Wall clock time and date at job start Sun Mar 29 2020 21:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47258 * 2 1 4 4 H 1.08997 * 109.47117 * 303.20844 * 3 2 1 5 5 C 1.50702 * 109.47524 * 183.20731 * 3 2 1 6 6 H 1.07993 * 120.00418 * 240.00503 * 5 3 2 7 7 C 1.37882 * 119.99616 * 60.00217 * 5 3 2 8 8 N 1.31510 * 120.00041 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99893 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47293 * 59.99485 * 9 7 5 11 11 H 1.48500 * 109.47053 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46897 * 299.99877 * 9 7 5 13 13 N 1.46906 * 109.47116 * 63.20819 * 3 2 1 14 14 C 1.46851 * 110.99565 * 66.78806 * 13 3 2 15 15 C 1.53040 * 109.51934 * 185.83766 * 14 13 3 16 16 C 1.53109 * 109.28106 * 300.82625 * 15 14 13 17 17 C 1.53001 * 109.52243 * 177.56147 * 16 15 14 18 18 F 1.39900 * 109.47460 * 64.99844 * 17 16 15 19 19 C 1.53120 * 109.16367 * 57.65242 * 16 15 14 20 20 C 1.46838 * 111.00206 * 190.99976 * 13 3 2 21 21 H 1.09000 * 109.47096 * 304.77589 * 1 2 3 22 22 H 1.09002 * 109.47346 * 64.77595 * 1 2 3 23 23 H 1.08999 * 109.47168 * 184.77221 * 1 2 3 24 24 H 1.08998 * 109.47084 * 240.00325 * 2 1 3 25 25 H 1.09004 * 109.47382 * 120.00473 * 2 1 3 26 26 H 0.97002 * 120.00140 * 180.02562 * 8 7 5 27 27 H 1.08998 * 109.45828 * 65.82678 * 14 13 3 28 28 H 1.08998 * 109.46513 * 305.85368 * 14 13 3 29 29 H 1.09004 * 109.49893 * 60.76505 * 15 14 13 30 30 H 1.08999 * 109.50075 * 180.87759 * 15 14 13 31 31 H 1.09007 * 109.52457 * 297.74355 * 16 15 14 32 32 H 1.09006 * 109.47382 * 185.00038 * 17 16 15 33 33 H 1.08996 * 109.46974 * 304.99350 * 17 16 15 34 34 H 1.09006 * 109.50301 * 182.40581 * 19 16 15 35 35 H 1.09002 * 109.49873 * 62.28961 * 19 16 15 36 36 H 1.09009 * 109.46398 * 294.18037 * 20 13 3 37 37 H 1.09001 * 109.46319 * 54.14646 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6305 1.9726 -0.8598 5 6 3.5449 1.4433 -0.0795 6 1 4.1271 1.8959 0.7094 7 6 4.1785 0.8660 -1.1595 8 7 3.4695 0.3143 -2.1200 9 14 6.0439 0.8663 -1.2578 10 1 6.6014 0.1437 -0.0864 11 1 6.4738 0.1900 -2.5080 12 1 6.5393 2.2663 -1.2574 13 7 1.6146 2.1123 1.2364 14 6 2.2763 1.5240 2.4079 15 6 1.7034 2.1446 3.6841 16 6 1.9277 3.6589 3.6546 17 6 1.3033 4.2926 4.8994 18 9 1.9762 3.8415 6.0399 19 6 1.2702 4.2401 2.3999 20 6 1.8557 3.5588 1.1610 21 1 -0.3633 0.5861 0.8441 22 1 -0.3634 0.4379 -0.9297 23 1 -0.3633 -1.0241 0.0855 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.9152 -0.0921 -2.8797 27 1 3.3471 1.7211 2.3572 28 1 2.1054 0.4475 2.4192 29 1 0.6351 1.9360 3.7423 30 1 2.2057 1.7191 4.5529 31 1 2.9973 3.8685 3.6358 32 1 1.3850 5.3776 4.8347 33 1 0.2523 4.0106 4.9623 34 1 1.4630 5.3118 2.3512 35 1 0.1951 4.0645 2.4380 36 1 2.9285 3.7464 1.1161 37 1 1.3793 3.9602 0.2665 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701655943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:07 Heat of formation + Delta-G solvation = -71.337130 kcal Electronic energy + Delta-G solvation = -17036.728154 eV Core-core repulsion = 14341.293753 eV Total energy + Delta-G solvation = -2695.434400 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.47766 -38.54495 -35.08320 -32.18579 -31.02400 -30.17618 -27.47079 -25.57965 -23.02451 -22.62946 -21.47427 -19.58331 -18.94430 -16.44379 -15.71255 -15.58111 -15.45683 -14.81958 -14.27232 -13.94433 -13.46337 -13.19646 -12.78799 -12.65884 -12.39642 -11.75337 -11.55936 -11.20757 -11.13051 -11.06279 -10.81418 -10.72229 -10.54180 -10.39408 -10.08500 -10.00708 -9.69999 -9.62012 -9.24506 -9.04760 -8.35536 -7.09012 -5.98302 -4.11698 3.27542 3.32873 3.35545 4.39479 4.71871 4.84101 4.99871 5.07342 5.15652 5.26244 5.50245 5.70433 5.82346 5.88975 6.06759 6.14687 6.24023 6.32132 6.38248 6.45820 6.50342 6.56176 6.66788 6.72683 6.79298 6.92205 7.14642 7.20413 7.39312 7.62263 7.78198 8.00447 8.17486 8.34929 8.50146 8.98670 9.55818 11.00790 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.028064 B = 0.008025 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.482604 B = 3488.447620 C = 4007.901327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.544 4.544 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.534 5.534 14 C 0.063 3.937 15 C -0.111 4.111 16 C -0.119 4.119 17 C 0.066 3.934 18 F -0.223 7.223 19 C -0.108 4.108 20 C 0.064 3.936 21 H 0.050 0.950 22 H 0.037 0.963 23 H 0.024 0.976 24 H 0.091 0.909 25 H 0.032 0.968 26 H 0.261 0.739 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.668 5.486 8.843 11.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.583 4.583 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.258 5.258 14 C -0.065 4.065 15 C -0.149 4.149 16 C -0.138 4.138 17 C 0.011 3.989 18 F -0.204 7.204 19 C -0.146 4.146 20 C -0.064 4.064 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.043 0.957 24 H 0.109 0.891 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.145 5.303 8.727 11.435 hybrid contribution 2.060 0.075 -0.215 2.073 sum -3.085 5.378 8.512 10.531 Atomic orbital electron populations 1.21719 0.98902 0.98471 1.00557 1.21585 0.92190 0.99189 1.01879 1.19250 0.92711 0.91123 0.86140 0.94530 1.21720 0.92816 1.37658 1.06067 0.92617 1.24907 0.97847 0.95064 0.95583 1.69862 1.35004 1.37792 1.09759 0.86755 0.86300 0.78172 0.77357 1.20339 1.21230 1.20425 1.62390 1.57225 1.01736 1.04450 1.21872 0.96599 0.98881 0.89180 1.21677 1.01446 0.93466 0.98351 1.21804 1.00879 0.97201 0.93957 1.22112 0.96049 0.98863 0.81832 1.92734 1.82939 1.91342 1.53388 1.21577 1.00494 0.98339 0.94154 1.21799 0.98617 0.90080 0.95949 0.93081 0.94403 0.95683 0.89096 0.94926 0.92852 0.94471 0.91154 0.91789 0.92285 0.90643 0.91336 0.90989 0.92410 0.91482 0.94768 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.85 37.16 0.37 -2.45 16 2 C -0.11 -2.59 5.14 -26.73 -0.14 -2.73 16 3 C 0.21 5.19 1.72 -68.86 -0.12 5.07 16 4 H 0.04 0.99 7.97 -51.93 -0.41 0.57 16 5 C -0.54 -14.39 7.24 -34.44 -0.25 -14.64 16 6 H 0.06 1.49 5.84 -52.49 -0.31 1.18 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -24.78 11.30 55.43 0.63 -24.16 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.53 -10.95 3.89 -228.08 -0.89 -11.83 16 14 C 0.06 1.23 4.77 -3.83 -0.02 1.21 16 15 C -0.11 -1.76 5.27 -26.65 -0.14 -1.90 16 16 C -0.12 -1.70 2.56 -90.50 -0.23 -1.93 16 17 C 0.07 0.79 6.91 37.16 0.26 1.05 16 18 F -0.22 -3.18 17.09 2.25 0.04 -3.14 16 19 C -0.11 -1.55 5.38 -26.65 -0.14 -1.69 16 20 C 0.06 1.20 5.20 -3.84 -0.02 1.18 16 21 H 0.05 1.00 7.56 -51.93 -0.39 0.60 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.09 2.40 5.99 -51.93 -0.31 2.09 16 25 H 0.03 0.76 6.33 -51.93 -0.33 0.43 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.04 0.80 6.33 -51.93 -0.33 0.47 16 28 H 0.07 1.42 6.20 -51.93 -0.32 1.10 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 31 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.03 0.70 7.36 -51.92 -0.38 0.31 16 37 H 0.06 1.21 8.00 -51.93 -0.42 0.79 16 LS Contribution 285.50 15.07 4.30 4.30 Total: -1.00 -27.23 285.50 -7.61 -34.84 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.13 Total: -1.02 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -0.53 Total: -15.07 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.26 Total: -35.99 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.04 Total: -3.14 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.23 -7.61 -34.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701655943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.498 kcal (2) G-P(sol) polarization free energy of solvation -27.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds