Wall clock time and date at job start Sun Mar 29 2020 21:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36937 * 120.00310 * 2 1 4 4 H 1.07995 * 119.99866 * 202.70700 * 3 2 1 5 5 C 1.38809 * 119.99688 * 22.70101 * 3 2 1 6 6 N 1.31621 * 120.00403 * 11.50929 * 5 3 2 7 7 Si 1.86805 * 119.99934 * 191.51097 * 5 3 2 8 8 H 1.48500 * 109.46972 * 60.00117 * 7 5 3 9 9 H 1.48496 * 109.46986 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47000 * 300.00083 * 7 5 3 11 11 C 1.46501 * 119.99897 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.47468 * 270.00039 * 11 2 1 13 13 O 1.42899 * 109.46763 * 64.99773 * 12 11 2 14 14 C 1.42898 * 113.99878 * 180.02562 * 13 12 11 15 15 H 1.08997 * 109.48309 * 54.98079 * 14 13 12 16 16 C 1.53099 * 109.48068 * 175.00501 * 14 13 12 17 17 C 1.53174 * 109.16113 * 177.59336 * 16 14 13 18 18 C 1.53182 * 109.03574 * 303.01380 * 17 16 14 19 19 C 1.53094 * 109.16166 * 56.98361 * 18 17 16 20 20 O 1.42899 * 109.41446 * 302.39019 * 19 18 17 21 21 H 1.08997 * 109.46936 * 273.91852 * 1 2 3 22 22 H 1.08997 * 109.47038 * 33.92528 * 1 2 3 23 23 H 1.09000 * 109.47191 * 153.92067 * 1 2 3 24 24 H 0.96994 * 120.00310 * 179.97438 * 6 5 3 25 25 H 1.09004 * 109.47361 * 150.00087 * 11 2 1 26 26 H 1.08997 * 109.47434 * 29.99861 * 11 2 1 27 27 H 1.08994 * 109.46806 * 305.00533 * 12 11 2 28 28 H 1.08996 * 109.47500 * 185.00134 * 12 11 2 29 29 H 1.09004 * 109.52002 * 297.49166 * 16 14 13 30 30 H 1.08991 * 109.52478 * 57.62223 * 16 14 13 31 31 H 1.09000 * 109.54721 * 62.88520 * 17 16 14 32 32 H 1.09007 * 109.54159 * 183.15102 * 17 16 14 33 33 H 1.09003 * 109.52268 * 176.88734 * 18 17 16 34 34 H 1.08997 * 109.52479 * 297.01360 * 18 17 16 35 35 H 1.09007 * 109.47862 * 62.37447 * 19 18 17 36 36 H 1.09002 * 109.47765 * 182.39189 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1669 1.2220 -0.3610 5 6 1.5364 2.3414 0.4639 6 7 0.3917 2.2654 1.1092 7 14 2.3354 4.0046 0.1724 8 1 2.4787 4.2358 -1.2875 9 1 1.4873 5.0714 0.7622 10 1 3.6758 4.0286 0.8113 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7099 1.4433 13 8 1.2060 -1.9927 2.0823 14 6 1.3323 -2.4150 3.4415 15 1 1.8990 -1.6716 4.0020 16 6 -0.0598 -2.5686 4.0599 17 6 0.0821 -3.0790 5.4972 18 6 0.8612 -4.3978 5.4844 19 6 2.2176 -4.1736 4.8110 20 8 2.0143 -3.6699 3.4893 21 1 -0.3633 0.0702 1.0252 22 1 -0.3633 0.8527 -0.5735 23 1 -0.3633 -0.9230 -0.4518 24 1 -0.0367 3.0728 1.4337 25 1 3.1499 -1.1387 -0.5133 26 1 1.6084 -2.0286 -0.5129 27 1 2.9642 -0.9123 1.9819 28 1 3.0732 -2.6058 1.4450 29 1 -0.5648 -1.6026 4.0646 30 1 -0.6415 -3.2810 3.4752 31 1 0.6207 -2.3430 6.0940 32 1 -0.9070 -3.2439 5.9248 33 1 1.0147 -4.7400 6.5079 34 1 0.2978 -5.1483 4.9300 35 1 2.7961 -3.4532 5.3896 36 1 2.7591 -5.1183 4.7610 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612432797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:11 Heat of formation + Delta-G solvation = -79.471079 kcal Electronic energy + Delta-G solvation = -16838.433431 eV Core-core repulsion = 14130.273527 eV Total energy + Delta-G solvation = -2708.159904 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.34671 -36.73735 -34.95484 -33.57036 -31.46133 -30.14713 -28.01967 -25.66661 -24.60660 -23.12540 -22.71721 -20.45840 -19.96198 -17.08605 -16.51279 -16.32926 -15.45312 -14.75697 -14.63220 -14.22128 -13.98733 -13.45012 -13.32629 -12.68040 -12.50862 -12.43382 -12.03998 -11.25367 -11.15934 -11.05524 -10.92448 -10.78752 -10.66562 -10.53201 -10.38008 -10.01362 -9.88493 -9.74035 -9.29928 -9.04307 -8.43481 -6.60968 -5.60538 -3.06276 3.43559 3.48671 3.49840 3.73083 4.36399 4.58592 4.79412 4.85503 4.97744 5.20318 5.27284 5.46112 5.51723 5.61294 5.69727 5.72232 5.82310 5.93854 5.97811 6.17722 6.21873 6.30150 6.37163 6.40762 6.64593 6.86961 7.02920 7.39577 7.57053 7.87061 7.90486 8.02419 8.51755 9.36201 10.00130 10.51209 11.43807 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.037700 B = 0.006405 C = 0.006139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.524764 B = 4370.252979 C = 4559.829578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.598 5.598 3 C -0.255 4.255 4 H 0.066 0.934 5 C 0.001 3.999 6 N -0.905 5.905 7 Si 0.903 3.097 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.285 1.285 11 C 0.152 3.848 12 C 0.044 3.956 13 O -0.344 6.344 14 C 0.255 3.745 15 H 0.046 0.954 16 C -0.139 4.139 17 C -0.120 4.120 18 C -0.158 4.158 19 C 0.072 3.928 20 O -0.409 6.409 21 H 0.031 0.969 22 H 0.038 0.962 23 H -0.006 1.006 24 H 0.251 0.749 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.036 0.964 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.208 -11.631 8.069 14.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.320 5.320 3 C -0.385 4.385 4 H 0.084 0.916 5 C -0.197 4.197 6 N -0.550 5.550 7 Si 0.733 3.267 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.024 3.976 12 C -0.035 4.035 13 O -0.263 6.263 14 C 0.159 3.841 15 H 0.064 0.936 16 C -0.176 4.176 17 C -0.157 4.157 18 C -0.196 4.196 19 C -0.005 4.005 20 O -0.331 6.331 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.013 0.987 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.955 -11.537 7.847 13.986 hybrid contribution 0.579 1.103 0.454 1.326 sum 1.534 -10.434 8.302 13.421 Atomic orbital electron populations 1.20704 0.82233 0.94916 0.99301 1.43906 1.02154 1.00271 1.85686 1.19183 0.98134 0.85683 1.35452 0.91606 1.25026 0.97821 0.98349 0.98540 1.70087 1.18133 1.26878 1.39924 0.86371 0.78418 0.84078 0.77842 1.21131 1.21714 1.21122 1.20927 0.96472 0.88791 0.91433 1.23476 0.85090 0.97215 0.97766 1.88125 1.30517 1.84285 1.23379 1.22882 0.92025 0.83217 0.85928 0.93632 1.21966 0.96986 1.03369 0.95325 1.21586 1.00846 0.96758 0.96535 1.22235 0.97666 0.98516 1.01155 1.22414 0.95794 0.98946 0.83312 1.87810 1.78259 1.39354 1.27660 0.95042 0.94371 0.98718 0.93913 0.92261 0.93683 0.93562 0.94603 0.89763 0.90489 0.91739 0.91061 0.90998 0.90951 0.93437 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.60 8.61 59.85 0.52 5.12 16 2 N -0.60 -15.94 2.89 -181.12 -0.52 -16.47 16 3 C -0.25 -7.24 9.67 -15.06 -0.15 -7.39 16 4 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 5 C 0.00 0.02 5.12 -17.43 -0.09 -0.07 16 6 N -0.91 -27.18 10.62 55.49 0.59 -26.60 16 7 Si 0.90 22.33 29.57 -169.99 -5.03 17.30 16 8 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 9 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 C 0.15 3.37 6.11 -4.04 -0.02 3.35 16 12 C 0.04 0.93 6.15 37.16 0.23 1.15 16 13 O -0.34 -7.53 9.83 -59.04 -0.58 -8.11 16 14 C 0.26 4.61 3.20 37.21 0.12 4.72 16 15 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 16 C -0.14 -2.13 5.79 -26.59 -0.15 -2.28 16 17 C -0.12 -1.39 6.03 -26.55 -0.16 -1.55 16 18 C -0.16 -1.65 6.14 -26.59 -0.16 -1.82 16 19 C 0.07 0.87 6.84 37.21 0.25 1.12 16 20 O -0.41 -6.83 10.03 -59.04 -0.59 -7.43 16 21 H 0.03 0.90 7.43 -51.93 -0.39 0.51 16 22 H 0.04 1.07 7.20 -51.93 -0.37 0.69 16 23 H -0.01 -0.14 7.85 -51.93 -0.41 -0.55 16 24 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.06 1.22 8.03 -51.93 -0.42 0.81 16 26 H 0.04 0.95 7.87 -51.93 -0.41 0.54 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.68 7.75 -51.93 -0.40 0.28 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 291.59 15.07 4.39 4.39 Total: -1.00 -31.80 291.59 -7.53 -39.33 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -6.17 Total: -4.80 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 0.38 Total: 2.36 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.07 Total: -43.06 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -1.17 Total: -15.53 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.80 -7.53 -39.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612432797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.140 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds