Wall clock time and date at job start Sun Mar 29 2020 21:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36939 * 120.00116 * 2 1 4 4 H 1.07998 * 119.99530 * 202.70740 * 3 2 1 5 5 C 1.38809 * 120.00029 * 22.70798 * 3 2 1 6 6 N 1.31616 * 119.99916 * 11.50345 * 5 3 2 7 7 Si 1.86801 * 119.99881 * 191.50597 * 5 3 2 8 8 H 1.48501 * 109.47147 * 89.99947 * 7 5 3 9 9 H 1.48501 * 109.47129 * 209.99750 * 7 5 3 10 10 H 1.48493 * 109.47310 * 329.99807 * 7 5 3 11 11 C 1.46501 * 119.99804 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47284 * 270.00052 * 11 2 1 13 13 O 1.42902 * 109.47194 * 65.00118 * 12 11 2 14 14 C 1.42895 * 113.99756 * 180.02562 * 13 12 11 15 15 H 1.08998 * 109.48378 * 310.01568 * 14 13 12 16 16 C 1.53103 * 109.47790 * 189.99740 * 14 13 12 17 17 C 1.53176 * 109.16446 * 182.39628 * 16 14 13 18 18 C 1.53180 * 109.03587 * 56.98018 * 17 16 14 19 19 C 1.53094 * 109.16264 * 303.02138 * 18 17 16 20 20 O 1.42898 * 109.42558 * 57.60130 * 19 18 17 21 21 H 1.09002 * 109.47029 * 273.91808 * 1 2 3 22 22 H 1.08994 * 109.46896 * 33.92022 * 1 2 3 23 23 H 1.09001 * 109.47249 * 153.92340 * 1 2 3 24 24 H 0.97004 * 120.00285 * 179.97438 * 6 5 3 25 25 H 1.08998 * 109.46906 * 150.00213 * 11 2 1 26 26 H 1.08998 * 109.47139 * 29.99832 * 11 2 1 27 27 H 1.09002 * 109.46896 * 305.00287 * 12 11 2 28 28 H 1.08999 * 109.47111 * 185.00245 * 12 11 2 29 29 H 1.09007 * 109.51934 * 62.48882 * 16 14 13 30 30 H 1.08998 * 109.51902 * 302.30404 * 16 14 13 31 31 H 1.09001 * 109.54184 * 297.11337 * 17 16 14 32 32 H 1.08997 * 109.54413 * 176.85230 * 17 16 14 33 33 H 1.09002 * 109.52021 * 183.11347 * 18 17 16 34 34 H 1.08993 * 109.57428 * 62.95613 * 18 17 16 35 35 H 1.08996 * 109.47545 * 177.59468 * 19 18 17 36 36 H 1.09002 * 109.48064 * 297.61064 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1670 1.2220 -0.3611 5 6 1.5364 2.3415 0.4641 6 7 0.3919 2.2653 1.1093 7 14 2.3356 4.0046 0.1726 8 1 1.8562 4.5650 -1.1163 9 1 1.9748 4.9277 1.2785 10 1 3.8109 3.8431 0.1240 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7099 1.4433 13 8 1.2060 -1.9927 2.0823 14 6 1.3324 -2.4150 3.4416 15 1 2.0698 -3.2150 3.5066 16 6 -0.0202 -2.9253 3.9455 17 6 0.1088 -3.3198 5.4200 18 6 0.6086 -2.1119 6.2185 19 6 1.9369 -1.6331 5.6267 20 8 1.7540 -1.3120 4.2464 21 1 -0.3633 0.0702 1.0253 22 1 -0.3633 0.8527 -0.5735 23 1 -0.3634 -0.9231 -0.4517 24 1 -0.0366 3.0728 1.4340 25 1 3.1499 -1.1386 -0.5133 26 1 1.6084 -2.0286 -0.5129 27 1 2.9642 -0.9123 1.9820 28 1 3.0732 -2.6058 1.4450 29 1 -0.3224 -3.7943 3.3610 30 1 -0.7675 -2.1384 3.8430 31 1 0.8196 -4.1405 5.5170 32 1 -0.8639 -3.6314 5.8005 33 1 0.7561 -2.3993 7.2595 34 1 -0.1256 -1.3083 6.1629 35 1 2.2759 -0.7475 6.1642 36 1 2.6823 -2.4228 5.7206 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612432798.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:13 Heat of formation + Delta-G solvation = -76.894251 kcal Electronic energy + Delta-G solvation = -16989.385103 eV Core-core repulsion = 14281.336938 eV Total energy + Delta-G solvation = -2708.048165 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.25744 -36.71424 -34.91398 -33.48914 -31.40999 -30.09437 -27.98913 -25.60933 -24.55465 -23.07368 -22.69905 -20.40121 -19.94227 -17.03458 -16.38782 -16.30905 -15.42545 -14.79022 -14.54714 -14.10587 -13.96901 -13.39637 -13.26988 -12.57566 -12.45385 -12.31219 -12.11767 -11.26507 -11.14796 -10.99377 -10.83344 -10.74823 -10.65067 -10.48085 -10.27036 -9.97861 -9.82451 -9.71226 -9.17541 -9.04234 -8.36993 -6.54401 -5.53260 -2.99132 3.47850 3.53078 3.55041 3.84344 4.40609 4.64221 4.85143 4.89779 5.02687 5.20829 5.24632 5.45765 5.57502 5.65051 5.69617 5.75206 5.84946 5.95600 6.06666 6.13299 6.19768 6.30838 6.34627 6.43517 6.66017 6.93599 7.05838 7.52281 7.61567 7.92932 7.95235 8.09628 8.58109 9.42469 10.06257 10.57044 11.51088 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.030266 B = 0.007539 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.899739 B = 3713.173604 C = 4095.868122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.595 5.595 3 C -0.256 4.256 4 H 0.066 0.934 5 C 0.003 3.997 6 N -0.900 5.900 7 Si 0.902 3.098 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.152 3.848 12 C 0.041 3.959 13 O -0.346 6.346 14 C 0.256 3.744 15 H 0.038 0.962 16 C -0.141 4.141 17 C -0.117 4.117 18 C -0.159 4.159 19 C 0.071 3.929 20 O -0.391 6.391 21 H 0.033 0.967 22 H 0.037 0.963 23 H -0.008 1.008 24 H 0.249 0.751 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.023 0.977 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -11.599 8.067 14.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.317 5.317 3 C -0.386 4.386 4 H 0.084 0.916 5 C -0.196 4.196 6 N -0.545 5.545 7 Si 0.732 3.268 8 H -0.217 1.217 9 H -0.219 1.219 10 H -0.206 1.206 11 C 0.024 3.976 12 C -0.038 4.038 13 O -0.264 6.264 14 C 0.160 3.840 15 H 0.055 0.945 16 C -0.179 4.179 17 C -0.155 4.155 18 C -0.197 4.197 19 C -0.006 4.006 20 O -0.312 6.312 21 H 0.051 0.949 22 H 0.056 0.944 23 H 0.011 0.989 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.920 -11.253 7.931 13.798 hybrid contribution 0.620 0.702 0.359 1.003 sum 1.539 -10.551 8.290 13.506 Atomic orbital electron populations 1.20700 0.82253 0.94738 0.99385 1.43876 1.02119 1.00198 1.85537 1.19191 0.98153 0.85601 1.35610 0.91602 1.25030 0.97831 0.98315 0.98396 1.70108 1.18104 1.26637 1.39654 0.86298 0.78756 0.84546 0.77168 1.21651 1.21878 1.20642 1.20913 0.96432 0.88959 0.91272 1.23558 0.84953 0.97216 0.98067 1.88099 1.31021 1.87315 1.19991 1.22798 0.93970 0.86095 0.81179 0.94456 1.22000 0.98098 1.02237 0.95515 1.21566 1.01623 0.97577 0.94734 1.22242 0.99110 0.98949 0.99411 1.22424 0.95421 1.00576 0.82196 1.88024 1.87883 1.36808 1.18461 0.94912 0.94401 0.98898 0.94019 0.92311 0.93884 0.92415 0.95934 0.90574 0.89862 0.92043 0.91138 0.91071 0.90631 0.88969 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.71 8.61 59.85 0.52 5.23 16 2 N -0.59 -16.15 2.89 -181.12 -0.52 -16.68 16 3 C -0.26 -7.44 9.67 -15.06 -0.15 -7.58 16 4 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 5 C 0.00 0.08 5.12 -17.43 -0.09 -0.01 16 6 N -0.90 -27.88 10.62 55.49 0.59 -27.29 16 7 Si 0.90 22.87 29.57 -169.99 -5.03 17.85 16 8 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 9 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 C 0.15 3.39 6.11 -4.04 -0.02 3.36 16 12 C 0.04 0.87 6.15 37.16 0.23 1.10 16 13 O -0.35 -7.55 9.81 -59.04 -0.58 -8.13 16 14 C 0.26 4.61 3.16 37.21 0.12 4.73 16 15 H 0.04 0.60 8.09 -51.93 -0.42 0.18 16 16 C -0.14 -2.10 5.79 -26.59 -0.15 -2.25 16 17 C -0.12 -1.35 6.03 -26.55 -0.16 -1.51 16 18 C -0.16 -1.90 6.14 -26.59 -0.16 -2.06 16 19 C 0.07 1.00 6.84 37.21 0.25 1.25 16 20 O -0.39 -7.72 10.25 -59.04 -0.60 -8.33 16 21 H 0.03 0.97 7.43 -51.93 -0.39 0.59 16 22 H 0.04 1.08 7.20 -51.93 -0.37 0.70 16 23 H -0.01 -0.18 7.85 -51.93 -0.41 -0.59 16 24 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.06 1.21 8.03 -51.93 -0.42 0.79 16 26 H 0.04 0.88 7.87 -51.93 -0.41 0.47 16 27 H 0.06 1.38 7.89 -51.93 -0.41 0.97 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 291.86 15.07 4.40 4.40 Total: -1.00 -33.42 291.86 -7.54 -40.96 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -6.17 Total: -5.04 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 0.38 Total: 2.25 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.07 Total: -43.97 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -1.18 Total: -16.45 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.03 Total: 17.85 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.42 -7.54 -40.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612432798.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.931 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds