Wall clock time and date at job start Sun Mar 29 2020 21:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34559 * 126.74670 * 124.71150 * 10 9 7 12 12 N 1.30646 * 108.30231 * 179.89024 * 11 10 9 13 13 C 1.33995 * 109.78126 * 0.37960 * 12 11 10 14 14 C 1.48363 * 125.65085 * 179.76602 * 13 12 11 15 15 C 1.39329 * 119.72478 * 359.97438 * 14 13 12 16 16 C 1.38410 * 119.06657 * 180.02562 * 15 14 13 17 17 C 1.38780 * 118.51067 * 0.02562 * 16 15 14 18 18 C 1.38245 * 119.36700 * 0.02562 * 17 16 15 19 19 N 1.31759 * 120.89383 * 359.71779 * 18 17 16 20 20 N 1.31506 * 108.70220 * 359.76629 * 13 12 11 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08004 * 125.85074 * 0.03250 * 11 10 9 25 25 H 1.07995 * 120.46977 * 0.02871 * 15 14 13 26 26 H 1.08006 * 120.74122 * 180.02562 * 16 15 14 27 27 H 1.08003 * 120.31583 * 180.02562 * 17 16 15 28 28 H 1.08005 * 119.55505 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 7 3.9998 -2.5753 0.0106 11 6 4.8507 -3.1314 -0.8711 12 7 5.0423 -4.3770 -0.5267 13 6 4.3237 -4.6604 0.5682 14 6 4.2765 -5.9744 1.2554 15 6 5.0251 -7.0402 0.7604 16 6 4.9706 -8.2602 1.4118 17 6 4.1678 -8.3744 2.5380 18 6 3.4506 -7.2758 2.9737 19 7 3.5243 -6.1242 2.3377 20 7 3.6671 -3.5809 0.9328 21 1 -0.4849 0.8400 0.0004 22 1 3.8786 -0.6821 -0.8838 23 1 3.8711 -0.6785 0.8962 24 1 5.3003 -2.6328 -1.7171 25 1 5.6393 -6.9161 -0.1192 26 1 5.5401 -9.1042 1.0517 27 1 4.1039 -9.3127 3.0691 28 1 2.8245 -7.3615 3.8495 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611192510.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:26 Heat of formation + Delta-G solvation = 127.703800 kcal Electronic energy + Delta-G solvation = -14621.077477 eV Core-core repulsion = 12060.244015 eV Total energy + Delta-G solvation = -2560.833462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.41172 -39.76580 -34.26634 -32.62167 -32.34237 -31.33686 -30.23129 -27.93169 -24.39601 -23.47492 -22.61937 -20.92428 -20.29472 -17.31424 -16.93482 -16.15450 -15.88421 -15.32709 -15.07687 -14.33378 -13.91478 -13.67780 -13.48969 -13.04540 -12.69210 -12.47975 -11.76715 -11.70434 -11.11659 -10.71918 -10.48112 -9.93908 -9.78288 -9.56591 -9.47302 -9.24333 -9.06511 -8.81038 -8.30623 -6.28375 -4.32570 0.93788 1.36749 2.41537 3.06051 3.12885 3.17890 3.24989 3.30917 4.00152 4.17684 4.19314 4.70899 4.86488 4.96871 5.02542 5.12734 5.23711 5.47405 5.59716 5.85475 6.09413 6.15524 6.30369 6.45487 6.65002 6.88540 6.90585 7.23924 7.49465 8.08355 8.25240 8.65452 8.80926 9.24677 10.84166 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.046191 B = 0.005756 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.028246 B = 4863.434964 C = 5277.889880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.079 3.921 3 Si 0.874 3.126 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.086 0.914 9 C 0.226 3.774 10 N -0.332 5.332 11 C 0.235 3.765 12 N -0.546 5.546 13 C 0.218 3.782 14 C 0.225 3.775 15 C -0.135 4.135 16 C -0.081 4.081 17 C -0.176 4.176 18 C 0.101 3.899 19 N -0.458 5.458 20 N -0.242 5.242 21 H 0.270 0.730 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.216 0.784 25 H 0.146 0.854 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.990 -11.465 1.181 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.126 4.126 3 Si 0.700 3.300 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.104 0.896 9 C 0.106 3.894 10 N -0.122 5.122 11 C -0.061 4.061 12 N -0.276 5.276 13 C -0.062 4.062 14 C 0.086 3.914 15 C -0.157 4.157 16 C -0.107 4.107 17 C -0.197 4.197 18 C -0.057 4.057 19 N -0.167 5.167 20 N -0.074 5.074 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.232 0.768 25 H 0.164 0.836 26 H 0.154 0.846 27 H 0.152 0.848 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.034 -10.640 1.918 14.750 hybrid contribution 0.734 0.530 -0.550 1.059 sum 10.768 -10.110 1.368 14.833 Atomic orbital electron populations 1.69869 1.06192 1.27445 1.48487 1.24828 0.94883 0.98812 0.94058 0.86897 0.80432 0.83764 0.78946 1.19601 1.20405 1.18843 1.21048 0.87416 0.95910 1.53450 0.89603 1.20191 0.97941 0.72499 0.98758 1.50895 1.30928 1.12017 1.18395 1.25789 0.93648 0.89859 0.96805 1.70254 1.27737 1.14489 1.15086 1.21637 0.97197 0.93148 0.94180 1.18118 0.93190 0.89130 0.90943 1.22047 0.99839 0.92458 1.01349 1.21514 0.97271 0.97269 0.94606 1.22205 0.98841 1.00460 0.98157 1.22752 0.96901 0.87536 0.98543 1.67609 1.16935 1.25609 1.06573 1.78529 1.19750 0.96014 1.13087 0.92029 0.92794 0.93397 0.76785 0.83620 0.84574 0.84784 0.82443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.37 13.96 55.43 0.77 -25.60 15 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 15 3 Si 0.87 19.70 27.47 -169.99 -4.67 15.03 15 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.26 -5.60 6.54 56.52 0.37 -5.23 15 7 C -0.54 -15.12 9.82 -34.44 -0.34 -15.46 15 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 15 9 C 0.23 5.17 5.37 -5.20 -0.03 5.14 15 10 N -0.33 -7.40 3.68 -63.83 -0.24 -7.63 15 11 C 0.24 4.31 12.61 -90.69 -1.14 3.17 15 12 N -0.55 -10.60 10.80 -12.39 -0.13 -10.74 15 13 C 0.22 4.64 7.86 -156.62 -1.23 3.41 15 14 C 0.22 4.16 6.75 -82.94 -0.56 3.59 15 15 C -0.13 -1.93 9.73 -39.11 -0.38 -2.31 15 16 C -0.08 -0.89 10.17 -39.32 -0.40 -1.29 15 17 C -0.18 -1.87 10.11 -39.38 -0.40 -2.27 15 18 C 0.10 1.36 11.17 -17.58 -0.20 1.16 15 19 N -0.46 -8.41 10.27 -9.78 -0.10 -8.51 15 20 N -0.24 -5.87 12.54 32.10 0.40 -5.47 15 21 H 0.27 7.43 8.31 -40.82 -0.34 7.09 15 22 H 0.05 1.07 7.52 -51.93 -0.39 0.68 15 23 H 0.05 1.10 7.19 -51.93 -0.37 0.72 15 24 H 0.22 2.74 8.06 -52.48 -0.42 2.32 15 25 H 0.15 1.93 7.83 -52.49 -0.41 1.52 15 26 H 0.14 1.02 8.06 -52.48 -0.42 0.59 15 27 H 0.13 0.95 8.06 -52.48 -0.42 0.52 15 28 H 0.16 1.64 8.06 -52.48 -0.42 1.22 15 LS Contribution 259.66 15.07 3.91 3.91 Total: -1.00 -34.08 259.66 -7.28 -41.36 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -2.46 Total: 0.39 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -4.77 Total: -2.75 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.71 Total: -57.95 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.67 Total: 15.03 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -34.08 -7.28 -41.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611192510.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.060 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds