Wall clock time and date at job start Sun Mar 29 2020 21:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46910 * 1 3 3 C 1.46898 * 110.99907 * 2 1 4 4 C 1.53001 * 109.47206 * 293.95648 * 3 2 1 5 5 C 1.50700 * 109.47195 * 180.02562 * 4 3 2 6 6 H 1.08004 * 120.00000 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00105 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00117 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46857 * 60.00076 * 9 7 5 11 11 H 1.48493 * 109.47103 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47082 * 300.00055 * 9 7 5 13 13 C 1.46893 * 111.00020 * 123.95429 * 2 1 3 14 14 C 1.52996 * 110.56709 * 297.27265 * 13 2 1 15 15 O 1.42895 * 109.47469 * 178.02271 * 14 13 2 16 16 C 1.54512 * 110.51083 * 59.94860 * 13 2 1 17 17 C 1.54474 * 104.06131 * 118.64555 * 16 13 2 18 18 O 1.44427 * 104.80458 * 23.97905 * 17 16 13 19 19 C 1.44426 * 105.27356 * 319.48632 * 18 17 16 20 20 H 1.08996 * 109.46580 * 296.04704 * 1 2 3 21 21 H 1.09000 * 109.46812 * 56.04774 * 1 2 3 22 22 H 1.08996 * 109.46891 * 176.04518 * 1 2 3 23 23 H 1.08999 * 109.47246 * 53.95594 * 3 2 1 24 24 H 1.09000 * 109.46959 * 173.95494 * 3 2 1 25 25 H 1.08999 * 109.46974 * 300.00113 * 4 3 2 26 26 H 1.09000 * 109.47287 * 60.00047 * 4 3 2 27 27 H 0.96997 * 120.00240 * 180.02562 * 8 7 5 28 28 H 1.09009 * 109.47379 * 298.02254 * 14 13 2 29 29 H 1.09007 * 109.47385 * 58.01857 * 14 13 2 30 30 H 0.96703 * 114.00184 * 179.97438 * 15 14 13 31 31 H 1.08999 * 110.51561 * 237.28815 * 16 13 2 32 32 H 1.08992 * 110.51285 * 0.02562 * 16 13 2 33 33 H 1.09006 * 110.37557 * 265.14427 * 17 16 13 34 34 H 1.09004 * 110.37781 * 142.81270 * 17 16 13 35 35 H 1.08996 * 110.36828 * 159.34352 * 19 18 17 36 36 H 1.08996 * 110.37297 * 281.57053 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.1720 3.4642 -1.3185 6 1 2.7201 3.8322 -0.4637 7 6 1.9670 4.2813 -2.4099 8 7 1.3001 3.8330 -3.4510 9 14 2.6365 6.0253 -2.4100 10 1 4.1136 5.9884 -2.2619 11 1 2.2833 6.6910 -3.6894 12 1 2.0443 6.7829 -1.2783 13 6 1.9955 -0.7660 1.1375 14 6 1.5754 -0.1215 2.4600 15 8 2.0601 -0.9094 3.5491 16 6 1.5130 -2.2323 1.0726 17 6 2.8172 -3.0518 0.9558 18 8 3.8383 -2.2035 1.5248 19 6 3.5342 -0.8730 1.0523 20 1 -0.3632 0.4513 0.9233 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0252 -0.0709 23 1 1.5612 1.9273 0.8309 24 1 3.0798 1.3444 0.1082 25 1 2.0658 1.5016 -2.1492 26 1 0.5472 2.0845 -1.4265 27 1 1.1562 4.4077 -4.2190 28 1 1.9938 0.8831 2.5238 29 1 0.4878 -0.0657 2.5077 30 1 1.8305 -0.5591 4.4207 31 1 0.9751 -2.4982 1.9826 32 1 0.8842 -2.3890 0.1962 33 1 3.0396 -3.2643 -0.0899 34 1 2.7349 -3.9791 1.5229 35 1 4.0026 -0.1264 1.6936 36 1 3.8683 -0.7506 0.0221 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611717298.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:57 Heat of formation + Delta-G solvation = -113.084819 kcal Electronic energy + Delta-G solvation = -16985.276049 eV Core-core repulsion = 14275.658543 eV Total energy + Delta-G solvation = -2709.617505 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.26896 -38.12940 -37.19486 -35.19812 -32.77219 -30.79705 -30.42591 -27.53423 -26.67340 -25.39468 -23.62691 -22.08264 -20.03572 -18.90143 -18.29914 -17.23740 -17.10326 -16.50445 -16.45360 -16.01201 -15.42798 -15.32208 -14.81955 -14.49863 -14.06413 -13.64830 -13.53500 -13.26645 -13.00719 -12.82042 -12.65008 -12.35729 -12.18360 -12.00934 -11.81498 -11.74270 -11.32245 -11.23500 -10.93885 -10.59111 -10.52946 -9.25863 -8.19978 -6.31064 1.40509 1.43136 1.51026 2.39477 2.74839 3.13754 3.18657 3.29080 3.50742 3.92741 4.01262 4.24636 4.26123 4.28215 4.33063 4.50360 4.53016 4.61155 4.70314 4.77576 4.84717 4.88051 4.93754 5.03771 5.09252 5.15439 5.45592 5.63614 5.74881 5.83717 6.05407 6.23682 6.30021 6.85721 6.85886 7.38044 8.91809 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.039969 B = 0.006104 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.377643 B = 4586.143431 C = 4657.741975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.528 5.528 3 C 0.074 3.926 4 C 0.037 3.963 5 C -0.546 4.546 6 H 0.059 0.941 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.963 3.037 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.075 3.925 14 C 0.062 3.938 15 O -0.568 6.568 16 C -0.131 4.131 17 C 0.047 3.953 18 O -0.385 6.385 19 C 0.068 3.932 20 H 0.033 0.967 21 H 0.057 0.943 22 H 0.088 0.912 23 H 0.027 0.973 24 H 0.062 0.938 25 H -0.008 1.008 26 H -0.001 1.001 27 H 0.264 0.736 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.393 0.607 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.051 -10.260 11.744 15.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.253 5.253 3 C -0.053 4.053 4 C 0.000 4.000 5 C -0.584 4.584 6 H 0.078 0.922 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.788 3.212 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.191 1.191 13 C -0.015 4.015 14 C -0.018 4.018 15 O -0.374 6.374 16 C -0.168 4.168 17 C -0.029 4.029 18 O -0.303 6.303 19 C -0.010 4.010 20 H 0.051 0.949 21 H 0.076 0.924 22 H 0.106 0.894 23 H 0.045 0.955 24 H 0.080 0.920 25 H 0.010 0.990 26 H 0.018 0.982 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.242 0.758 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.539 -10.885 10.810 15.350 hybrid contribution -0.470 1.942 0.545 2.071 sum -1.009 -8.943 11.355 14.489 Atomic orbital electron populations 1.22500 0.86755 1.02791 1.00701 1.62443 1.08942 1.14558 1.39332 1.22058 0.98801 0.86556 0.97858 1.18916 0.95297 0.93529 0.92291 1.21593 1.35448 0.99030 1.02352 0.92238 1.25917 0.95390 1.03082 0.95055 1.70091 1.41933 1.38298 1.06723 0.85533 0.79077 0.79087 0.77549 1.19282 1.20854 1.19129 1.22469 0.95697 0.95263 0.88077 1.22606 0.97977 0.93608 0.87590 1.86520 1.80384 1.53210 1.17306 1.22933 0.98776 0.91651 1.03490 1.23478 0.86020 0.94696 0.98725 1.89076 1.50859 1.18020 1.72377 1.23268 0.93307 0.85401 0.98988 0.94852 0.92424 0.89374 0.95488 0.91995 0.98952 0.98242 0.92752 0.94105 0.92509 0.75820 0.89453 0.89268 0.92140 0.87504 0.89814 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 8.77 127.69 1.12 1.74 16 2 N -0.53 -18.29 4.51 -866.88 -3.91 -22.20 16 3 C 0.07 3.06 4.11 86.30 0.35 3.41 16 4 C 0.04 1.94 4.90 29.85 0.15 2.09 16 5 C -0.55 -30.78 9.11 25.60 0.23 -30.54 16 6 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 7 C 0.00 0.22 5.46 84.65 0.46 0.68 16 8 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 9 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 C 0.08 2.22 0.46 4.54 0.00 2.22 16 14 C 0.06 1.62 5.12 71.98 0.37 1.99 16 15 O -0.57 -13.38 12.42 -148.98 -1.85 -15.23 16 16 C -0.13 -3.24 5.60 31.61 0.18 -3.06 16 17 C 0.05 1.18 7.63 72.48 0.55 1.73 16 18 O -0.38 -12.09 11.49 -148.98 -1.71 -13.80 16 19 C 0.07 2.15 5.18 72.48 0.38 2.53 16 20 H 0.03 0.95 6.42 -2.39 -0.02 0.93 16 21 H 0.06 2.09 6.30 -2.39 -0.02 2.07 16 22 H 0.09 2.24 6.36 -2.39 -0.02 2.23 16 23 H 0.03 1.08 7.01 -2.39 -0.02 1.06 16 24 H 0.06 2.54 6.77 -2.39 -0.02 2.53 16 25 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 26 H 0.00 -0.04 6.47 -2.39 -0.02 -0.05 16 27 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.04 1.13 6.88 -2.38 -0.02 1.12 16 29 H 0.06 1.36 6.47 -2.38 -0.02 1.34 16 30 H 0.39 5.53 9.12 -74.06 -0.68 4.86 16 31 H 0.09 1.98 7.36 -2.39 -0.02 1.97 16 32 H 0.09 2.11 6.47 -2.39 -0.02 2.10 16 33 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.08 2.64 7.87 -2.39 -0.02 2.62 16 36 H 0.06 1.94 7.89 -2.39 -0.02 1.92 16 Total: -1.00 -66.33 280.80 -0.97 -67.30 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.40 Total: 11.33 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 3.79 Total: -17.22 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -3.62 Total: -78.29 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -3.56 Total: -29.04 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -66.33 -0.97 -67.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611717298.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.784 kcal (2) G-P(sol) polarization free energy of solvation -66.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds