Wall clock time and date at job start Sun Mar 29 2020 21:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99897 * 2 1 4 4 C 1.53005 * 109.46950 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47202 * 65.00215 * 4 3 2 6 6 C 1.42894 * 114.00151 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.49968 * 330.00254 * 6 5 4 8 8 C 1.53039 * 109.49911 * 209.93037 * 6 5 4 9 9 C 1.53046 * 109.53848 * 178.68422 * 8 6 5 10 10 C 1.53186 * 109.31197 * 61.36543 * 9 8 6 11 11 N 1.46921 * 108.77865 * 305.36497 * 10 9 8 12 12 C 1.36935 * 120.63331 * 233.60580 * 11 10 9 13 13 H 1.07997 * 119.99812 * 151.82861 * 12 11 10 14 14 C 1.38811 * 120.00050 * 331.83600 * 12 11 10 15 15 N 1.31619 * 119.99988 * 343.06569 * 14 12 11 16 16 Si 1.86801 * 120.00092 * 163.06664 * 14 12 11 17 17 H 1.48501 * 109.46754 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46929 * 119.99528 * 16 14 12 19 19 H 1.48497 * 109.47414 * 239.99852 * 16 14 12 20 20 C 1.46933 * 118.76332 * 53.58965 * 11 10 9 21 21 H 1.09001 * 109.47192 * 59.99882 * 1 2 3 22 22 H 1.08995 * 109.47530 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46905 * 300.00249 * 1 2 3 24 24 H 1.09003 * 109.47093 * 60.00079 * 3 2 1 25 25 H 1.08997 * 109.47233 * 299.99749 * 3 2 1 26 26 H 1.08993 * 109.47309 * 304.99512 * 4 3 2 27 27 H 1.09000 * 109.46687 * 184.99699 * 4 3 2 28 28 H 1.09000 * 109.46433 * 298.70822 * 8 6 5 29 29 H 1.09002 * 109.45803 * 58.66496 * 8 6 5 30 30 H 1.09000 * 109.49770 * 181.32449 * 9 8 6 31 31 H 1.09006 * 109.49500 * 301.41343 * 9 8 6 32 32 H 1.09002 * 109.58549 * 65.15737 * 10 9 8 33 33 H 1.09003 * 109.58545 * 185.57596 * 10 9 8 34 34 H 0.96995 * 120.00309 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.61432 * 186.64057 * 20 11 10 36 36 H 1.08998 * 109.56522 * 66.21127 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2220 6 6 5.3811 0.4203 -1.3251 7 1 5.8782 1.2120 -0.7645 8 6 5.7980 0.4964 -2.7956 9 6 7.3183 0.3585 -2.9044 10 6 7.7442 -1.0050 -2.3511 11 7 7.2219 -1.1452 -0.9851 12 6 8.0582 -1.4587 0.0530 13 1 7.8212 -1.1322 1.0548 14 6 9.2105 -2.1959 -0.1825 15 7 9.3413 -2.8725 -1.3038 16 14 10.5756 -2.2278 1.0922 17 1 10.1857 -1.3920 2.2561 18 1 10.8015 -3.6254 1.5407 19 1 11.8246 -1.6921 0.4936 20 6 5.7852 -0.9423 -0.7532 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6885 1.8464 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 3.8515 0.5683 0.8409 27 1 3.9785 2.1766 0.0889 28 1 5.3195 -0.3103 -3.3510 29 1 5.4897 1.4557 -3.2113 30 1 7.6168 0.4363 -3.9499 31 1 7.7976 1.1505 -2.3289 32 1 7.3391 -1.7974 -2.9804 33 1 8.8323 -1.0690 -2.3347 34 1 10.1463 -3.3880 -1.4682 35 1 5.5807 -0.9645 0.3172 36 1 5.2202 -1.7299 -1.2517 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611176549.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:13 Heat of formation + Delta-G solvation = -97.863749 kcal Electronic energy + Delta-G solvation = -16585.151545 eV Core-core repulsion = 13876.194075 eV Total energy + Delta-G solvation = -2708.957470 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.05082 -38.79383 -37.46848 -34.66930 -32.35932 -31.63811 -29.83629 -27.26815 -27.08698 -24.01295 -23.67300 -23.12309 -20.89214 -18.80288 -17.78829 -17.60230 -16.87434 -16.49390 -16.23184 -15.96829 -15.61340 -15.18859 -14.74304 -14.50465 -14.23066 -13.61023 -13.45765 -13.11246 -13.02831 -12.76909 -12.51654 -12.38783 -12.15157 -11.97680 -11.83716 -11.64478 -11.47958 -11.30708 -10.68493 -10.59330 -10.36772 -8.71221 -7.89705 -5.37288 1.46502 1.47342 1.58924 2.46611 2.71213 2.91182 3.25065 3.72130 3.92859 4.08725 4.16468 4.22984 4.32047 4.41706 4.44066 4.49011 4.57455 4.59736 4.64804 4.74395 4.84046 4.87515 4.98655 5.07129 5.10419 5.20593 5.28254 5.49004 5.62189 5.72275 6.23447 6.32958 6.42969 7.11760 7.80531 8.33684 9.17057 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.034127 B = 0.006137 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.268613 B = 4561.137329 C = 5009.735904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.066 3.934 4 C 0.053 3.947 5 O -0.392 6.392 6 C 0.087 3.913 7 H 0.062 0.938 8 C -0.099 4.099 9 C -0.127 4.127 10 C 0.171 3.829 11 N -0.607 5.607 12 C -0.269 4.269 13 H 0.066 0.934 14 C -0.049 4.049 15 N -0.935 5.935 16 Si 0.972 3.028 17 H -0.266 1.266 18 H -0.292 1.292 19 H -0.286 1.286 20 C 0.131 3.869 21 H 0.049 0.951 22 H 0.088 0.912 23 H 0.057 0.943 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.059 0.941 32 H -0.006 1.006 33 H 0.059 0.941 34 H 0.252 0.748 35 H 0.046 0.954 36 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.980 11.052 1.019 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.010 4.010 4 C -0.024 4.024 5 O -0.311 6.311 6 C 0.028 3.972 7 H 0.080 0.920 8 C -0.136 4.136 9 C -0.166 4.166 10 C 0.046 3.954 11 N -0.332 5.332 12 C -0.398 4.398 13 H 0.083 0.917 14 C -0.244 4.244 15 N -0.581 5.581 16 Si 0.799 3.201 17 H -0.190 1.190 18 H -0.219 1.219 19 H -0.212 1.212 20 C 0.005 3.995 21 H 0.068 0.932 22 H 0.106 0.894 23 H 0.076 0.924 24 H 0.109 0.891 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.012 0.988 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -12.899 10.740 0.842 16.806 hybrid contribution 0.770 -0.401 0.712 1.123 sum -12.128 10.339 1.554 16.013 Atomic orbital electron populations 1.22907 0.79560 1.03537 1.01003 1.87967 1.21528 1.28887 1.95610 1.22686 0.91221 0.84915 1.02224 1.22787 0.94503 0.97983 0.87087 1.87889 1.22224 1.82393 1.38602 1.22461 0.80314 0.96699 0.97712 0.92024 1.21421 0.95682 1.02285 0.94262 1.22019 0.95014 0.98428 1.01099 1.20709 0.98503 0.92493 0.83727 1.44283 1.02209 1.81446 1.05223 1.19550 1.03012 1.27488 0.89792 0.91665 1.25859 1.02593 0.96371 0.99590 1.70207 1.27853 1.32334 1.27670 0.85148 0.79013 0.77123 0.78790 1.19020 1.21870 1.21196 1.21358 0.85016 0.95163 0.97970 0.93192 0.89352 0.92449 0.89147 0.91761 0.93839 0.89702 0.92862 0.89905 0.90039 0.92249 0.98778 0.92283 0.93923 0.93583 0.97757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.42 -11.72 10.67 -144.35 -1.54 -13.26 16 3 C 0.07 1.47 6.32 71.98 0.45 1.92 16 4 C 0.05 1.44 6.13 71.98 0.44 1.89 16 5 O -0.39 -13.74 9.96 -144.35 -1.44 -15.18 16 6 C 0.09 3.29 2.76 30.67 0.08 3.38 16 7 H 0.06 2.24 7.79 -2.39 -0.02 2.22 16 8 C -0.10 -3.49 5.54 30.62 0.17 -3.32 16 9 C -0.13 -4.83 6.08 30.67 0.19 -4.65 16 10 C 0.17 8.60 5.30 86.36 0.46 9.06 16 11 N -0.61 -32.30 2.99 -699.09 -2.09 -34.40 16 12 C -0.27 -15.33 9.58 84.03 0.81 -14.53 16 13 H 0.07 3.64 7.88 -2.91 -0.02 3.61 16 14 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 15 N -0.93 -56.55 11.20 21.65 0.24 -56.30 16 16 Si 0.97 45.41 29.59 68.60 2.03 47.43 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 19 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 20 C 0.13 6.12 6.14 86.36 0.53 6.65 16 21 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 1.30 8.03 -2.39 -0.02 1.28 16 27 H 0.09 1.87 8.09 -2.39 -0.02 1.85 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 32 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.06 3.29 6.06 -2.39 -0.01 3.28 16 34 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 35 H 0.05 2.14 7.82 -2.39 -0.02 2.12 16 36 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 Total: -1.00 -68.37 293.03 3.02 -65.35 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 1.02 Total: 6.59 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 4.80 Total: -0.24 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -1.85 Total: -90.70 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -2.98 Total: -28.44 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -68.37 3.02 -65.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611176549.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.510 kcal (2) G-P(sol) polarization free energy of solvation -68.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds