Wall clock time and date at job start Sun Mar 29 2020 21:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46897 * 110.99768 * 2 1 4 4 C 1.50708 * 109.47074 * 69.66364 * 3 2 1 5 5 H 1.07993 * 119.99713 * 359.72597 * 4 3 2 6 6 C 1.37875 * 119.99840 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99840 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00413 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47150 * 89.99306 * 8 6 4 10 10 H 1.48490 * 109.47635 * 209.99726 * 8 6 4 11 11 H 1.48504 * 109.46982 * 329.99963 * 8 6 4 12 12 C 1.46897 * 111.00023 * 236.04885 * 2 1 3 13 13 C 1.52999 * 109.54164 * 307.05554 * 12 2 1 14 14 O 1.42902 * 109.47391 * 305.93133 * 13 12 2 15 15 C 1.53183 * 109.54161 * 186.88550 * 12 2 1 16 16 C 1.53098 * 109.15419 * 183.23869 * 15 12 2 17 17 O 1.42906 * 109.49096 * 57.47268 * 16 15 12 18 18 C 1.42898 * 114.09654 * 298.89159 * 17 16 15 19 19 C 1.53093 * 109.41998 * 61.15380 * 18 17 16 20 20 H 1.09002 * 109.46838 * 59.99727 * 1 2 3 21 21 H 1.08999 * 109.46858 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46939 * 299.99884 * 1 2 3 23 23 H 1.08994 * 109.47425 * 309.66715 * 3 2 1 24 24 H 1.08998 * 109.47098 * 189.66301 * 3 2 1 25 25 H 0.97003 * 119.99999 * 180.02562 * 7 6 4 26 26 H 1.09008 * 109.47053 * 65.93204 * 13 12 2 27 27 H 1.09002 * 109.47125 * 185.92776 * 13 12 2 28 28 H 0.96702 * 113.99422 * 179.97438 * 14 13 12 29 29 H 1.09003 * 109.51602 * 303.05565 * 15 12 2 30 30 H 1.08998 * 109.52282 * 63.23895 * 15 12 2 31 31 H 1.09000 * 109.41097 * 297.49064 * 16 15 12 32 32 H 1.09006 * 109.48943 * 177.50358 * 16 15 12 33 33 H 1.09006 * 109.47545 * 301.16862 * 18 17 16 34 34 H 1.09002 * 109.49311 * 181.14443 * 18 17 16 35 35 H 1.08997 * 109.52125 * 182.49106 * 19 18 17 36 36 H 1.08993 * 109.57221 * 62.33076 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7145 2.0174 1.3323 5 1 1.1928 1.4659 2.1004 6 6 2.1189 3.3141 1.5687 7 7 1.8741 3.8776 2.7316 8 14 3.0146 4.2706 0.2375 9 1 2.0263 4.9949 -0.6016 10 1 3.9397 5.2470 0.8667 11 1 3.7897 3.3303 -0.6113 12 6 1.9955 -0.7659 -1.1376 13 6 1.3678 -2.1611 -1.1496 14 8 1.5693 -2.7851 0.1201 15 6 3.5171 -0.8898 -1.0117 16 6 4.0653 -1.6186 -2.2415 17 8 3.6895 -0.9085 -3.4233 18 6 2.2776 -0.8042 -3.6172 19 6 1.6577 -0.0407 -2.4439 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.5133 1.9457 -0.7910 24 1 3.0714 1.3476 -0.1725 25 1 2.1584 4.7900 2.8978 26 1 0.2991 -2.0771 -1.3476 27 1 1.8354 -2.7633 -1.9287 28 1 1.1959 -3.6748 0.1847 29 1 3.9597 0.1046 -0.9517 30 1 3.7635 -1.4540 -0.1122 31 1 3.6545 -2.6276 -2.2776 32 1 5.1523 -1.6706 -2.1789 33 1 1.8434 -1.8026 -3.6713 34 1 2.0764 -0.2696 -4.5455 35 1 0.5756 0.0015 -2.5677 36 1 2.0607 0.9715 -2.4133 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616830270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:17 Heat of formation + Delta-G solvation = -107.507422 kcal Electronic energy + Delta-G solvation = -17579.035833 eV Core-core repulsion = 14869.660182 eV Total energy + Delta-G solvation = -2709.375651 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.41987 -38.27243 -36.97392 -34.80249 -33.06006 -32.16232 -30.12919 -27.33982 -27.02983 -24.53777 -24.00423 -22.74310 -19.35726 -19.09528 -18.26018 -17.50472 -17.04455 -16.61542 -16.31655 -15.82125 -15.57417 -15.10726 -15.02688 -14.41914 -14.27129 -14.19976 -13.34859 -13.30064 -12.99526 -12.87620 -12.78117 -12.61190 -12.12504 -11.85824 -11.82613 -11.71351 -11.45611 -11.00701 -10.79882 -10.78670 -10.41451 -8.88071 -8.30907 -6.32837 1.28506 1.31247 1.42129 2.30452 2.93721 3.01007 3.09741 3.44419 3.73697 3.83620 4.01562 4.18583 4.26245 4.28113 4.33142 4.47777 4.54854 4.59458 4.67408 4.77286 4.79438 4.82461 4.88417 5.01778 5.07437 5.19081 5.25762 5.29601 5.57464 5.99529 6.24190 6.43920 6.67638 6.73737 7.08832 7.30227 8.86177 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.028291 B = 0.009730 C = 0.008289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.485221 B = 2877.019116 C = 3376.988510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.526 5.526 3 C 0.174 3.826 4 C -0.513 4.513 5 H 0.034 0.966 6 C 0.009 3.991 7 N -0.948 5.948 8 Si 0.944 3.056 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.255 1.255 12 C 0.103 3.897 13 C 0.091 3.909 14 O -0.572 6.572 15 C -0.141 4.141 16 C 0.068 3.932 17 O -0.401 6.401 18 C 0.067 3.933 19 C -0.185 4.185 20 H 0.022 0.978 21 H 0.081 0.919 22 H 0.040 0.960 23 H -0.016 1.016 24 H 0.026 0.974 25 H 0.267 0.733 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.389 0.611 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.033 -13.906 -14.791 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.249 5.249 3 C 0.047 3.953 4 C -0.551 4.551 5 H 0.053 0.947 6 C -0.189 4.189 7 N -0.589 5.589 8 Si 0.767 3.233 9 H -0.191 1.191 10 H -0.204 1.204 11 H -0.179 1.179 12 C 0.013 3.987 13 C 0.013 3.987 14 O -0.379 6.379 15 C -0.179 4.179 16 C -0.009 4.009 17 O -0.320 6.320 18 C -0.010 4.010 19 C -0.224 4.224 20 H 0.040 0.960 21 H 0.099 0.901 22 H 0.059 0.941 23 H 0.001 0.999 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.238 0.762 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.124 0.876 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.103 0.897 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.571 -13.343 -14.240 19.523 hybrid contribution -0.525 0.907 -0.326 1.098 sum 0.047 -12.435 -14.566 19.152 Atomic orbital electron populations 1.22213 0.87792 1.01130 0.99540 1.61967 1.07830 1.14029 1.41049 1.19941 0.94979 0.86126 0.94210 1.21289 1.36527 0.97811 0.99473 0.94736 1.25810 0.96685 0.98558 0.97804 1.70050 1.49187 1.14815 1.24818 0.85769 0.79271 0.78788 0.79464 1.19065 1.20359 1.17938 1.21291 0.95271 0.93611 0.88515 1.22298 0.98922 0.91432 0.86019 1.86675 1.82117 1.34948 1.34166 1.22207 0.94686 1.01059 0.99972 1.22706 1.01052 0.94536 0.82587 1.87893 1.23567 1.77381 1.43152 1.22692 0.80631 1.00348 0.97364 1.22872 1.02378 1.00465 0.96717 0.96004 0.90093 0.94077 0.99875 0.95655 0.92433 0.92578 0.91041 0.76216 0.93684 0.90712 0.90818 0.87643 0.90556 0.87403 0.89695 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 8.60 127.69 1.10 2.70 16 2 N -0.53 -22.54 4.30 -876.45 -3.77 -26.30 16 3 C 0.17 8.77 2.71 85.56 0.23 9.01 16 4 C -0.51 -31.07 9.12 25.60 0.23 -30.84 16 5 H 0.03 2.34 7.59 -2.91 -0.02 2.32 16 6 C 0.01 0.52 5.47 84.65 0.46 0.98 16 7 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 8 Si 0.94 46.06 27.47 68.60 1.88 47.94 16 9 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.26 -11.91 6.54 99.48 0.65 -11.25 16 12 C 0.10 3.37 0.24 3.65 0.00 3.37 16 13 C 0.09 2.22 4.57 71.98 0.33 2.55 16 14 O -0.57 -15.37 12.84 -148.98 -1.91 -17.29 16 15 C -0.14 -4.69 4.82 30.69 0.15 -4.54 16 16 C 0.07 1.68 6.57 72.01 0.47 2.15 16 17 O -0.40 -10.81 10.77 -148.98 -1.60 -12.42 16 18 C 0.07 1.49 6.57 72.01 0.47 1.96 16 19 C -0.18 -5.39 4.24 30.68 0.13 -5.26 16 20 H 0.02 0.78 6.76 -2.39 -0.02 0.76 16 21 H 0.08 2.60 6.02 -2.39 -0.01 2.59 16 22 H 0.04 1.86 7.11 -2.39 -0.02 1.84 16 23 H -0.02 -0.81 6.37 -2.39 -0.02 -0.82 16 24 H 0.03 1.31 4.84 -2.39 -0.01 1.30 16 25 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 26 H 0.06 1.22 6.61 -2.38 -0.02 1.20 16 27 H 0.07 1.32 5.05 -2.39 -0.01 1.31 16 28 H 0.39 6.05 9.12 -74.06 -0.68 5.37 16 29 H 0.04 1.76 6.09 -2.39 -0.01 1.75 16 30 H 0.07 2.64 7.79 -2.39 -0.02 2.62 16 31 H 0.07 1.46 6.48 -2.39 -0.02 1.44 16 32 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.08 1.28 6.74 -2.38 -0.02 1.27 16 34 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 2.24 6.84 -2.39 -0.02 2.22 16 36 H 0.05 1.84 6.51 -2.39 -0.02 1.83 16 Total: -1.00 -74.50 267.50 -1.16 -75.66 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.36 Total: 11.12 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 3.58 Total: -17.92 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -3.47 Total: -87.09 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -3.52 Total: -29.70 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.88 Total: 47.94 kcal Total: -74.50 -1.16 -75.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616830270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.850 kcal (2) G-P(sol) polarization free energy of solvation -74.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds