Wall clock time and date at job start Sun Mar 29 2020 21:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34559 * 126.74670 * 124.71150 * 10 9 7 12 12 N 1.30646 * 108.30231 * 179.89024 * 11 10 9 13 13 C 1.33995 * 109.78126 * 0.37960 * 12 11 10 14 14 C 1.48363 * 125.65085 * 179.76602 * 13 12 11 15 15 C 1.39329 * 119.72478 * 359.97438 * 14 13 12 16 16 C 1.38410 * 119.06657 * 180.02562 * 15 14 13 17 17 C 1.38780 * 118.51067 * 0.02562 * 16 15 14 18 18 C 1.38245 * 119.36700 * 0.02562 * 17 16 15 19 19 N 1.31759 * 120.89383 * 359.71779 * 18 17 16 20 20 N 1.31506 * 108.70220 * 359.76629 * 13 12 11 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08004 * 125.85074 * 0.03250 * 11 10 9 25 25 H 1.07995 * 120.46977 * 0.02871 * 15 14 13 26 26 H 1.08006 * 120.74122 * 180.02562 * 16 15 14 27 27 H 1.08003 * 120.31583 * 180.02562 * 17 16 15 28 28 H 1.08005 * 119.55505 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 7 3.9998 -2.5753 0.0106 11 6 4.8507 -3.1314 -0.8711 12 7 5.0423 -4.3770 -0.5267 13 6 4.3237 -4.6604 0.5682 14 6 4.2765 -5.9744 1.2554 15 6 5.0251 -7.0402 0.7604 16 6 4.9706 -8.2602 1.4118 17 6 4.1678 -8.3744 2.5380 18 6 3.4506 -7.2758 2.9737 19 7 3.5243 -6.1242 2.3377 20 7 3.6671 -3.5809 0.9328 21 1 -0.4849 0.8400 0.0004 22 1 3.8786 -0.6821 -0.8838 23 1 3.8711 -0.6785 0.8962 24 1 5.3003 -2.6328 -1.7171 25 1 5.6393 -6.9161 -0.1192 26 1 5.5401 -9.1042 1.0517 27 1 4.1039 -9.3127 3.0691 28 1 2.8245 -7.3615 3.8495 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611192510.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:25 Heat of formation + Delta-G solvation = 103.726019 kcal Electronic energy + Delta-G solvation = -14622.117232 eV Core-core repulsion = 12060.244015 eV Total energy + Delta-G solvation = -2561.873217 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.93052 -40.86221 -36.04625 -34.32889 -33.56841 -32.67936 -31.72364 -29.70260 -25.87261 -24.60853 -24.16751 -22.44661 -21.72424 -19.19303 -18.43468 -17.38265 -17.16289 -16.70140 -16.52200 -15.94629 -15.37558 -14.96065 -14.73313 -14.57929 -14.19848 -13.92457 -13.51204 -12.86479 -12.69157 -12.41833 -12.20948 -11.82362 -11.12054 -11.04545 -10.91183 -10.81533 -10.66475 -10.40033 -9.64669 -8.40905 -6.53510 -0.20574 0.37649 0.94543 1.35044 1.38329 1.48074 1.61501 1.94770 2.27207 2.75199 2.91375 3.00258 3.54047 3.81387 4.03322 4.11310 4.17360 4.24855 4.51171 4.55345 4.77472 4.87992 5.04878 5.14438 5.24146 5.38708 5.40374 5.77457 5.84716 6.25822 6.51845 6.94724 7.09068 7.18173 8.76742 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.046191 B = 0.005756 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.028246 B = 4863.434964 C = 5277.889880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.961 3.039 4 H -0.246 1.246 5 H -0.283 1.283 6 H -0.237 1.237 7 C -0.555 4.555 8 H 0.018 0.982 9 C 0.233 3.767 10 N -0.358 5.358 11 C 0.251 3.749 12 N -0.551 5.551 13 C 0.222 3.778 14 C 0.173 3.827 15 C -0.132 4.132 16 C -0.070 4.070 17 C -0.149 4.149 18 C 0.083 3.917 19 N -0.510 5.510 20 N -0.315 5.315 21 H 0.273 0.727 22 H 0.099 0.901 23 H 0.050 0.950 24 H 0.272 0.728 25 H 0.152 0.848 26 H 0.184 0.816 27 H 0.183 0.817 28 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.867 -12.333 0.693 18.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.170 1.170 5 H -0.208 1.208 6 H -0.160 1.160 7 C -0.593 4.593 8 H 0.037 0.963 9 C 0.113 3.887 10 N -0.148 5.148 11 C -0.044 4.044 12 N -0.281 5.281 13 C -0.059 4.059 14 C 0.035 3.965 15 C -0.154 4.154 16 C -0.096 4.096 17 C -0.169 4.169 18 C -0.075 4.075 19 N -0.220 5.220 20 N -0.146 5.146 21 H 0.083 0.917 22 H 0.117 0.883 23 H 0.068 0.932 24 H 0.287 0.713 25 H 0.170 0.830 26 H 0.201 0.799 27 H 0.200 0.800 28 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 12.931 -11.534 1.421 17.386 hybrid contribution -0.204 0.512 -0.346 0.651 sum 12.728 -11.022 1.075 16.871 Atomic orbital electron populations 1.70063 1.08817 1.29011 1.50198 1.26011 0.95816 1.03832 0.92865 0.85540 0.79397 0.76548 0.80389 1.17033 1.20816 1.16012 1.21183 0.90528 0.93647 1.53902 0.96319 1.20059 0.94246 0.73759 1.00592 1.50785 1.32684 1.11726 1.19603 1.26959 0.91516 0.89448 0.96516 1.70321 1.27938 1.15062 1.14746 1.22401 0.95624 0.93721 0.94106 1.18276 0.96371 0.89253 0.92559 1.22202 0.98904 0.92698 1.01592 1.22069 0.96715 0.96985 0.93796 1.22722 0.95933 1.00988 0.97236 1.23313 0.97862 0.87301 0.99065 1.67461 1.18356 1.28564 1.07656 1.78438 1.22701 0.97702 1.15722 0.91747 0.88329 0.93250 0.71305 0.83013 0.79901 0.79962 0.80315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.87 13.96 21.45 0.30 -58.57 15 2 C 0.01 0.78 5.47 84.66 0.46 1.25 15 3 Si 0.96 40.23 27.47 68.60 1.88 42.11 15 4 H -0.25 -9.36 7.11 99.48 0.71 -8.65 15 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 15 6 H -0.24 -8.85 6.54 99.48 0.65 -8.20 15 7 C -0.55 -32.47 9.82 25.60 0.25 -32.22 15 8 H 0.02 1.30 8.06 -2.91 -0.02 1.27 15 9 C 0.23 10.64 5.37 85.64 0.46 11.10 15 10 N -0.36 -16.23 3.68 -355.85 -1.31 -17.54 15 11 C 0.25 8.92 12.61 180.37 2.27 11.19 15 12 N -0.55 -21.38 10.80 -193.10 -2.09 -23.47 15 13 C 0.22 9.84 7.86 137.45 1.08 10.92 15 14 C 0.17 6.57 6.75 41.98 0.28 6.85 15 15 C -0.13 -3.62 9.73 22.57 0.22 -3.40 15 16 C -0.07 -1.28 10.17 22.44 0.23 -1.05 15 17 C -0.15 -2.60 10.11 22.40 0.23 -2.37 15 18 C 0.08 2.16 11.17 84.71 0.95 3.10 15 19 N -0.51 -19.44 10.27 -184.84 -1.90 -21.34 15 20 N -0.31 -16.15 12.54 -52.37 -0.66 -16.81 15 21 H 0.27 15.66 8.31 -92.71 -0.77 14.89 15 22 H 0.10 3.60 7.52 -2.38 -0.02 3.59 15 23 H 0.05 2.22 7.19 -2.39 -0.02 2.20 15 24 H 0.27 5.88 8.06 -2.91 -0.02 5.85 15 25 H 0.15 3.83 7.83 -2.91 -0.02 3.81 15 26 H 0.18 1.64 8.06 -2.91 -0.02 1.61 15 27 H 0.18 1.46 8.06 -2.91 -0.02 1.44 15 28 H 0.18 3.55 8.06 -2.91 -0.02 3.52 15 Total: -1.00 -83.92 259.66 3.78 -80.14 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 1.12 Total: 10.11 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 6.43 Total: 5.36 kcal Atomic # 7 Polarization: -132.07 SS G_CDS: -5.65 Total: -137.73 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.88 Total: 42.11 kcal Total: -83.92 3.78 -80.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611192510.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.867 kcal (2) G-P(sol) polarization free energy of solvation -83.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds