Wall clock time and date at job start Sun Mar 29 2020 22:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 119.99736 * 2 1 4 4 H 1.48501 * 109.46996 * 270.00002 * 3 2 1 5 5 H 1.48505 * 109.47390 * 29.99894 * 3 2 1 6 6 H 1.48503 * 109.47242 * 150.00183 * 3 2 1 7 7 C 1.37870 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99983 * 173.55553 * 7 2 1 9 9 C 1.50697 * 120.00191 * 353.55966 * 7 2 1 10 10 C 1.53005 * 115.54927 * 85.40713 * 9 7 2 11 11 N 1.46500 * 109.46942 * 65.12975 * 10 9 7 12 12 C 1.34782 * 119.99942 * 178.21726 * 11 10 9 13 13 O 1.21583 * 119.99622 * 0.26827 * 12 11 10 14 14 N 1.34770 * 119.99918 * 180.27587 * 12 11 10 15 15 C 1.46505 * 119.99997 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47199 * 179.97438 * 15 14 12 17 17 F 1.39904 * 109.47060 * 179.97438 * 16 15 14 18 18 C 1.53005 * 117.50005 * 231.07837 * 9 7 2 19 19 C 1.52995 * 117.50230 * 299.73800 * 9 7 2 20 20 H 0.97003 * 120.00760 * 5.06540 * 1 2 3 21 21 H 1.08999 * 109.47098 * 305.12838 * 10 9 7 22 22 H 1.09001 * 109.47169 * 185.12356 * 10 9 7 23 23 H 0.96998 * 120.00062 * 358.49050 * 11 10 9 24 24 H 0.96999 * 120.00718 * 359.97438 * 14 12 11 25 25 H 1.09009 * 109.46638 * 299.99747 * 15 14 12 26 26 H 1.08997 * 109.47154 * 59.99301 * 15 14 12 27 27 H 1.08999 * 109.46658 * 299.99500 * 16 15 14 28 28 H 1.08994 * 109.47373 * 60.00133 * 16 15 14 29 29 H 1.09006 * 117.49485 * 215.00160 * 18 9 7 30 30 H 1.08992 * 117.49885 * 0.02562 * 18 9 7 31 31 H 1.09009 * 117.49505 * 359.97438 * 19 9 7 32 32 H 1.08997 * 117.50195 * 144.96842 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0794 -1.1969 -0.1044 9 6 1.2582 -2.4949 0.1475 10 6 0.7023 -3.0869 -1.1493 11 7 1.8115 -3.4596 -2.0307 12 6 1.5606 -4.0381 -3.2219 13 8 0.4134 -4.2461 -3.5670 14 7 2.5812 -4.3860 -4.0304 15 6 2.3084 -5.0143 -5.3255 16 6 3.6298 -5.3053 -6.0396 17 9 3.3693 -5.9058 -7.2761 18 6 1.7470 -3.4728 1.2180 19 6 0.4417 -2.7006 1.4249 20 1 -0.4851 0.8367 -0.0742 21 1 0.0755 -2.3471 -1.6470 22 1 0.1080 -3.9713 -0.9195 23 1 2.7267 -3.2937 -1.7553 24 1 3.4963 -4.2199 -3.7553 25 1 1.7660 -5.9470 -5.1698 26 1 1.7063 -4.3415 -5.9361 27 1 4.1717 -4.3725 -6.1953 28 1 4.2322 -5.9780 -5.4292 29 1 1.6726 -4.5379 0.9983 30 1 2.6081 -3.1750 1.8162 31 1 0.4446 -1.8950 2.1592 32 1 -0.4918 -3.2572 1.3414 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619560652.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:14 Heat of formation + Delta-G solvation = -87.282949 kcal Electronic energy + Delta-G solvation = -15860.170160 eV Core-core repulsion = 12962.785292 eV Total energy + Delta-G solvation = -2897.384868 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.64835 -40.95597 -38.57793 -36.11689 -34.95475 -33.94991 -30.68425 -27.91362 -26.87288 -23.82520 -22.95040 -21.89155 -21.23056 -19.34168 -18.15680 -17.48199 -17.41178 -16.66858 -16.33302 -16.27150 -15.93904 -15.61271 -14.98253 -14.70883 -14.41415 -14.29411 -13.56955 -13.42777 -12.90187 -12.82913 -12.33253 -12.18499 -12.02234 -11.86385 -11.54175 -11.33104 -10.83655 -10.45021 -10.35122 -10.03808 -9.61963 -8.07982 -6.21151 1.43298 1.46425 1.54472 1.72575 2.20978 2.43910 3.20392 3.29568 3.57989 3.62737 3.89909 4.13997 4.26919 4.38837 4.58229 4.67553 4.70201 4.75824 4.89359 5.01910 5.06108 5.29430 5.43970 5.60273 5.63148 5.71262 5.80299 6.12134 6.38486 6.86121 7.22199 7.48433 7.65508 8.99718 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.029177 B = 0.005937 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.442300 B = 4715.198208 C = 5218.406321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 0.950 3.050 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.262 1.262 7 C -0.502 4.502 8 H 0.066 0.934 9 C 0.003 3.997 10 C 0.199 3.801 11 N -0.712 5.712 12 C 0.696 3.304 13 O -0.647 6.647 14 N -0.730 5.730 15 C 0.107 3.893 16 C 0.064 3.936 17 F -0.224 7.224 18 C -0.174 4.174 19 C -0.160 4.160 20 H 0.258 0.742 21 H 0.025 0.975 22 H 0.033 0.967 23 H 0.409 0.591 24 H 0.416 0.584 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.314 -8.211 -6.440 14.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.776 3.224 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.186 1.186 7 C -0.540 4.540 8 H 0.084 0.916 9 C 0.003 3.997 10 C 0.074 3.926 11 N -0.365 5.365 12 C 0.395 3.605 13 O -0.530 6.530 14 N -0.388 5.388 15 C -0.019 4.019 16 C 0.009 3.991 17 F -0.205 7.205 18 C -0.211 4.211 19 C -0.198 4.198 20 H 0.067 0.933 21 H 0.044 0.956 22 H 0.051 0.949 23 H 0.245 0.755 24 H 0.253 0.747 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.121 -8.283 -6.703 14.026 hybrid contribution 0.453 1.283 0.220 1.378 sum 9.574 -7.000 -6.483 13.516 Atomic orbital electron populations 1.70106 1.07366 1.27318 1.49928 1.25714 0.95413 1.02131 0.94443 0.85680 0.78982 0.79791 0.77908 1.20667 1.21771 1.18612 1.20655 0.93178 0.89443 1.50704 0.91576 1.19082 0.99812 0.94592 0.86255 1.20410 0.87037 0.95210 0.89984 1.44873 1.11131 1.63508 1.17031 1.16157 0.84689 0.78631 0.80983 1.90859 1.22178 1.63568 1.76382 1.44542 1.08600 1.66682 1.18973 1.21669 0.98535 0.98246 0.83413 1.22120 0.95695 1.00713 0.80619 1.92761 1.95638 1.86045 1.46041 1.23006 0.97298 0.96251 1.04524 1.22436 0.93854 1.01453 1.02106 0.93271 0.95630 0.94909 0.75543 0.74695 0.91768 0.92420 0.87796 0.87317 0.89266 0.89418 0.91794 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.27 12.91 21.44 0.28 -50.99 16 2 C 0.02 1.23 5.39 84.65 0.46 1.69 16 3 Si 0.95 41.52 29.55 68.60 2.03 43.54 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.50 -24.99 8.63 25.60 0.22 -24.77 16 8 H 0.07 3.13 7.82 -2.91 -0.02 3.11 16 9 C 0.00 0.16 1.38 -52.93 -0.07 0.08 16 10 C 0.20 9.07 5.50 86.38 0.48 9.54 16 11 N -0.71 -26.57 5.48 -478.53 -2.62 -29.19 16 12 C 0.70 25.70 8.57 179.05 1.53 27.24 16 13 O -0.65 -30.30 16.34 -3.98 -0.06 -30.36 16 14 N -0.73 -17.96 5.56 -478.53 -2.66 -20.62 16 15 C 0.11 2.37 6.13 86.38 0.53 2.90 16 16 C 0.06 0.88 7.67 71.98 0.55 1.43 16 17 F -0.22 -4.42 17.36 44.97 0.78 -3.64 16 18 C -0.17 -6.68 9.96 30.62 0.30 -6.37 16 19 C -0.16 -7.19 9.42 30.62 0.29 -6.90 16 20 H 0.26 14.09 8.32 -92.71 -0.77 13.32 16 21 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.03 1.49 8.09 -2.39 -0.02 1.47 16 23 H 0.41 13.05 8.38 -92.71 -0.78 12.27 16 24 H 0.42 6.89 8.49 -92.71 -0.79 6.11 16 25 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 3.03 8.14 -2.38 -0.02 3.01 16 30 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.06 3.09 8.14 -2.38 -0.02 3.08 16 32 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -66.89 285.53 1.59 -65.30 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -0.43 Total: 21.12 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 4.29 Total: 4.84 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -5.01 Total: -100.80 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.06 Total: -30.36 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.78 Total: -3.64 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -66.89 1.59 -65.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619560652.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.987 kcal (2) G-P(sol) polarization free energy of solvation -66.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds