Wall clock time and date at job start Sun Mar 29 2020 21:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99897 * 2 1 4 4 C 1.53005 * 109.46950 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47202 * 65.00215 * 4 3 2 6 6 C 1.42894 * 114.00151 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.49968 * 330.00254 * 6 5 4 8 8 C 1.53039 * 109.49911 * 209.93037 * 6 5 4 9 9 C 1.53046 * 109.53848 * 178.68422 * 8 6 5 10 10 C 1.53186 * 109.31197 * 61.36543 * 9 8 6 11 11 N 1.46921 * 108.77865 * 305.36497 * 10 9 8 12 12 C 1.36935 * 120.63331 * 233.60580 * 11 10 9 13 13 H 1.07997 * 119.99812 * 151.82861 * 12 11 10 14 14 C 1.38811 * 120.00050 * 331.83600 * 12 11 10 15 15 N 1.31619 * 119.99988 * 343.06569 * 14 12 11 16 16 Si 1.86801 * 120.00092 * 163.06664 * 14 12 11 17 17 H 1.48501 * 109.46754 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46929 * 119.99528 * 16 14 12 19 19 H 1.48497 * 109.47414 * 239.99852 * 16 14 12 20 20 C 1.46933 * 118.76332 * 53.58965 * 11 10 9 21 21 H 1.09001 * 109.47192 * 59.99882 * 1 2 3 22 22 H 1.08995 * 109.47530 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46905 * 300.00249 * 1 2 3 24 24 H 1.09003 * 109.47093 * 60.00079 * 3 2 1 25 25 H 1.08997 * 109.47233 * 299.99749 * 3 2 1 26 26 H 1.08993 * 109.47309 * 304.99512 * 4 3 2 27 27 H 1.09000 * 109.46687 * 184.99699 * 4 3 2 28 28 H 1.09000 * 109.46433 * 298.70822 * 8 6 5 29 29 H 1.09002 * 109.45803 * 58.66496 * 8 6 5 30 30 H 1.09000 * 109.49770 * 181.32449 * 9 8 6 31 31 H 1.09006 * 109.49500 * 301.41343 * 9 8 6 32 32 H 1.09002 * 109.58549 * 65.15737 * 10 9 8 33 33 H 1.09003 * 109.58545 * 185.57596 * 10 9 8 34 34 H 0.96995 * 120.00309 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.61432 * 186.64057 * 20 11 10 36 36 H 1.08998 * 109.56522 * 66.21127 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2220 6 6 5.3811 0.4203 -1.3251 7 1 5.8782 1.2120 -0.7645 8 6 5.7980 0.4964 -2.7956 9 6 7.3183 0.3585 -2.9044 10 6 7.7442 -1.0050 -2.3511 11 7 7.2219 -1.1452 -0.9851 12 6 8.0582 -1.4587 0.0530 13 1 7.8212 -1.1322 1.0548 14 6 9.2105 -2.1959 -0.1825 15 7 9.3413 -2.8725 -1.3038 16 14 10.5756 -2.2278 1.0922 17 1 10.1857 -1.3920 2.2561 18 1 10.8015 -3.6254 1.5407 19 1 11.8246 -1.6921 0.4936 20 6 5.7852 -0.9423 -0.7532 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6885 1.8464 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 3.8515 0.5683 0.8409 27 1 3.9785 2.1766 0.0889 28 1 5.3195 -0.3103 -3.3510 29 1 5.4897 1.4557 -3.2113 30 1 7.6168 0.4363 -3.9499 31 1 7.7976 1.1505 -2.3289 32 1 7.3391 -1.7974 -2.9804 33 1 8.8323 -1.0690 -2.3347 34 1 10.1463 -3.3880 -1.4682 35 1 5.5807 -0.9645 0.3172 36 1 5.2202 -1.7299 -1.2517 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611176549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:13 Heat of formation + Delta-G solvation = -76.917755 kcal Electronic energy + Delta-G solvation = -16584.243259 eV Core-core repulsion = 13876.194075 eV Total energy + Delta-G solvation = -2708.049184 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.60248 -37.62040 -35.88223 -32.77986 -30.40885 -30.36228 -28.28346 -26.24602 -25.21909 -22.63878 -21.88362 -21.63738 -19.14231 -16.96488 -16.65985 -16.27842 -15.35068 -15.22123 -14.70872 -14.58727 -13.90714 -13.59944 -13.09401 -13.00673 -12.42208 -12.30613 -12.00169 -11.80605 -11.37737 -11.19944 -10.96163 -10.77670 -10.66504 -10.15517 -10.12727 -9.83006 -9.75812 -9.68415 -9.61734 -8.96685 -8.40633 -6.62647 -5.75837 -3.18761 3.38849 3.46329 3.48773 3.77908 3.99034 4.53518 5.03160 5.19303 5.27796 5.30706 5.36130 5.41721 5.52879 5.59724 5.62538 5.68320 5.70955 5.87384 5.95123 6.06606 6.27951 6.43013 6.62124 6.73549 6.83682 6.90900 6.95225 7.15169 7.41160 7.70091 7.73086 7.83488 8.48499 9.24375 9.87397 10.44616 11.32757 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.034127 B = 0.006137 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.268613 B = 4561.137329 C = 5009.735904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.065 3.935 4 C 0.064 3.936 5 O -0.381 6.381 6 C 0.073 3.927 7 H 0.054 0.946 8 C -0.103 4.103 9 C -0.140 4.140 10 C 0.168 3.832 11 N -0.590 5.590 12 C -0.252 4.252 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.902 5.902 16 Si 0.902 3.098 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.131 3.869 21 H 0.039 0.961 22 H 0.084 0.916 23 H 0.037 0.963 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.020 0.980 33 H 0.088 0.912 34 H 0.253 0.747 35 H 0.051 0.949 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.256 9.073 0.551 15.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.012 4.012 4 C -0.013 4.013 5 O -0.300 6.300 6 C 0.014 3.986 7 H 0.072 0.928 8 C -0.141 4.141 9 C -0.179 4.179 10 C 0.042 3.958 11 N -0.314 5.314 12 C -0.382 4.382 13 H 0.083 0.917 14 C -0.196 4.196 15 N -0.546 5.546 16 Si 0.732 3.268 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.215 1.215 20 C 0.005 3.995 21 H 0.057 0.943 22 H 0.103 0.897 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -12.140 8.737 0.370 14.962 hybrid contribution 0.647 0.258 0.829 1.083 sum -11.493 8.995 1.200 14.644 Atomic orbital electron populations 1.22722 0.81613 1.02696 0.99516 1.88029 1.19098 1.27384 1.95266 1.22580 0.93032 0.85290 1.00258 1.22453 0.92523 0.97280 0.89060 1.87896 1.23450 1.81834 1.36786 1.22796 0.79217 0.99258 0.97302 0.92790 1.21458 0.96932 1.00863 0.94862 1.22202 0.93981 1.01908 0.99853 1.20831 1.00430 0.90200 0.84324 1.44026 1.01111 1.81163 1.05107 1.19224 1.02301 1.27554 0.89111 0.91696 1.25046 1.00443 0.96648 0.97477 1.70051 1.27381 1.31473 1.25728 0.86223 0.82253 0.77339 0.80973 1.20277 1.21697 1.21537 1.21293 0.86724 0.93304 0.98223 0.94250 0.89702 0.94459 0.92306 0.92726 0.92443 0.92314 0.91941 0.93255 0.92681 0.92721 0.96232 0.89392 0.93678 0.93012 0.95536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.54 10.67 -40.08 -0.43 -5.97 16 3 C 0.07 0.81 6.32 37.16 0.23 1.04 16 4 C 0.06 0.93 6.13 37.16 0.23 1.16 16 5 O -0.38 -6.96 9.96 -40.08 -0.40 -7.36 16 6 C 0.07 1.43 2.76 -26.61 -0.07 1.35 16 7 H 0.05 1.04 7.79 -51.93 -0.40 0.63 16 8 C -0.10 -1.93 5.54 -26.69 -0.15 -2.08 16 9 C -0.14 -2.78 6.08 -26.61 -0.16 -2.94 16 10 C 0.17 4.14 5.30 -3.72 -0.02 4.12 16 11 N -0.59 -15.43 2.99 -172.32 -0.52 -15.94 16 12 C -0.25 -7.11 9.58 -15.06 -0.14 -7.25 16 13 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 14 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 15 N -0.90 -26.63 11.20 55.49 0.62 -26.01 16 16 Si 0.90 21.91 29.59 -169.99 -5.03 16.89 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 C 0.13 3.02 6.14 -3.70 -0.02 3.00 16 21 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.88 8.03 -51.93 -0.42 0.46 16 27 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 34 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 35 H 0.05 1.17 7.82 -51.93 -0.41 0.77 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 293.03 15.07 4.42 4.42 Total: -1.00 -31.39 293.03 -6.58 -37.96 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -6.16 Total: -3.80 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 0.92 Total: -0.19 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.11 Total: -41.95 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.83 Total: -13.33 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.39 -6.58 -37.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611176549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.954 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds