Wall clock time and date at job start Sun Mar 29 2020 21:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36937 * 120.00310 * 2 1 4 4 H 1.07995 * 119.99866 * 202.70700 * 3 2 1 5 5 C 1.38809 * 119.99688 * 22.70101 * 3 2 1 6 6 N 1.31621 * 120.00403 * 11.50929 * 5 3 2 7 7 Si 1.86805 * 119.99934 * 191.51097 * 5 3 2 8 8 H 1.48500 * 109.46972 * 60.00117 * 7 5 3 9 9 H 1.48496 * 109.46986 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47000 * 300.00083 * 7 5 3 11 11 C 1.46501 * 119.99897 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.47468 * 270.00039 * 11 2 1 13 13 O 1.42899 * 109.46763 * 64.99773 * 12 11 2 14 14 C 1.42898 * 113.99878 * 180.02562 * 13 12 11 15 15 H 1.08997 * 109.48309 * 54.98079 * 14 13 12 16 16 C 1.53099 * 109.48068 * 175.00501 * 14 13 12 17 17 C 1.53174 * 109.16113 * 177.59336 * 16 14 13 18 18 C 1.53182 * 109.03574 * 303.01380 * 17 16 14 19 19 C 1.53094 * 109.16166 * 56.98361 * 18 17 16 20 20 O 1.42899 * 109.41446 * 302.39019 * 19 18 17 21 21 H 1.08997 * 109.46936 * 273.91852 * 1 2 3 22 22 H 1.08997 * 109.47038 * 33.92528 * 1 2 3 23 23 H 1.09000 * 109.47191 * 153.92067 * 1 2 3 24 24 H 0.96994 * 120.00310 * 179.97438 * 6 5 3 25 25 H 1.09004 * 109.47361 * 150.00087 * 11 2 1 26 26 H 1.08997 * 109.47434 * 29.99861 * 11 2 1 27 27 H 1.08994 * 109.46806 * 305.00533 * 12 11 2 28 28 H 1.08996 * 109.47500 * 185.00134 * 12 11 2 29 29 H 1.09004 * 109.52002 * 297.49166 * 16 14 13 30 30 H 1.08991 * 109.52478 * 57.62223 * 16 14 13 31 31 H 1.09000 * 109.54721 * 62.88520 * 17 16 14 32 32 H 1.09007 * 109.54159 * 183.15102 * 17 16 14 33 33 H 1.09003 * 109.52268 * 176.88734 * 18 17 16 34 34 H 1.08997 * 109.52479 * 297.01360 * 18 17 16 35 35 H 1.09007 * 109.47862 * 62.37447 * 19 18 17 36 36 H 1.09002 * 109.47765 * 182.39189 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1669 1.2220 -0.3610 5 6 1.5364 2.3414 0.4639 6 7 0.3917 2.2654 1.1092 7 14 2.3354 4.0046 0.1724 8 1 2.4787 4.2358 -1.2875 9 1 1.4873 5.0714 0.7622 10 1 3.6758 4.0286 0.8113 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7099 1.4433 13 8 1.2060 -1.9927 2.0823 14 6 1.3323 -2.4150 3.4415 15 1 1.8990 -1.6716 4.0020 16 6 -0.0598 -2.5686 4.0599 17 6 0.0821 -3.0790 5.4972 18 6 0.8612 -4.3978 5.4844 19 6 2.2176 -4.1736 4.8110 20 8 2.0143 -3.6699 3.4893 21 1 -0.3633 0.0702 1.0252 22 1 -0.3633 0.8527 -0.5735 23 1 -0.3633 -0.9230 -0.4518 24 1 -0.0367 3.0728 1.4337 25 1 3.1499 -1.1387 -0.5133 26 1 1.6084 -2.0286 -0.5129 27 1 2.9642 -0.9123 1.9819 28 1 3.0732 -2.6058 1.4450 29 1 -0.5648 -1.6026 4.0646 30 1 -0.6415 -3.2810 3.4752 31 1 0.6207 -2.3430 6.0940 32 1 -0.9070 -3.2439 5.9248 33 1 1.0147 -4.7400 6.5079 34 1 0.2978 -5.1483 4.9300 35 1 2.7961 -3.4532 5.3896 36 1 2.7591 -5.1183 4.7610 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612432797.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:11 Heat of formation + Delta-G solvation = -99.484804 kcal Electronic energy + Delta-G solvation = -16839.301292 eV Core-core repulsion = 14130.273527 eV Total energy + Delta-G solvation = -2709.027765 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.59911 -38.36651 -36.85608 -34.66400 -33.46134 -31.47777 -29.78888 -27.83675 -25.80249 -24.73600 -24.15818 -22.22551 -21.19356 -18.85948 -18.21477 -17.68812 -16.99039 -16.52168 -15.93165 -15.66666 -15.43500 -15.13876 -14.86661 -14.25983 -13.93458 -13.81525 -13.68029 -13.02102 -12.76300 -12.74828 -12.51809 -12.30365 -12.18666 -12.05015 -11.91369 -11.86643 -11.74990 -11.44344 -10.68422 -10.60164 -10.46390 -8.75250 -7.78255 -5.27175 1.46777 1.49947 1.56380 2.43543 2.54051 3.04893 3.34240 3.74353 3.78503 3.86090 4.00553 4.01761 4.11026 4.44344 4.45777 4.55003 4.61606 4.64691 4.79827 4.85600 4.88817 4.93407 5.01665 5.06362 5.11080 5.12214 5.32488 5.36446 5.65657 5.80579 6.15576 6.34850 6.39778 7.18271 7.90109 8.37052 9.25222 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.037700 B = 0.006405 C = 0.006139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.524764 B = 4370.252979 C = 4559.829578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.613 5.613 3 C -0.266 4.266 4 H 0.074 0.926 5 C -0.056 4.056 6 N -0.937 5.937 7 Si 0.971 3.029 8 H -0.277 1.277 9 H -0.295 1.295 10 H -0.276 1.276 11 C 0.147 3.853 12 C 0.055 3.945 13 O -0.374 6.374 14 C 0.254 3.746 15 H 0.035 0.965 16 C -0.136 4.136 17 C -0.116 4.116 18 C -0.151 4.151 19 C 0.059 3.941 20 O -0.427 6.427 21 H 0.002 0.998 22 H 0.014 0.986 23 H 0.018 0.982 24 H 0.246 0.754 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.022 0.978 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 -12.705 8.745 15.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.336 5.336 3 C -0.396 4.396 4 H 0.092 0.908 5 C -0.250 4.250 6 N -0.584 5.584 7 Si 0.799 3.201 8 H -0.203 1.203 9 H -0.221 1.221 10 H -0.201 1.201 11 C 0.021 3.979 12 C -0.024 4.024 13 O -0.293 6.293 14 C 0.158 3.842 15 H 0.052 0.948 16 C -0.174 4.174 17 C -0.153 4.153 18 C -0.189 4.189 19 C -0.016 4.016 20 O -0.349 6.349 21 H 0.021 0.979 22 H 0.032 0.968 23 H 0.037 0.963 24 H 0.055 0.945 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.040 0.960 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.881 -12.649 8.526 15.370 hybrid contribution 0.330 1.324 0.270 1.391 sum 2.211 -11.325 8.796 14.509 Atomic orbital electron populations 1.20386 0.82771 0.94931 0.97281 1.44124 1.02207 1.01458 1.85854 1.19571 0.98515 0.86645 1.34915 0.90835 1.25851 0.98558 1.01970 0.98671 1.70277 1.19612 1.27364 1.41143 0.85288 0.77571 0.79336 0.77891 1.20298 1.22141 1.20135 1.21126 0.97043 0.87315 0.92428 1.23223 0.85234 0.97318 0.96585 1.88077 1.30957 1.84837 1.25460 1.22939 0.93529 0.83731 0.83995 0.94792 1.21977 0.95149 1.02494 0.97767 1.21614 1.02452 0.97509 0.93723 1.22214 0.96248 0.97594 1.02826 1.22810 0.97301 0.99945 0.81572 1.87767 1.78223 1.38283 1.30628 0.97922 0.96766 0.96305 0.94471 0.90569 0.92276 0.95996 0.92229 0.91641 0.90906 0.91346 0.89039 0.87775 0.90981 0.92779 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.36 8.61 127.77 1.10 11.46 16 2 N -0.61 -32.83 2.89 -726.94 -2.10 -34.93 16 3 C -0.27 -15.16 9.67 84.03 0.81 -14.34 16 4 H 0.07 3.99 7.85 -2.91 -0.02 3.96 16 5 C -0.06 -3.22 5.12 84.86 0.43 -2.79 16 6 N -0.94 -57.58 10.62 21.65 0.23 -57.35 16 7 Si 0.97 46.12 29.57 68.60 2.03 48.15 16 8 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 9 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 C 0.15 6.42 6.11 86.38 0.53 6.95 16 12 C 0.06 2.33 6.15 71.98 0.44 2.77 16 13 O -0.37 -16.52 9.83 -126.21 -1.24 -17.76 16 14 C 0.25 9.19 3.20 72.02 0.23 9.42 16 15 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 16 C -0.14 -4.16 5.79 30.69 0.18 -3.98 16 17 C -0.12 -2.47 6.03 30.71 0.19 -2.28 16 18 C -0.15 -2.71 6.14 30.69 0.19 -2.52 16 19 C 0.06 1.29 6.84 72.01 0.49 1.78 16 20 O -0.43 -13.77 10.03 -126.21 -1.27 -15.04 16 21 H 0.00 0.15 7.43 -2.39 -0.02 0.13 16 22 H 0.01 0.79 7.20 -2.39 -0.02 0.78 16 23 H 0.02 0.89 7.85 -2.39 -0.02 0.88 16 24 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.08 3.03 8.03 -2.39 -0.02 3.01 16 26 H 0.06 2.40 7.87 -2.39 -0.02 2.38 16 27 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 2.21 7.75 -2.39 -0.02 2.19 16 29 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -68.54 291.59 3.27 -65.28 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 1.02 Total: 5.18 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 4.59 Total: 6.46 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -1.87 Total: -92.28 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -2.51 Total: -32.80 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -68.54 3.27 -65.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612432797.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.208 kcal (2) G-P(sol) polarization free energy of solvation -68.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds