9 8 6 32 32 H 1.08996 * 109.58441 * 174.42490 * 10 9 8 33 33 H 1.08994 * 109.58665 * 294.70326 * 10 9 8 34 34 H 0.97000 * 119.99963 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.58558 * 293.81761 * 20 11 10 36 36 H 1.09009 * 109.58216 * 173.39792 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9658 0.5793 -1.2201 6 6 5.3821 0.4187 -1.3216 7 1 5.8050 0.2819 -0.3263 8 6 5.6970 -0.8064 -2.1832 9 6 7.2130 -0.9987 -2.2648 10 6 7.8451 0.2313 -2.9239 11 7 7.4279 1.4306 -2.1849 12 6 8.3584 2.3132 -1.7049 13 1 9.3527 1.9697 -1.4601 14 6 8.0239 3.6494 -1.5332 15 7 8.7312 4.4058 -0.7207 16 14 6.5696 4.3741 -2.4549 17 1 5.3522 4.2822 -1.6095 18 1 6.8451 5.7982 -2.7729 19 1 6.3556 3.6179 -3.7149 20 6 5.9934 1.6647 -1.9701 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6886 1.8463 0.8900 25 1 1.6886 1.8463 -0.8900 26 1 3.8507 0.5685 0.8427 27 1 3.9785 2.1765 0.0902 28 1 5.2422 -1.6907 -1.7370 29 1 5.2953 -0.6582 -3.1856 30 1 7.6186 -1.1222 -1.2607 31 1 7.4358 -1.8852 -2.8587 32 1 8.9311 0.1437 -2.8952 33 1 7.5116 0.3030 -3.9591 34 1 8.4971 5.3394 -0.6005 35 1 5.5069 1.8548 -2.9268 36 1 5.8578 2.5230 -1.3119 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611176548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:11 Heat of formation + Delta-G solvation = -94.510599 kcal Electronic energy + Delta-G solvation = -16830.106895 eV Core-core repulsion = 14121.294828 eV Total energy + Delta-G solvation = -2708.812067 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.23193 -38.89722 -37.56276 -34.84772 -32.72248 -31.85065 -30.17739 -27.25562 -27.09356 -24.45314 -23.56059 -23.27884 -21.01183 -18.93010 -18.05769 -17.71099 -17.27364 -16.43441 -16.28733 -16.07708 -15.69581 -15.43495 -14.95467 -14.68706 -14.21846 -13.96579 -13.78096 -13.50603 -13.14890 -12.66091 -12.52741 -12.48603 -12.24550 -12.10655 -11.81353 -11.62657 -11.55404 -11.35598 -10.90383 -10.65644 -10.44904 -8.96576 -8.21319 -5.52981 1.23931 1.35907 1.45419 2.36138 2.53857 2.81756 3.06284 3.36610 3.83621 3.99563 4.05910 4.13869 4.17124 4.30415 4.34267 4.40215 4.50539 4.55875 4.59077 4.61287 4.67886 4.84769 4.85279 4.87671 5.00239 5.05602 5.16537 5.21563 5.47959 5.80622 6.09216 6.15852 6.27060 6.87104 7.57213 7.98764 8.98299 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.008458 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.222948 B = 3309.550521 C = 4084.090667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.068 3.932 4 C 0.053 3.947 5 O -0.389 6.389 6 C 0.079 3.921 7 H 0.054 0.946 8 C -0.100 4.100 9 C -0.122 4.122 10 C 0.136 3.864 11 N -0.617 5.617 12 C -0.250 4.250 13 H 0.059 0.941 14 C -0.029 4.029 15 N -0.952 5.952 16 Si 0.939 3.061 17 H -0.277 1.277 18 H -0.306 1.306 19 H -0.267 1.267 20 C 0.109 3.891 21 H 0.097 0.903 22 H 0.055 0.945 23 H 0.046 0.954 24 H 0.089 0.911 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.036 0.964 34 H 0.263 0.737 35 H 0.029 0.971 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.658 -9.633 -0.109 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.008 4.008 4 C -0.024 4.024 5 O -0.307 6.307 6 C 0.020 3.980 7 H 0.072 0.928 8 C -0.138 4.138 9 C -0.161 4.161 10 C 0.012 3.988 11 N -0.344 5.344 12 C -0.380 4.380 13 H 0.077 0.923 14 C -0.225 4.225 15 N -0.598 5.598 16 Si 0.768 3.232 17 H -0.204 1.204 18 H -0.234 1.234 19 H -0.192 1.192 20 C -0.016 4.016 21 H 0.115 0.885 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.107 0.893 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.651 -9.728 -0.206 17.588 hybrid contribution -0.286 1.348 -0.007 1.378 sum -14.937 -8.380 -0.213 17.128 Atomic orbital electron populations 1.22940 0.79422 1.03875 1.00882 1.87914 1.21566 1.28039 1.95597 1.22592 0.90954 0.85277 1.02020 1.22723 0.94622 0.97607 0.87431 1.87871 1.22140 1.81736 1.38988 1.22617 0.80028 0.96259 0.99092 0.92818 1.21453 0.96643 0.95932 0.99776 1.21925 0.94005 0.98548 1.01572 1.21238 0.98562 0.85315 0.93691 1.44449 1.00781 1.25292 1.63833 1.18921 0.94812 0.88644 1.35580 0.92307 1.25835 1.00559 0.96543 0.99520 1.69950 1.44199 1.07814 1.37832 0.86027 0.80074 0.76477 0.80592 1.20410 1.23444 1.19200 1.21752 0.84755 0.97277 0.97844 0.88504 0.92627 0.93538 0.89288 0.92417 0.92092 0.92509 0.90253 0.91502 0.92549 0.88194 0.91947 0.94618 0.92830 0.95278 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -11.00 10.67 -144.35 -1.54 -12.54 16 3 C 0.07 1.71 6.32 71.98 0.45 2.16 16 4 C 0.05 1.64 6.13 71.98 0.44 2.09 16 5 O -0.39 -14.13 9.96 -144.35 -1.44 -15.57 16 6 C 0.08 3.01 2.76 30.67 0.08 3.09 16 7 H 0.05 2.10 7.79 -2.39 -0.02 2.09 16 8 C -0.10 -3.18 5.54 30.62 0.17 -3.01 16 9 C -0.12 -3.75 6.08 30.67 0.19 -3.56 16 10 C 0.14 5.26 6.52 86.37 0.56 5.82 16 11 N -0.62 -29.89 2.77 -699.10 -1.94 -31.83 16 12 C -0.25 -14.38 10.03 84.03 0.84 -13.54 16 13 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 14 C -0.03 -1.74 5.23 84.86 0.44 -1.30 16 15 N -0.95 -60.01 13.97 21.65 0.30 -59.71 16 16 Si 0.94 47.75 24.35 68.60 1.67 49.42 16 17 H -0.28 -13.38 6.62 99.48 0.66 -12.72 16 18 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 19 H -0.27 -13.31 6.64 99.48 0.66 -12.65 16 20 C 0.11 4.95 3.82 86.36 0.33 5.28 16 21 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 22 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.81 8.09 -2.39 -0.02 1.79 16 27 H 0.06 1.84 8.03 -2.39 -0.02 1.82 16 28 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 33 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 35 H 0.03 1.34 7.08 -2.39 -0.02 1.32 16 36 H 0.05 2.34 4.38 -2.38 -0.01 2.33 16 Total: -1.00 -68.56 286.59 2.76 -65.80 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 0.93 Total: 5.72 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 4.77 Total: -1.29 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -1.63 Total: -91.54 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -2.98 Total: -28.11 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.67 Total: 49.42 kcal Total: -68.56 2.76 -65.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611176548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.708 kcal (2) G-P(sol) polarization free energy of solvation -68.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds