Wall clock time and date at job start Sun Mar 29 2020 21:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46898 * 110.99907 * 2 1 4 4 C 1.53001 * 109.47206 * 293.95648 * 3 2 1 5 5 C 1.50700 * 109.47195 * 180.02562 * 4 3 2 6 6 H 1.08004 * 120.00000 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00105 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00117 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46857 * 60.00076 * 9 7 5 11 11 H 1.48493 * 109.47103 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47082 * 300.00055 * 9 7 5 13 13 C 1.46893 * 111.00020 * 123.95429 * 2 1 3 14 14 C 1.52996 * 110.56709 * 297.27265 * 13 2 1 15 15 O 1.42895 * 109.47469 * 178.02271 * 14 13 2 16 16 C 1.54512 * 110.51083 * 59.94860 * 13 2 1 17 17 C 1.54474 * 104.06131 * 118.64555 * 16 13 2 18 18 O 1.44427 * 104.80458 * 23.97905 * 17 16 13 19 19 C 1.44426 * 105.27356 * 319.48632 * 18 17 16 20 20 H 1.08996 * 109.46580 * 296.04704 * 1 2 3 21 21 H 1.09000 * 109.46812 * 56.04774 * 1 2 3 22 22 H 1.08996 * 109.46891 * 176.04518 * 1 2 3 23 23 H 1.08999 * 109.47246 * 53.95594 * 3 2 1 24 24 H 1.09000 * 109.46959 * 173.95494 * 3 2 1 25 25 H 1.08999 * 109.46974 * 300.00113 * 4 3 2 26 26 H 1.09000 * 109.47287 * 60.00047 * 4 3 2 27 27 H 0.96997 * 120.00240 * 180.02562 * 8 7 5 28 28 H 1.09009 * 109.47379 * 298.02254 * 14 13 2 29 29 H 1.09007 * 109.47385 * 58.01857 * 14 13 2 30 30 H 0.96703 * 114.00184 * 179.97438 * 15 14 13 31 31 H 1.08999 * 110.51561 * 237.28815 * 16 13 2 32 32 H 1.08992 * 110.51285 * 0.02562 * 16 13 2 33 33 H 1.09006 * 110.37557 * 265.14427 * 17 16 13 34 34 H 1.09004 * 110.37781 * 142.81270 * 17 16 13 35 35 H 1.08996 * 110.36828 * 159.34352 * 19 18 17 36 36 H 1.08996 * 110.37297 * 281.57053 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.1720 3.4642 -1.3185 6 1 2.7201 3.8322 -0.4637 7 6 1.9670 4.2813 -2.4099 8 7 1.3001 3.8330 -3.4510 9 14 2.6365 6.0253 -2.4100 10 1 4.1136 5.9884 -2.2619 11 1 2.2833 6.6910 -3.6894 12 1 2.0443 6.7829 -1.2783 13 6 1.9955 -0.7660 1.1375 14 6 1.5754 -0.1215 2.4600 15 8 2.0601 -0.9094 3.5491 16 6 1.5130 -2.2323 1.0726 17 6 2.8172 -3.0518 0.9558 18 8 3.8383 -2.2035 1.5248 19 6 3.5342 -0.8730 1.0523 20 1 -0.3632 0.4513 0.9233 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0252 -0.0709 23 1 1.5612 1.9273 0.8309 24 1 3.0798 1.3444 0.1082 25 1 2.0658 1.5016 -2.1492 26 1 0.5472 2.0845 -1.4265 27 1 1.1562 4.4077 -4.2190 28 1 1.9938 0.8831 2.5238 29 1 0.4878 -0.0657 2.5077 30 1 1.8305 -0.5591 4.4207 31 1 0.9751 -2.4982 1.9826 32 1 0.8842 -2.3890 0.1962 33 1 3.0396 -3.2643 -0.0899 34 1 2.7349 -3.9791 1.5229 35 1 4.0026 -0.1264 1.6936 36 1 3.8683 -0.7506 0.0221 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611717298.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:57 Heat of formation + Delta-G solvation = -88.304096 kcal Electronic energy + Delta-G solvation = -16984.201476 eV Core-core repulsion = 14275.658543 eV Total energy + Delta-G solvation = -2708.542933 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.04011 -36.82364 -36.03918 -33.18769 -31.23761 -29.35035 -29.04055 -26.01419 -25.36465 -23.67043 -22.40142 -20.40592 -18.72361 -17.65118 -16.45414 -16.04805 -15.74953 -15.21321 -14.88664 -14.52810 -14.04876 -13.87324 -13.39584 -13.07821 -12.44519 -12.29699 -12.18304 -11.81355 -11.30762 -11.18116 -11.03885 -10.88737 -10.77753 -10.66279 -10.56605 -9.99257 -9.79093 -9.45209 -9.38653 -9.17108 -8.36688 -7.86790 -6.03111 -4.06009 3.31098 3.35865 3.37873 3.97437 4.32827 4.38713 4.49287 4.65761 5.07153 5.12072 5.32728 5.36196 5.39147 5.48043 5.58649 5.72792 5.85808 5.89046 5.96050 6.02193 6.09784 6.12181 6.19135 6.35896 6.43383 6.87910 6.99002 7.36634 7.45129 7.64534 7.74361 7.82888 8.02221 8.38217 9.00733 9.57934 11.08156 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.039969 B = 0.006104 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.377643 B = 4586.143431 C = 4657.741975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.517 5.517 3 C 0.055 3.945 4 C 0.029 3.971 5 C -0.524 4.524 6 H 0.053 0.947 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.079 3.921 14 C 0.054 3.946 15 O -0.559 6.559 16 C -0.138 4.138 17 C 0.053 3.947 18 O -0.370 6.370 19 C 0.068 3.932 20 H 0.021 0.979 21 H 0.083 0.917 22 H 0.061 0.939 23 H 0.022 0.978 24 H 0.064 0.936 25 H 0.025 0.975 26 H 0.018 0.982 27 H 0.261 0.739 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.372 0.628 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.001 -10.092 10.292 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.242 5.242 3 C -0.071 4.071 4 C -0.008 4.008 5 C -0.563 4.563 6 H 0.071 0.929 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C -0.012 4.012 14 C -0.025 4.025 15 O -0.362 6.362 16 C -0.176 4.176 17 C -0.024 4.024 18 O -0.288 6.288 19 C -0.009 4.009 20 H 0.039 0.961 21 H 0.102 0.898 22 H 0.080 0.920 23 H 0.041 0.959 24 H 0.082 0.918 25 H 0.044 0.956 26 H 0.036 0.964 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.484 -10.705 9.325 14.205 hybrid contribution -0.480 1.976 0.978 2.256 sum -0.964 -8.729 10.303 13.538 Atomic orbital electron populations 1.22507 0.87801 1.01430 1.01274 1.62582 1.07940 1.16317 1.37368 1.22467 0.98861 0.85023 1.00760 1.19095 0.96952 0.94069 0.90722 1.21136 1.35397 0.97783 1.02009 0.92860 1.24982 0.95221 0.98470 0.95520 1.69955 1.40661 1.36559 1.05995 0.86657 0.79499 0.84619 0.77217 1.20178 1.21234 1.20316 1.22424 0.96328 0.94368 0.88087 1.22807 0.97543 0.94300 0.87894 1.86576 1.80220 1.53129 1.16256 1.22952 0.98634 0.93295 1.02678 1.23265 0.86801 0.94266 0.98103 1.89095 1.49718 1.17859 1.72102 1.23339 0.92558 0.85094 0.99953 0.96063 0.89821 0.92036 0.95929 0.91795 0.95618 0.96381 0.92885 0.93199 0.93586 0.78281 0.90628 0.89810 0.92453 0.89826 0.89632 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.77 60.07 0.53 0.81 16 2 N -0.52 -9.10 4.51 -225.35 -1.02 -10.12 16 3 C 0.06 1.13 4.11 -3.82 -0.02 1.11 16 4 C 0.03 0.73 4.90 -27.88 -0.14 0.60 16 5 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 6 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.08 1.22 0.46 -130.04 -0.06 1.16 16 14 C 0.05 0.77 5.12 37.16 0.19 0.96 16 15 O -0.56 -7.34 12.42 -35.23 -0.44 -7.77 16 16 C -0.14 -1.88 5.60 -25.16 -0.14 -2.02 16 17 C 0.05 0.71 7.63 37.93 0.29 1.00 16 18 O -0.37 -6.07 11.49 -35.23 -0.40 -6.48 16 19 C 0.07 1.10 5.18 37.93 0.20 1.30 16 20 H 0.02 0.32 6.42 -51.93 -0.33 -0.01 16 21 H 0.08 1.50 6.30 -51.93 -0.33 1.17 16 22 H 0.06 0.85 6.36 -51.93 -0.33 0.52 16 23 H 0.02 0.45 7.01 -51.93 -0.36 0.09 16 24 H 0.06 1.30 6.77 -51.93 -0.35 0.95 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.02 0.48 6.47 -51.93 -0.34 0.14 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.05 0.73 6.88 -51.92 -0.36 0.38 16 29 H 0.05 0.62 6.47 -51.93 -0.34 0.28 16 30 H 0.37 3.16 9.12 45.56 0.42 3.57 16 31 H 0.08 0.99 7.36 -51.93 -0.38 0.61 16 32 H 0.08 1.10 6.47 -51.93 -0.34 0.77 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.37 7.87 -51.93 -0.41 0.96 16 36 H 0.07 1.23 7.89 -51.93 -0.41 0.82 16 LS Contribution 280.80 15.07 4.23 4.23 Total: -1.00 -31.07 280.80 -6.14 -37.21 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.67 Total: 0.73 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 0.44 Total: -8.41 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.28 Total: -35.94 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.84 Total: -14.25 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.07 -6.14 -37.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611717298.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.091 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds