Wall clock time and date at job start Sun Mar 29 2020 21:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36939 * 120.00116 * 2 1 4 4 H 1.07998 * 119.99530 * 202.70740 * 3 2 1 5 5 C 1.38809 * 120.00029 * 22.70798 * 3 2 1 6 6 N 1.31616 * 119.99916 * 11.50345 * 5 3 2 7 7 Si 1.86801 * 119.99881 * 191.50597 * 5 3 2 8 8 H 1.48501 * 109.47147 * 89.99947 * 7 5 3 9 9 H 1.48501 * 109.47129 * 209.99750 * 7 5 3 10 10 H 1.48493 * 109.47310 * 329.99807 * 7 5 3 11 11 C 1.46501 * 119.99804 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47284 * 270.00052 * 11 2 1 13 13 O 1.42902 * 109.47194 * 65.00118 * 12 11 2 14 14 C 1.42895 * 113.99756 * 180.02562 * 13 12 11 15 15 H 1.08998 * 109.48378 * 310.01568 * 14 13 12 16 16 C 1.53103 * 109.47790 * 189.99740 * 14 13 12 17 17 C 1.53176 * 109.16446 * 182.39628 * 16 14 13 18 18 C 1.53180 * 109.03587 * 56.98018 * 17 16 14 19 19 C 1.53094 * 109.16264 * 303.02138 * 18 17 16 20 20 O 1.42898 * 109.42558 * 57.60130 * 19 18 17 21 21 H 1.09002 * 109.47029 * 273.91808 * 1 2 3 22 22 H 1.08994 * 109.46896 * 33.92022 * 1 2 3 23 23 H 1.09001 * 109.47249 * 153.92340 * 1 2 3 24 24 H 0.97004 * 120.00285 * 179.97438 * 6 5 3 25 25 H 1.08998 * 109.46906 * 150.00213 * 11 2 1 26 26 H 1.08998 * 109.47139 * 29.99832 * 11 2 1 27 27 H 1.09002 * 109.46896 * 305.00287 * 12 11 2 28 28 H 1.08999 * 109.47111 * 185.00245 * 12 11 2 29 29 H 1.09007 * 109.51934 * 62.48882 * 16 14 13 30 30 H 1.08998 * 109.51902 * 302.30404 * 16 14 13 31 31 H 1.09001 * 109.54184 * 297.11337 * 17 16 14 32 32 H 1.08997 * 109.54413 * 176.85230 * 17 16 14 33 33 H 1.09002 * 109.52021 * 183.11347 * 18 17 16 34 34 H 1.08993 * 109.57428 * 62.95613 * 18 17 16 35 35 H 1.08996 * 109.47545 * 177.59468 * 19 18 17 36 36 H 1.09002 * 109.48064 * 297.61064 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1670 1.2220 -0.3611 5 6 1.5364 2.3415 0.4641 6 7 0.3919 2.2653 1.1093 7 14 2.3356 4.0046 0.1726 8 1 1.8562 4.5650 -1.1163 9 1 1.9748 4.9277 1.2785 10 1 3.8109 3.8431 0.1240 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7099 1.4433 13 8 1.2060 -1.9927 2.0823 14 6 1.3324 -2.4150 3.4416 15 1 2.0698 -3.2150 3.5066 16 6 -0.0202 -2.9253 3.9455 17 6 0.1088 -3.3198 5.4200 18 6 0.6086 -2.1119 6.2185 19 6 1.9369 -1.6331 5.6267 20 8 1.7540 -1.3120 4.2464 21 1 -0.3633 0.0702 1.0253 22 1 -0.3633 0.8527 -0.5735 23 1 -0.3634 -0.9231 -0.4517 24 1 -0.0366 3.0728 1.4340 25 1 3.1499 -1.1386 -0.5133 26 1 1.6084 -2.0286 -0.5129 27 1 2.9642 -0.9123 1.9820 28 1 3.0732 -2.6058 1.4450 29 1 -0.3224 -3.7943 3.3610 30 1 -0.7675 -2.1384 3.8430 31 1 0.8196 -4.1405 5.5170 32 1 -0.8639 -3.6314 5.8005 33 1 0.7561 -2.3993 7.2595 34 1 -0.1256 -1.3083 6.1629 35 1 2.2759 -0.7475 6.1642 36 1 2.6823 -2.4228 5.7206 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612432798.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:13 Heat of formation + Delta-G solvation = -98.967669 kcal Electronic energy + Delta-G solvation = -16990.342278 eV Core-core repulsion = 14281.336938 eV Total energy + Delta-G solvation = -2709.005340 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.54923 -38.34634 -36.84199 -34.63974 -33.44520 -31.46274 -29.77108 -27.82949 -25.77703 -24.75246 -24.12212 -22.19513 -21.17523 -18.84583 -18.14567 -17.69088 -16.93698 -16.63156 -15.77267 -15.71351 -15.40869 -15.12564 -14.87871 -14.18274 -13.95973 -13.75919 -13.62645 -13.06591 -12.81161 -12.68576 -12.54562 -12.26541 -12.11538 -12.02721 -11.92877 -11.81115 -11.72890 -11.44472 -10.67057 -10.56686 -10.40779 -8.72742 -7.76662 -5.25288 1.45344 1.47737 1.56226 2.51299 2.55818 3.11895 3.35960 3.75544 3.78801 3.87248 3.99908 4.02890 4.11779 4.40341 4.50783 4.55832 4.57958 4.64267 4.78921 4.84980 4.90332 4.92985 5.03586 5.07698 5.12261 5.20097 5.34921 5.36461 5.66199 5.82734 6.20077 6.37076 6.52289 7.19642 7.92492 8.38477 9.26978 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.030266 B = 0.007539 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.899739 B = 3713.173604 C = 4095.868122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.194 3.806 2 N -0.613 5.613 3 C -0.264 4.264 4 H 0.074 0.926 5 C -0.058 4.058 6 N -0.936 5.936 7 Si 0.971 3.029 8 H -0.283 1.283 9 H -0.298 1.298 10 H -0.266 1.266 11 C 0.146 3.854 12 C 0.051 3.949 13 O -0.377 6.377 14 C 0.246 3.754 15 H 0.064 0.936 16 C -0.138 4.138 17 C -0.110 4.110 18 C -0.156 4.156 19 C 0.060 3.940 20 O -0.439 6.439 21 H -0.003 1.003 22 H 0.012 0.988 23 H 0.021 0.979 24 H 0.244 0.756 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.019 0.981 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 -13.249 8.573 15.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.336 5.336 3 C -0.395 4.395 4 H 0.092 0.908 5 C -0.253 4.253 6 N -0.583 5.583 7 Si 0.799 3.201 8 H -0.210 1.210 9 H -0.225 1.225 10 H -0.191 1.191 11 C 0.019 3.981 12 C -0.027 4.027 13 O -0.297 6.297 14 C 0.151 3.849 15 H 0.081 0.919 16 C -0.176 4.176 17 C -0.148 4.148 18 C -0.194 4.194 19 C -0.016 4.016 20 O -0.362 6.362 21 H 0.015 0.985 22 H 0.031 0.969 23 H 0.040 0.960 24 H 0.053 0.947 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.038 0.962 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.069 -12.940 8.435 15.585 hybrid contribution 0.302 1.126 0.227 1.188 sum 2.371 -11.814 8.662 14.840 Atomic orbital electron populations 1.20344 0.82880 0.94925 0.96961 1.44115 1.02161 1.01561 1.85715 1.19595 0.98471 0.86670 1.34725 0.90811 1.25881 0.98623 1.02107 0.98667 1.70314 1.19749 1.27076 1.41167 0.85213 0.78475 0.79703 0.76729 1.21012 1.22493 1.19108 1.21163 0.97048 0.87366 0.92492 1.23283 0.85223 0.97767 0.96462 1.88042 1.31536 1.87632 1.22470 1.23197 0.96229 0.86039 0.79428 0.91897 1.22039 0.95587 1.01563 0.98404 1.21589 1.03497 0.97843 0.91824 1.22229 0.97243 0.98544 1.01342 1.22742 0.97394 1.01681 0.79761 1.87952 1.88396 1.38578 1.21262 0.98497 0.96915 0.96020 0.94694 0.90623 0.91829 0.96228 0.91686 0.89027 0.93151 0.89602 0.89087 0.87592 0.92829 0.88892 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.75 8.61 127.77 1.10 11.85 16 2 N -0.61 -33.42 2.89 -726.93 -2.10 -35.52 16 3 C -0.26 -15.47 9.67 84.03 0.81 -14.65 16 4 H 0.07 4.11 7.85 -2.91 -0.02 4.08 16 5 C -0.06 -3.47 5.12 84.86 0.43 -3.04 16 6 N -0.94 -59.94 10.62 21.65 0.23 -59.71 16 7 Si 0.97 47.67 29.57 68.60 2.03 49.70 16 8 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 9 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 C 0.15 6.29 6.11 86.38 0.53 6.82 16 12 C 0.05 2.13 6.15 71.98 0.44 2.57 16 13 O -0.38 -16.46 9.81 -126.21 -1.24 -17.69 16 14 C 0.25 8.70 3.16 72.02 0.23 8.93 16 15 H 0.06 1.86 8.09 -2.39 -0.02 1.84 16 16 C -0.14 -3.99 5.79 30.69 0.18 -3.81 16 17 C -0.11 -2.22 6.03 30.71 0.19 -2.04 16 18 C -0.16 -3.42 6.14 30.69 0.19 -3.23 16 19 C 0.06 1.62 6.84 72.01 0.49 2.11 16 20 O -0.44 -17.55 10.25 -126.21 -1.29 -18.85 16 21 H 0.00 -0.21 7.43 -2.39 -0.02 -0.22 16 22 H 0.01 0.72 7.20 -2.39 -0.02 0.71 16 23 H 0.02 1.04 7.85 -2.39 -0.02 1.02 16 24 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 25 H 0.08 2.97 8.03 -2.39 -0.02 2.95 16 26 H 0.06 2.47 7.87 -2.39 -0.02 2.45 16 27 H 0.02 0.94 7.89 -2.39 -0.02 0.92 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -74.48 291.86 3.24 -71.24 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: 1.02 Total: 5.33 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 4.59 Total: 5.51 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -1.87 Total: -95.24 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -2.53 Total: -36.54 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -74.48 3.24 -71.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612432798.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.732 kcal (2) G-P(sol) polarization free energy of solvation -74.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds