Wall clock time and date at job start Sun Mar 29 2020 22:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30405 * 125.12910 * 2 1 4 4 C 1.34553 * 109.55051 * 180.26582 * 3 2 1 5 5 C 1.43201 * 126.40766 * 179.76574 * 4 3 2 6 6 N 4.66810 * 150.66841 * 359.55240 * 2 1 3 7 7 C 1.39140 * 107.18377 * 359.76332 * 4 3 2 8 8 C 1.43203 * 126.96634 * 179.97438 * 7 4 3 9 9 N 4.71032 * 152.54307 * 180.36666 * 2 1 3 10 10 N 1.34846 * 125.12924 * 179.86277 * 2 1 3 11 11 C 1.46496 * 126.27041 * 359.97438 * 10 2 1 12 12 C 1.52997 * 109.47294 * 269.71648 * 11 10 2 13 13 C 1.50706 * 109.47238 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99515 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00176 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00200 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00139 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47145 * 89.99836 * 17 15 13 19 19 H 1.48496 * 109.47547 * 210.00333 * 17 15 13 20 20 H 1.48499 * 109.47030 * 330.00237 * 17 15 13 21 21 H 1.09004 * 109.47178 * 270.14060 * 1 2 3 22 22 H 1.08993 * 109.47324 * 30.14184 * 1 2 3 23 23 H 1.09001 * 109.47105 * 150.14277 * 1 2 3 24 24 H 1.09001 * 109.47059 * 149.71937 * 11 10 2 25 25 H 1.09004 * 109.47074 * 29.71893 * 11 10 2 26 26 H 1.09001 * 109.46832 * 60.00150 * 12 11 10 27 27 H 1.09000 * 109.47611 * 300.00447 * 12 11 10 28 28 H 0.96999 * 120.00061 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2574 1.0665 0.0000 4 6 3.5535 0.7052 -0.0059 5 6 4.6817 1.5871 -0.0125 6 7 5.5766 2.2867 -0.0179 7 6 3.5925 -0.6857 -0.0043 8 6 4.7603 -1.5144 -0.0094 9 7 5.6867 -2.1718 -0.0139 10 7 2.2829 -1.1028 0.0026 11 6 1.8157 -2.4913 0.0065 12 6 1.6603 -2.9731 1.4503 13 6 1.1790 -4.4013 1.4542 14 1 1.0021 -4.9140 0.5203 15 6 0.9645 -5.0531 2.6500 16 7 0.5450 -6.2996 2.6534 17 14 1.2712 -4.1665 4.2653 18 1 0.0259 -3.4839 4.6995 19 1 1.6831 -5.1496 5.2993 20 1 2.3484 -3.1610 4.0813 21 1 -0.3634 0.0025 1.0277 22 1 -0.3633 0.8886 -0.5160 23 1 -0.3633 -0.8913 -0.5116 24 1 2.5407 -3.1201 -0.5103 25 1 0.8537 -2.5523 -0.5025 26 1 0.9352 -2.3443 1.9671 27 1 2.6222 -2.9121 1.9593 28 1 0.3944 -6.7583 3.4947 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614676539.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:42 Heat of formation + Delta-G solvation = 94.640537 kcal Electronic energy + Delta-G solvation = -14752.247465 eV Core-core repulsion = 12189.980272 eV Total energy + Delta-G solvation = -2562.267193 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.59453 -37.98262 -37.84283 -36.57662 -34.70081 -33.13902 -31.99202 -28.89794 -27.42549 -25.36799 -23.19202 -21.69550 -20.35375 -19.10535 -18.81717 -17.29656 -16.56440 -16.26887 -15.46116 -15.08752 -14.92096 -14.76593 -14.62721 -14.57839 -14.28972 -14.18509 -13.89909 -13.75125 -13.29725 -13.05426 -12.90952 -12.54382 -12.15848 -11.85955 -11.58342 -11.45772 -10.89204 -10.79482 -9.70830 -8.32438 -6.38209 -0.43885 0.86932 1.12943 1.27665 1.34463 1.39889 1.46279 1.58981 1.82367 2.32281 2.43444 2.45015 2.50712 3.04138 3.54476 3.70012 3.88427 4.19969 4.52320 4.55892 4.75468 4.89571 4.96741 5.02625 5.27861 5.31299 5.50470 5.78145 6.07200 6.17081 6.19329 6.50553 6.70809 7.27700 8.82800 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.027385 B = 0.007429 C = 0.006778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.219543 B = 3768.170755 C = 4129.952040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.274 3.726 3 N -0.467 5.467 4 C 0.135 3.865 5 C 0.313 3.687 6 N -0.420 5.420 7 C 0.080 3.920 8 C 0.292 3.708 9 N -0.409 5.409 10 N -0.413 5.413 11 C 0.112 3.888 12 C -0.021 4.021 13 C -0.527 4.527 14 H 0.053 0.947 15 C 0.019 3.981 16 N -0.941 5.941 17 Si 0.933 3.067 18 H -0.255 1.255 19 H -0.292 1.292 20 H -0.257 1.257 21 H 0.103 0.897 22 H 0.118 0.882 23 H 0.103 0.897 24 H 0.089 0.911 25 H 0.138 0.862 26 H 0.043 0.957 27 H 0.010 0.990 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 12.549 -5.077 13.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.011 3.989 3 N -0.186 5.186 4 C -0.004 4.004 5 C -0.004 4.004 6 N -0.098 5.098 7 C -0.045 4.045 8 C -0.024 4.024 9 N -0.086 5.086 10 N -0.091 5.091 11 C -0.007 4.007 12 C -0.059 4.059 13 C -0.566 4.566 14 H 0.071 0.929 15 C -0.180 4.180 16 N -0.581 5.581 17 Si 0.757 3.243 18 H -0.180 1.180 19 H -0.218 1.218 20 H -0.182 1.182 21 H 0.121 0.879 22 H 0.136 0.864 23 H 0.122 0.878 24 H 0.108 0.892 25 H 0.156 0.844 26 H 0.062 0.938 27 H 0.028 0.972 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.592 13.083 -4.986 14.014 hybrid contribution 0.011 -1.188 0.938 1.514 sum -0.581 11.895 -4.048 12.579 Atomic orbital electron populations 1.20740 0.80173 1.06800 1.06110 1.24163 0.97553 0.78683 0.98521 1.70352 0.98673 1.28530 1.21002 1.15561 0.89025 0.85378 1.10461 1.23826 0.91464 0.92114 0.92977 1.81264 1.10523 1.08438 1.09545 1.15922 0.81769 0.90067 1.16720 1.23964 0.92232 0.92811 0.93437 1.81310 1.10835 1.06794 1.09696 1.45799 1.03366 1.10394 1.49548 1.22355 1.03328 0.74879 1.00175 1.19825 0.97296 0.95780 0.92968 1.21103 1.44827 0.96812 0.93836 0.92863 1.25754 0.94223 0.95244 1.02783 1.70011 1.47387 1.12562 1.28116 0.85921 0.80007 0.78862 0.79488 1.17970 1.21837 1.18160 0.87868 0.86359 0.87804 0.89245 0.84428 0.93828 0.97178 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.17 71.24 0.72 -0.28 15 2 C 0.27 5.76 7.84 138.22 1.08 6.84 15 3 N -0.47 -11.36 11.24 -179.75 -2.02 -13.38 15 4 C 0.13 3.53 6.94 40.19 0.28 3.81 15 5 C 0.31 8.71 15.65 88.33 1.38 10.10 15 6 N -0.42 -12.79 18.54 19.00 0.35 -12.44 15 7 C 0.08 2.17 6.84 39.73 0.27 2.45 15 8 C 0.29 8.93 15.10 88.33 1.33 10.26 15 9 N -0.41 -14.02 18.54 19.00 0.35 -13.67 15 10 N -0.41 -10.21 2.76 -503.96 -1.39 -11.60 15 11 C 0.11 3.06 5.68 86.38 0.49 3.55 15 12 C -0.02 -0.77 4.37 29.85 0.13 -0.64 15 13 C -0.53 -25.57 9.66 25.60 0.25 -25.33 15 14 H 0.05 2.79 7.99 -2.91 -0.02 2.76 15 15 C 0.02 0.98 5.47 84.65 0.46 1.44 15 16 N -0.94 -54.02 13.96 21.44 0.30 -53.73 15 17 Si 0.93 40.21 27.47 68.60 1.88 42.10 15 18 H -0.26 -10.24 7.11 99.48 0.71 -9.54 15 19 H -0.29 -12.91 7.11 99.48 0.71 -12.21 15 20 H -0.26 -10.64 6.54 99.48 0.65 -9.98 15 21 H 0.10 1.21 8.14 -2.38 -0.02 1.19 15 22 H 0.12 1.03 8.14 -2.39 -0.02 1.01 15 23 H 0.10 1.03 6.99 -2.39 -0.02 1.02 15 24 H 0.09 2.56 7.88 -2.39 -0.02 2.54 15 25 H 0.14 2.95 6.96 -2.38 -0.02 2.93 15 26 H 0.04 1.50 7.57 -2.39 -0.02 1.48 15 27 H 0.01 0.40 7.20 -2.39 -0.02 0.38 15 28 H 0.27 14.50 8.31 -92.71 -0.77 13.73 15 Total: -1.00 -62.23 270.14 7.03 -55.20 By element: Atomic # 1 Polarization: -5.82 SS G_CDS: 1.14 Total: -4.68 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 6.41 Total: 12.20 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -2.41 Total: -104.82 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 1.88 Total: 42.10 kcal Total: -62.23 7.03 -55.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614676539.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.839 kcal (2) G-P(sol) polarization free energy of solvation -62.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds