Wall clock time and date at job start Sun Mar 29 2020 21:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00142 * 2 1 4 4 C 1.53001 * 109.47341 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47542 * 64.99802 * 4 3 2 6 6 C 1.42901 * 114.00126 * 180.02562 * 5 4 3 7 7 H 1.08999 * 110.76581 * 26.79978 * 6 5 4 8 8 C 1.55135 * 110.70268 * 263.59573 * 6 5 4 9 9 C 1.54906 * 101.65564 * 205.96310 * 8 6 5 10 10 N 1.47852 * 104.79308 * 37.07419 * 9 8 6 11 11 C 1.46902 * 110.99904 * 213.64049 * 10 9 8 12 12 C 1.50706 * 109.46577 * 290.83956 * 11 10 9 13 13 H 1.07995 * 120.00167 * 359.72326 * 12 11 10 14 14 C 1.37879 * 119.99394 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47487 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 C 1.47444 * 108.56461 * 335.89988 * 10 9 8 21 21 H 1.09002 * 109.47161 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47106 * 300.00344 * 1 2 3 23 23 H 1.09004 * 109.47572 * 60.00057 * 1 2 3 24 24 H 1.08994 * 109.47345 * 60.00064 * 3 2 1 25 25 H 1.09000 * 109.47069 * 299.99867 * 3 2 1 26 26 H 1.09007 * 109.46763 * 304.99896 * 4 3 2 27 27 H 1.09004 * 109.47526 * 185.00150 * 4 3 2 28 28 H 1.09001 * 110.99195 * 324.05814 * 8 6 5 29 29 H 1.08999 * 110.99324 * 87.83407 * 8 6 5 30 30 H 1.08993 * 110.37535 * 278.24443 * 9 8 6 31 31 H 1.08996 * 110.37526 * 155.89717 * 9 8 6 32 32 H 1.09000 * 109.47263 * 170.84157 * 11 10 9 33 33 H 1.09001 * 109.47582 * 50.83436 * 11 10 9 34 34 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 35 35 H 1.09006 * 109.88568 * 120.40031 * 20 10 9 36 36 H 1.08998 * 109.89091 * 241.42327 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3812 0.4191 -1.3245 7 1 5.8333 0.3366 -0.3361 8 6 6.0101 1.5937 -2.1192 9 6 7.2937 0.9367 -2.6852 10 7 6.8948 -0.4480 -3.0158 11 6 8.0071 -1.3826 -2.7978 12 6 9.0804 -1.1345 -3.8263 13 1 8.9474 -0.3631 -4.5703 14 6 10.2294 -1.8966 -3.8210 15 7 10.3885 -2.8402 -2.9189 16 14 11.5601 -1.5886 -5.0953 17 1 11.1410 -0.4807 -5.9909 18 1 12.8255 -1.2207 -4.4107 19 1 11.7714 -2.8202 -5.8978 20 6 5.7298 -0.8112 -2.1883 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6886 1.8463 0.8899 25 1 1.6886 1.8463 -0.8900 26 1 3.8514 0.5682 0.8410 27 1 3.9786 2.1765 0.0889 28 1 5.3502 1.9183 -2.9238 29 1 6.2551 2.4253 -1.4585 30 1 8.0825 0.9351 -1.9330 31 1 7.6244 1.4607 -3.5820 32 1 7.6448 -2.4064 -2.8904 33 1 8.4184 -1.2315 -1.7998 34 1 11.1967 -3.3765 -2.9155 35 1 4.8852 -1.0661 -2.8286 36 1 5.9787 -1.6579 -1.5487 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614924025.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:17 Heat of formation + Delta-G solvation = -87.459352 kcal Electronic energy + Delta-G solvation = -16047.806857 eV Core-core repulsion = 13339.300555 eV Total energy + Delta-G solvation = -2708.506302 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.96551 -37.93958 -36.30520 -32.87620 -30.86335 -29.79419 -27.92770 -26.43035 -25.90138 -22.68366 -22.44565 -20.68112 -19.89177 -17.18973 -16.71834 -16.33333 -15.69975 -15.54435 -14.99079 -14.54193 -14.23258 -13.80678 -13.36197 -12.76751 -12.60536 -12.50421 -12.20021 -11.72689 -11.54457 -11.43380 -11.10323 -10.97780 -10.82831 -10.59749 -10.38357 -10.27310 -9.85391 -9.79219 -9.34705 -9.07122 -8.41233 -7.20716 -6.00129 -4.01269 3.33164 3.40340 3.45854 3.61080 3.73808 4.45947 4.83696 4.94086 5.01011 5.07551 5.15220 5.16945 5.23968 5.32106 5.36675 5.38826 5.48929 5.51499 5.61818 5.86469 6.02005 6.15060 6.28685 6.49227 6.63245 6.66039 6.98549 7.23136 7.33072 7.46008 7.84555 8.07869 8.22204 8.56101 9.07250 9.63114 11.10987 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.064007 B = 0.004413 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.350296 B = 6344.045137 C = 6560.532411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.064 3.936 4 C 0.062 3.938 5 O -0.368 6.368 6 C 0.068 3.932 7 H 0.064 0.936 8 C -0.152 4.152 9 C 0.059 3.941 10 N -0.524 5.524 11 C 0.186 3.814 12 C -0.505 4.505 13 H 0.064 0.936 14 C 0.053 3.947 15 N -0.900 5.900 16 Si 0.898 3.102 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.047 3.953 21 H 0.085 0.915 22 H 0.038 0.962 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.031 0.969 33 H -0.007 1.007 34 H 0.260 0.740 35 H 0.077 0.923 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.306 9.277 7.241 19.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.015 4.015 5 O -0.286 6.286 6 C 0.009 3.991 7 H 0.082 0.918 8 C -0.190 4.190 9 C -0.069 4.069 10 N -0.250 5.250 11 C 0.060 3.940 12 C -0.544 4.544 13 H 0.082 0.918 14 C -0.147 4.147 15 N -0.540 5.540 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.210 1.210 20 C -0.081 4.081 21 H 0.104 0.896 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.010 0.990 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.323 8.867 6.624 18.902 hybrid contribution 1.008 0.409 0.508 1.201 sum -14.315 9.277 7.131 18.488 Atomic orbital electron populations 1.22736 0.81329 1.02809 0.99674 1.87997 1.19363 1.27341 1.95315 1.22566 0.92697 0.85420 1.00583 1.22510 0.93003 0.97600 0.88378 1.87983 1.22095 1.81457 1.37055 1.23486 0.80445 0.96606 0.98525 0.91823 1.23231 0.98482 0.97278 0.99998 1.22761 0.94409 0.90300 0.99411 1.63739 1.07207 1.02503 1.51509 1.19983 0.87224 0.91218 0.95540 1.21197 1.00884 1.18230 1.14043 0.91810 1.25005 0.98466 0.95164 0.96107 1.69971 1.27530 1.21543 1.34922 0.86431 0.81392 0.78157 0.81383 1.19633 1.21154 1.21010 1.22818 0.95745 0.94863 0.94722 0.89614 0.94384 0.94072 0.92138 0.92425 0.92628 0.92030 0.90286 0.91811 0.93754 0.90706 0.95099 0.98968 0.93002 0.90481 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.87 10.67 -40.07 -0.43 -5.30 16 3 C 0.06 0.67 6.32 37.16 0.23 0.91 16 4 C 0.06 0.75 6.16 37.16 0.23 0.98 16 5 O -0.37 -5.86 10.03 -40.07 -0.40 -6.26 16 6 C 0.07 1.13 3.44 -24.91 -0.09 1.05 16 7 H 0.06 1.00 7.83 -51.93 -0.41 0.60 16 8 C -0.15 -2.43 6.80 -24.60 -0.17 -2.60 16 9 C 0.06 1.18 6.14 -2.29 -0.01 1.16 16 10 N -0.52 -11.97 5.15 -232.68 -1.20 -13.17 16 11 C 0.19 5.00 4.33 -4.97 -0.02 4.98 16 12 C -0.50 -14.54 8.80 -34.44 -0.30 -14.85 16 13 H 0.06 1.83 7.77 -52.49 -0.41 1.42 16 14 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 16 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 C 0.05 0.93 6.64 -2.83 -0.02 0.92 16 21 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.66 8.11 -51.92 -0.42 0.24 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.92 7.62 -51.93 -0.40 0.52 16 31 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.03 0.89 8.03 -51.93 -0.42 0.47 16 33 H -0.01 -0.21 7.85 -51.93 -0.41 -0.62 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.08 1.53 8.06 -51.93 -0.42 1.11 16 36 H 0.05 1.08 7.55 -51.93 -0.39 0.69 16 LS Contribution 299.50 15.07 4.51 4.51 Total: -1.00 -32.03 299.50 -7.14 -39.17 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -6.21 Total: -4.85 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 0.87 Total: -4.62 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: -0.46 Total: -39.59 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.83 Total: -11.56 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.03 -7.14 -39.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614924025.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.290 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds