Wall clock time and date at job start Sun Mar 29 2020 22:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30405 * 125.12910 * 2 1 4 4 C 1.34553 * 109.55051 * 180.26582 * 3 2 1 5 5 C 1.43201 * 126.40766 * 179.76574 * 4 3 2 6 6 N 4.66810 * 150.66841 * 359.55240 * 2 1 3 7 7 C 1.39140 * 107.18377 * 359.76332 * 4 3 2 8 8 C 1.43203 * 126.96634 * 179.97438 * 7 4 3 9 9 N 4.71032 * 152.54307 * 180.36666 * 2 1 3 10 10 N 1.34846 * 125.12924 * 179.86277 * 2 1 3 11 11 C 1.46496 * 126.27041 * 359.97438 * 10 2 1 12 12 C 1.52997 * 109.47294 * 269.71648 * 11 10 2 13 13 C 1.50706 * 109.47238 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99515 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00176 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00200 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00139 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47145 * 89.99836 * 17 15 13 19 19 H 1.48496 * 109.47547 * 210.00333 * 17 15 13 20 20 H 1.48499 * 109.47030 * 330.00237 * 17 15 13 21 21 H 1.09004 * 109.47178 * 270.14060 * 1 2 3 22 22 H 1.08993 * 109.47324 * 30.14184 * 1 2 3 23 23 H 1.09001 * 109.47105 * 150.14277 * 1 2 3 24 24 H 1.09001 * 109.47059 * 149.71937 * 11 10 2 25 25 H 1.09004 * 109.47074 * 29.71893 * 11 10 2 26 26 H 1.09001 * 109.46832 * 60.00150 * 12 11 10 27 27 H 1.09000 * 109.47611 * 300.00447 * 12 11 10 28 28 H 0.96999 * 120.00061 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2574 1.0665 0.0000 4 6 3.5535 0.7052 -0.0059 5 6 4.6817 1.5871 -0.0125 6 7 5.5766 2.2867 -0.0179 7 6 3.5925 -0.6857 -0.0043 8 6 4.7603 -1.5144 -0.0094 9 7 5.6867 -2.1718 -0.0139 10 7 2.2829 -1.1028 0.0026 11 6 1.8157 -2.4913 0.0065 12 6 1.6603 -2.9731 1.4503 13 6 1.1790 -4.4013 1.4542 14 1 1.0021 -4.9140 0.5203 15 6 0.9645 -5.0531 2.6500 16 7 0.5450 -6.2996 2.6534 17 14 1.2712 -4.1665 4.2653 18 1 0.0259 -3.4839 4.6995 19 1 1.6831 -5.1496 5.2993 20 1 2.3484 -3.1610 4.0813 21 1 -0.3634 0.0025 1.0277 22 1 -0.3633 0.8886 -0.5160 23 1 -0.3633 -0.8913 -0.5116 24 1 2.5407 -3.1201 -0.5103 25 1 0.8537 -2.5523 -0.5025 26 1 0.9352 -2.3443 1.9671 27 1 2.6222 -2.9121 1.9593 28 1 0.3944 -6.7583 3.4947 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614676539.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:43 Heat of formation + Delta-G solvation = 111.320331 kcal Electronic energy + Delta-G solvation = -14751.524175 eV Core-core repulsion = 12189.980272 eV Total energy + Delta-G solvation = -2561.543903 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.50986 -36.75657 -36.58954 -35.23157 -32.94947 -32.18698 -30.44137 -27.97916 -25.92628 -24.12242 -21.61705 -20.65674 -19.12926 -17.89589 -17.10239 -16.10818 -15.32540 -14.45733 -14.31881 -13.87909 -13.67762 -13.51650 -13.32582 -13.08968 -13.06511 -12.98166 -12.74840 -12.52002 -12.39381 -11.89421 -11.37746 -11.00054 -10.66135 -10.34371 -10.12086 -9.67653 -9.62072 -8.82499 -8.62101 -6.32766 -4.36765 0.72463 2.03180 2.17149 2.44734 2.78072 3.02394 3.12521 3.22586 3.24422 3.57316 3.59885 3.68936 4.20382 4.46177 4.74821 4.96210 5.06051 5.35862 5.44295 5.58829 5.75111 5.83312 5.95378 5.97052 6.59996 6.77894 6.86360 7.28622 7.35533 7.37574 7.56055 8.14486 8.66259 9.26233 10.79205 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.027385 B = 0.007429 C = 0.006778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.219543 B = 3768.170755 C = 4129.952040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.257 3.743 3 N -0.456 5.456 4 C 0.126 3.874 5 C 0.301 3.699 6 N -0.400 5.400 7 C 0.092 3.908 8 C 0.277 3.723 9 N -0.374 5.374 10 N -0.409 5.409 11 C 0.100 3.900 12 C -0.022 4.022 13 C -0.534 4.534 14 H 0.078 0.922 15 C 0.078 3.922 16 N -0.890 5.890 17 Si 0.875 3.125 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.266 1.266 21 H 0.093 0.907 22 H 0.096 0.904 23 H 0.088 0.912 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.027 0.973 27 H 0.024 0.976 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.805 10.704 -5.076 11.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.007 4.007 3 N -0.175 5.175 4 C -0.013 4.013 5 C -0.015 4.015 6 N -0.077 5.077 7 C -0.034 4.034 8 C -0.039 4.039 9 N -0.051 5.051 10 N -0.087 5.087 11 C -0.019 4.019 12 C -0.060 4.060 13 C -0.572 4.572 14 H 0.096 0.904 15 C -0.126 4.126 16 N -0.527 5.527 17 Si 0.702 3.298 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.190 1.190 21 H 0.112 0.888 22 H 0.115 0.885 23 H 0.106 0.894 24 H 0.113 0.887 25 H 0.126 0.874 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.507 11.203 -4.973 12.267 hybrid contribution -0.291 -0.650 1.015 1.240 sum 0.215 10.553 -3.958 11.272 Atomic orbital electron populations 1.20436 0.83126 1.04887 1.04973 1.23344 0.96247 0.79780 1.01371 1.70271 0.99028 1.28063 1.20130 1.15620 0.88829 0.85755 1.11080 1.23778 0.91673 0.92523 0.93561 1.81252 1.09926 1.07665 1.08878 1.16008 0.81757 0.90180 1.15421 1.23792 0.92346 0.93403 0.94409 1.81301 1.09825 1.05736 1.08282 1.45897 1.03576 1.10544 1.48638 1.22637 1.01777 0.74372 1.03157 1.19950 0.98092 0.98355 0.89635 1.20738 1.46782 0.94592 0.95111 0.90351 1.24917 0.93882 0.94651 0.99139 1.69870 1.44741 1.10663 1.27408 0.86845 0.79357 0.79987 0.83615 1.19769 1.20924 1.19047 0.88829 0.88532 0.89372 0.88744 0.87409 0.95509 0.95744 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.17 36.01 0.37 -0.28 15 2 C 0.26 3.16 7.84 -155.67 -1.22 1.94 15 3 N -0.46 -6.24 11.24 -8.17 -0.09 -6.33 15 4 C 0.13 1.79 6.94 -84.41 -0.59 1.20 15 5 C 0.30 4.41 15.65 -22.47 -0.35 4.06 15 6 N -0.40 -6.30 18.54 41.84 0.78 -5.52 15 7 C 0.09 1.33 6.84 -83.09 -0.57 0.77 15 8 C 0.28 4.36 15.10 -22.47 -0.34 4.02 15 9 N -0.37 -6.47 18.54 41.84 0.78 -5.69 15 10 N -0.41 -5.64 2.76 -110.64 -0.30 -5.95 15 11 C 0.10 1.49 5.68 -4.05 -0.02 1.47 15 12 C -0.02 -0.44 4.37 -27.88 -0.12 -0.56 15 13 C -0.53 -13.13 9.66 -34.44 -0.33 -13.46 15 14 H 0.08 2.04 7.99 -52.49 -0.42 1.62 15 15 C 0.08 2.05 5.47 -17.82 -0.10 1.95 15 16 N -0.89 -25.15 13.96 55.43 0.77 -24.38 15 17 Si 0.88 19.88 27.47 -169.99 -4.67 15.21 15 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 20 H -0.27 -5.92 6.54 56.52 0.37 -5.55 15 21 H 0.09 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.10 0.65 8.14 -51.93 -0.42 0.23 15 23 H 0.09 0.66 6.99 -51.93 -0.36 0.29 15 24 H 0.09 1.43 7.88 -51.93 -0.41 1.02 15 25 H 0.11 1.35 6.96 -51.93 -0.36 0.99 15 26 H 0.03 0.51 7.57 -51.93 -0.39 0.11 15 27 H 0.02 0.52 7.20 -51.93 -0.37 0.14 15 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 LS Contribution 270.14 15.07 4.07 4.07 Total: -1.00 -28.90 270.14 -4.28 -33.18 By element: Atomic # 1 Polarization: -3.36 SS G_CDS: -2.33 Total: -5.69 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -3.27 Total: 1.10 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 1.93 Total: -47.87 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.67 Total: 15.21 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.90 -4.28 -33.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614676539.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.497 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds