Wall clock time and date at job start Sun Mar 29 2020 21:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46897 * 110.99768 * 2 1 4 4 C 1.50708 * 109.47074 * 69.66364 * 3 2 1 5 5 H 1.07993 * 119.99713 * 359.72597 * 4 3 2 6 6 C 1.37875 * 119.99840 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99840 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00413 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47150 * 89.99306 * 8 6 4 10 10 H 1.48490 * 109.47635 * 209.99726 * 8 6 4 11 11 H 1.48504 * 109.46982 * 329.99963 * 8 6 4 12 12 C 1.46897 * 111.00023 * 236.04885 * 2 1 3 13 13 C 1.52999 * 109.54164 * 307.05554 * 12 2 1 14 14 O 1.42902 * 109.47391 * 305.93133 * 13 12 2 15 15 C 1.53183 * 109.54161 * 186.88550 * 12 2 1 16 16 C 1.53098 * 109.15419 * 183.23869 * 15 12 2 17 17 O 1.42906 * 109.49096 * 57.47268 * 16 15 12 18 18 C 1.42898 * 114.09654 * 298.89159 * 17 16 15 19 19 C 1.53093 * 109.41998 * 61.15380 * 18 17 16 20 20 H 1.09002 * 109.46838 * 59.99727 * 1 2 3 21 21 H 1.08999 * 109.46858 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46939 * 299.99884 * 1 2 3 23 23 H 1.08994 * 109.47425 * 309.66715 * 3 2 1 24 24 H 1.08998 * 109.47098 * 189.66301 * 3 2 1 25 25 H 0.97003 * 119.99999 * 180.02562 * 7 6 4 26 26 H 1.09008 * 109.47053 * 65.93204 * 13 12 2 27 27 H 1.09002 * 109.47125 * 185.92776 * 13 12 2 28 28 H 0.96702 * 113.99422 * 179.97438 * 14 13 12 29 29 H 1.09003 * 109.51602 * 303.05565 * 15 12 2 30 30 H 1.08998 * 109.52282 * 63.23895 * 15 12 2 31 31 H 1.09000 * 109.41097 * 297.49064 * 16 15 12 32 32 H 1.09006 * 109.48943 * 177.50358 * 16 15 12 33 33 H 1.09006 * 109.47545 * 301.16862 * 18 17 16 34 34 H 1.09002 * 109.49311 * 181.14443 * 18 17 16 35 35 H 1.08997 * 109.52125 * 182.49106 * 19 18 17 36 36 H 1.08993 * 109.57221 * 62.33076 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7145 2.0174 1.3323 5 1 1.1928 1.4659 2.1004 6 6 2.1189 3.3141 1.5687 7 7 1.8741 3.8776 2.7316 8 14 3.0146 4.2706 0.2375 9 1 2.0263 4.9949 -0.6016 10 1 3.9397 5.2470 0.8667 11 1 3.7897 3.3303 -0.6113 12 6 1.9955 -0.7659 -1.1376 13 6 1.3678 -2.1611 -1.1496 14 8 1.5693 -2.7851 0.1201 15 6 3.5171 -0.8898 -1.0117 16 6 4.0653 -1.6186 -2.2415 17 8 3.6895 -0.9085 -3.4233 18 6 2.2776 -0.8042 -3.6172 19 6 1.6577 -0.0407 -2.4439 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.5133 1.9457 -0.7910 24 1 3.0714 1.3476 -0.1725 25 1 2.1584 4.7900 2.8978 26 1 0.2991 -2.0771 -1.3476 27 1 1.8354 -2.7633 -1.9287 28 1 1.1959 -3.6748 0.1847 29 1 3.9597 0.1046 -0.9517 30 1 3.7635 -1.4540 -0.1122 31 1 3.6545 -2.6276 -2.2776 32 1 5.1523 -1.6706 -2.1789 33 1 1.8434 -1.8026 -3.6713 34 1 2.0764 -0.2696 -4.5455 35 1 0.5756 0.0015 -2.5677 36 1 2.0607 0.9715 -2.4133 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616830270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:17 Heat of formation + Delta-G solvation = -79.204463 kcal Electronic energy + Delta-G solvation = -17577.808525 eV Core-core repulsion = 14869.660182 eV Total energy + Delta-G solvation = -2708.148343 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.16007 -37.01630 -35.68099 -32.74410 -31.50244 -30.98548 -28.28429 -26.02308 -25.44963 -23.38101 -22.51841 -20.99686 -18.06257 -17.15225 -16.97981 -16.14519 -15.90032 -15.16338 -14.83446 -14.39356 -14.15246 -13.53934 -13.44041 -12.94277 -12.77589 -12.40580 -12.10749 -11.94958 -11.47648 -11.39120 -11.01734 -11.00142 -10.66529 -10.44391 -10.25576 -9.85848 -9.75347 -9.67743 -9.29881 -9.17251 -8.52600 -7.24088 -6.01045 -3.97201 3.30005 3.38081 3.40884 3.97967 4.32681 4.45252 4.72329 4.94990 4.99436 5.15480 5.25383 5.28612 5.33514 5.37975 5.49522 5.63751 5.72076 5.80645 5.86940 6.09672 6.13904 6.17711 6.32194 6.45406 6.63732 6.72076 6.90301 7.02593 7.29754 7.67340 7.84599 7.97795 8.12438 8.71717 9.09350 9.61129 11.12316 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.028291 B = 0.009730 C = 0.008289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.485221 B = 2877.019116 C = 3376.988510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.504 5.504 3 C 0.157 3.843 4 C -0.504 4.504 5 H 0.080 0.920 6 C 0.067 3.933 7 N -0.902 5.902 8 Si 0.872 3.128 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.266 1.266 12 C 0.113 3.887 13 C 0.086 3.914 14 O -0.545 6.545 15 C -0.141 4.141 16 C 0.061 3.939 17 O -0.385 6.385 18 C 0.065 3.935 19 C -0.188 4.188 20 H 0.010 0.990 21 H 0.050 0.950 22 H 0.077 0.923 23 H -0.016 1.016 24 H 0.032 0.968 25 H 0.263 0.737 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.366 0.634 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.254 -12.388 -11.909 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.226 5.226 3 C 0.031 3.969 4 C -0.542 4.542 5 H 0.098 0.902 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.699 3.301 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.023 3.977 13 C 0.008 3.992 14 O -0.347 6.347 15 C -0.179 4.179 16 C -0.016 4.016 17 O -0.304 6.304 18 C -0.012 4.012 19 C -0.227 4.227 20 H 0.028 0.972 21 H 0.069 0.931 22 H 0.096 0.904 23 H 0.001 0.999 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.210 0.790 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.365 -11.783 -11.344 16.361 hybrid contribution -0.404 0.523 -1.320 1.476 sum -0.039 -11.261 -12.664 16.947 Atomic orbital electron populations 1.22291 0.88622 0.99615 1.00788 1.62119 1.06859 1.15916 1.37690 1.20305 0.95334 0.84112 0.97103 1.21043 1.37191 0.97567 0.98407 0.90183 1.24891 0.95775 0.97418 0.95292 1.69897 1.47636 1.14130 1.22441 0.86908 0.80314 0.80300 0.82535 1.20433 1.21138 1.19115 1.21048 0.95205 0.92076 0.89418 1.22333 0.98189 0.93302 0.85422 1.86730 1.81499 1.32952 1.33563 1.22233 0.94421 1.02681 0.98573 1.22688 1.00147 0.94165 0.84620 1.87900 1.22334 1.77019 1.43166 1.22535 0.81676 0.98929 0.98076 1.22926 1.01559 1.01955 0.96284 0.97194 0.93095 0.90442 0.99888 0.94989 0.92749 0.93962 0.94140 0.78974 0.90342 0.89304 0.93442 0.88959 0.93553 0.89272 0.90887 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 8.60 60.07 0.52 1.20 16 2 N -0.50 -10.76 4.30 -228.38 -0.98 -11.75 16 3 C 0.16 3.89 2.71 -4.97 -0.01 3.88 16 4 C -0.50 -14.65 9.12 -34.44 -0.31 -14.96 16 5 H 0.08 2.55 7.59 -52.49 -0.40 2.15 16 6 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 8 Si 0.87 22.00 27.47 -169.99 -4.67 17.33 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 12 C 0.11 1.95 0.24 -131.42 -0.03 1.92 16 13 C 0.09 1.20 4.57 37.16 0.17 1.37 16 14 O -0.54 -8.03 12.84 -35.23 -0.45 -8.48 16 15 C -0.14 -2.42 4.82 -26.59 -0.13 -2.55 16 16 C 0.06 0.84 6.57 37.21 0.24 1.09 16 17 O -0.39 -5.85 10.77 -35.23 -0.38 -6.23 16 18 C 0.07 0.86 6.57 37.21 0.24 1.11 16 19 C -0.19 -2.96 4.24 -26.59 -0.11 -3.08 16 20 H 0.01 0.18 6.76 -51.93 -0.35 -0.17 16 21 H 0.05 0.86 6.02 -51.93 -0.31 0.55 16 22 H 0.08 1.69 7.11 -51.93 -0.37 1.32 16 23 H -0.02 -0.41 6.37 -51.93 -0.33 -0.74 16 24 H 0.03 0.81 4.84 -51.93 -0.25 0.56 16 25 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.04 0.55 6.61 -51.92 -0.34 0.21 16 27 H 0.04 0.48 5.05 -51.93 -0.26 0.22 16 28 H 0.37 3.43 9.12 45.56 0.42 3.84 16 29 H 0.08 1.52 6.09 -51.93 -0.32 1.21 16 30 H 0.09 1.58 7.79 -51.93 -0.40 1.18 16 31 H 0.05 0.58 6.48 -51.93 -0.34 0.24 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.52 6.74 -51.93 -0.35 0.17 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.07 6.84 -51.93 -0.36 0.72 16 36 H 0.08 1.53 6.51 -51.93 -0.34 1.19 16 LS Contribution 267.50 15.07 4.03 4.03 Total: -1.00 -33.10 267.50 -5.52 -38.62 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.32 Total: 1.95 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 0.48 Total: -8.13 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: -0.21 Total: -39.09 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.83 Total: -14.71 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.10 -5.52 -38.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616830270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.589 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds