Wall clock time and date at job start Sun Mar 29 2020 21:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00142 * 2 1 4 4 C 1.53001 * 109.47341 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47542 * 64.99802 * 4 3 2 6 6 C 1.42901 * 114.00126 * 180.02562 * 5 4 3 7 7 H 1.08999 * 110.76581 * 26.79978 * 6 5 4 8 8 C 1.55135 * 110.70268 * 263.59573 * 6 5 4 9 9 C 1.54906 * 101.65564 * 205.96310 * 8 6 5 10 10 N 1.47852 * 104.79308 * 37.07419 * 9 8 6 11 11 C 1.46902 * 110.99904 * 213.64049 * 10 9 8 12 12 C 1.50706 * 109.46577 * 290.83956 * 11 10 9 13 13 H 1.07995 * 120.00167 * 359.72326 * 12 11 10 14 14 C 1.37879 * 119.99394 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47487 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 C 1.47444 * 108.56461 * 335.89988 * 10 9 8 21 21 H 1.09002 * 109.47161 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47106 * 300.00344 * 1 2 3 23 23 H 1.09004 * 109.47572 * 60.00057 * 1 2 3 24 24 H 1.08994 * 109.47345 * 60.00064 * 3 2 1 25 25 H 1.09000 * 109.47069 * 299.99867 * 3 2 1 26 26 H 1.09007 * 109.46763 * 304.99896 * 4 3 2 27 27 H 1.09004 * 109.47526 * 185.00150 * 4 3 2 28 28 H 1.09001 * 110.99195 * 324.05814 * 8 6 5 29 29 H 1.08999 * 110.99324 * 87.83407 * 8 6 5 30 30 H 1.08993 * 110.37535 * 278.24443 * 9 8 6 31 31 H 1.08996 * 110.37526 * 155.89717 * 9 8 6 32 32 H 1.09000 * 109.47263 * 170.84157 * 11 10 9 33 33 H 1.09001 * 109.47582 * 50.83436 * 11 10 9 34 34 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 35 35 H 1.09006 * 109.88568 * 120.40031 * 20 10 9 36 36 H 1.08998 * 109.89091 * 241.42327 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3812 0.4191 -1.3245 7 1 5.8333 0.3366 -0.3361 8 6 6.0101 1.5937 -2.1192 9 6 7.2937 0.9367 -2.6852 10 7 6.8948 -0.4480 -3.0158 11 6 8.0071 -1.3826 -2.7978 12 6 9.0804 -1.1345 -3.8263 13 1 8.9474 -0.3631 -4.5703 14 6 10.2294 -1.8966 -3.8210 15 7 10.3885 -2.8402 -2.9189 16 14 11.5601 -1.5886 -5.0953 17 1 11.1410 -0.4807 -5.9909 18 1 12.8255 -1.2207 -4.4107 19 1 11.7714 -2.8202 -5.8978 20 6 5.7298 -0.8112 -2.1883 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.6886 1.8463 0.8899 25 1 1.6886 1.8463 -0.8900 26 1 3.8514 0.5682 0.8410 27 1 3.9786 2.1765 0.0889 28 1 5.3502 1.9183 -2.9238 29 1 6.2551 2.4253 -1.4585 30 1 8.0825 0.9351 -1.9330 31 1 7.6244 1.4607 -3.5820 32 1 7.6448 -2.4064 -2.8904 33 1 8.4184 -1.2315 -1.7998 34 1 11.1967 -3.3765 -2.9155 35 1 4.8852 -1.0661 -2.8286 36 1 5.9787 -1.6579 -1.5487 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614924025.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:17 Heat of formation + Delta-G solvation = -111.101718 kcal Electronic energy + Delta-G solvation = -16048.832067 eV Core-core repulsion = 13339.300555 eV Total energy + Delta-G solvation = -2709.531512 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.32548 -38.94304 -37.62258 -34.98274 -32.35176 -31.01467 -29.51328 -27.90603 -27.07118 -24.49001 -23.51581 -22.08168 -21.62176 -18.65795 -18.11232 -17.57902 -17.15520 -16.48494 -16.46947 -15.82291 -15.61339 -15.20581 -15.05844 -14.41193 -14.25265 -13.82728 -13.25959 -13.18340 -13.05277 -12.86641 -12.60602 -12.40196 -12.35155 -12.21791 -11.89863 -11.87467 -11.59057 -11.29017 -10.64890 -10.61535 -10.45130 -9.05855 -8.21882 -6.32682 1.41001 1.42195 1.56210 2.39608 2.60734 2.89519 3.10515 3.32931 3.66536 3.83252 3.99264 4.16734 4.22297 4.36929 4.43071 4.47203 4.55455 4.58893 4.62463 4.70664 4.78102 4.87571 4.91611 4.93497 5.00012 5.08319 5.18216 5.26015 5.64675 6.01188 6.20274 6.27688 6.34453 6.53016 6.83446 7.37550 8.89812 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.064007 B = 0.004413 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.350296 B = 6344.045137 C = 6560.532411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.062 3.938 4 C 0.052 3.948 5 O -0.385 6.385 6 C 0.080 3.920 7 H 0.073 0.927 8 C -0.133 4.133 9 C 0.055 3.945 10 N -0.538 5.538 11 C 0.202 3.798 12 C -0.525 4.525 13 H 0.062 0.938 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.974 3.026 17 H -0.263 1.263 18 H -0.276 1.276 19 H -0.278 1.278 20 C 0.042 3.958 21 H 0.089 0.911 22 H 0.058 0.942 23 H 0.047 0.953 24 H 0.092 0.908 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.000 1.000 33 H -0.032 1.032 34 H 0.265 0.735 35 H 0.074 0.926 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.766 11.179 7.285 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.014 4.014 4 C -0.024 4.024 5 O -0.304 6.304 6 C 0.021 3.979 7 H 0.091 0.909 8 C -0.171 4.171 9 C -0.073 4.073 10 N -0.263 5.263 11 C 0.076 3.924 12 C -0.563 4.563 13 H 0.081 0.919 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.798 3.202 17 H -0.187 1.187 18 H -0.201 1.201 19 H -0.204 1.204 20 C -0.086 4.086 21 H 0.107 0.893 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.110 0.890 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.018 0.982 33 H -0.014 1.014 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.814 10.788 6.676 20.274 hybrid contribution 1.054 -0.200 0.541 1.201 sum -14.760 10.588 7.217 19.546 Atomic orbital electron populations 1.22904 0.79587 1.03571 1.00945 1.87940 1.21469 1.28860 1.95615 1.22708 0.91529 0.84958 1.02213 1.22848 0.94312 0.98599 0.86626 1.87955 1.21031 1.82167 1.39218 1.23217 0.81515 0.94913 0.98279 0.90856 1.23136 0.95976 0.97587 1.00422 1.22809 0.96306 0.88882 0.99276 1.63606 1.06521 1.03324 1.52854 1.19621 0.88156 0.90691 0.93952 1.21474 1.01836 1.18509 1.14466 0.91938 1.25967 1.00950 0.94620 0.98254 1.70096 1.28478 1.22376 1.36643 0.85269 0.78087 0.78333 0.78523 1.18680 1.20139 1.20386 1.22798 0.94432 0.96466 0.94897 0.89267 0.92384 0.93450 0.88988 0.92155 0.92782 0.89357 0.89798 0.88282 0.94931 0.90898 0.98202 1.01386 0.92594 0.90817 0.94135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.42 -10.13 10.67 -144.35 -1.54 -11.66 16 3 C 0.06 1.16 6.32 71.98 0.45 1.61 16 4 C 0.05 1.13 6.16 71.98 0.44 1.57 16 5 O -0.38 -11.64 10.03 -144.35 -1.45 -13.09 16 6 C 0.08 2.56 3.44 31.77 0.11 2.66 16 7 H 0.07 2.21 7.83 -2.39 -0.02 2.19 16 8 C -0.13 -3.96 6.80 31.98 0.22 -3.74 16 9 C 0.05 2.16 6.14 86.77 0.53 2.69 16 10 N -0.54 -25.07 5.15 -890.06 -4.59 -29.66 16 11 C 0.20 11.34 4.33 85.56 0.37 11.71 16 12 C -0.52 -30.80 8.80 25.60 0.23 -30.57 16 13 H 0.06 3.60 7.77 -2.91 -0.02 3.58 16 14 C 0.00 0.00 5.46 84.66 0.46 0.46 16 15 N -0.94 -57.45 13.29 21.45 0.28 -57.17 16 16 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 17 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 C 0.04 1.72 6.64 86.65 0.58 2.29 16 21 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 22 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 23 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 26 H 0.05 1.18 8.11 -2.38 -0.02 1.16 16 27 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.03 1.35 7.62 -2.39 -0.02 1.33 16 31 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.00 -0.01 8.03 -2.39 -0.02 -0.03 16 33 H -0.03 -1.87 7.85 -2.39 -0.02 -1.89 16 34 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.07 2.99 8.06 -2.38 -0.02 2.97 16 36 H 0.04 1.71 7.55 -2.39 -0.02 1.69 16 Total: -1.00 -69.85 299.50 0.40 -69.45 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.02 Total: 4.71 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 4.64 Total: -9.65 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -4.30 Total: -86.83 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -2.99 Total: -24.75 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -69.85 0.40 -69.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614924025.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.651 kcal (2) G-P(sol) polarization free energy of solvation -69.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds