Wall clock time and date at job start Sun Mar 29 2020 21:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47258 * 2 1 4 4 H 1.08997 * 109.47117 * 303.20844 * 3 2 1 5 5 C 1.50702 * 109.47524 * 183.20731 * 3 2 1 6 6 H 1.07993 * 120.00418 * 240.00503 * 5 3 2 7 7 C 1.37882 * 119.99616 * 60.00217 * 5 3 2 8 8 N 1.31510 * 120.00041 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99893 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47293 * 59.99485 * 9 7 5 11 11 H 1.48500 * 109.47053 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46897 * 299.99877 * 9 7 5 13 13 N 1.46906 * 109.47116 * 63.20819 * 3 2 1 14 14 C 1.46851 * 110.99565 * 66.78806 * 13 3 2 15 15 C 1.53040 * 109.51934 * 185.83766 * 14 13 3 16 16 C 1.53109 * 109.28106 * 300.82625 * 15 14 13 17 17 C 1.53001 * 109.52243 * 177.56147 * 16 15 14 18 18 F 1.39900 * 109.47460 * 64.99844 * 17 16 15 19 19 C 1.53120 * 109.16367 * 57.65242 * 16 15 14 20 20 C 1.46838 * 111.00206 * 190.99976 * 13 3 2 21 21 H 1.09000 * 109.47096 * 304.77589 * 1 2 3 22 22 H 1.09002 * 109.47346 * 64.77595 * 1 2 3 23 23 H 1.08999 * 109.47168 * 184.77221 * 1 2 3 24 24 H 1.08998 * 109.47084 * 240.00325 * 2 1 3 25 25 H 1.09004 * 109.47382 * 120.00473 * 2 1 3 26 26 H 0.97002 * 120.00140 * 180.02562 * 8 7 5 27 27 H 1.08998 * 109.45828 * 65.82678 * 14 13 3 28 28 H 1.08998 * 109.46513 * 305.85368 * 14 13 3 29 29 H 1.09004 * 109.49893 * 60.76505 * 15 14 13 30 30 H 1.08999 * 109.50075 * 180.87759 * 15 14 13 31 31 H 1.09007 * 109.52457 * 297.74355 * 16 15 14 32 32 H 1.09006 * 109.47382 * 185.00038 * 17 16 15 33 33 H 1.08996 * 109.46974 * 304.99350 * 17 16 15 34 34 H 1.09006 * 109.50301 * 182.40581 * 19 16 15 35 35 H 1.09002 * 109.49873 * 62.28961 * 19 16 15 36 36 H 1.09009 * 109.46398 * 294.18037 * 20 13 3 37 37 H 1.09001 * 109.46319 * 54.14646 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6305 1.9726 -0.8598 5 6 3.5449 1.4433 -0.0795 6 1 4.1271 1.8959 0.7094 7 6 4.1785 0.8660 -1.1595 8 7 3.4695 0.3143 -2.1200 9 14 6.0439 0.8663 -1.2578 10 1 6.6014 0.1437 -0.0864 11 1 6.4738 0.1900 -2.5080 12 1 6.5393 2.2663 -1.2574 13 7 1.6146 2.1123 1.2364 14 6 2.2763 1.5240 2.4079 15 6 1.7034 2.1446 3.6841 16 6 1.9277 3.6589 3.6546 17 6 1.3033 4.2926 4.8994 18 9 1.9762 3.8415 6.0399 19 6 1.2702 4.2401 2.3999 20 6 1.8557 3.5588 1.1610 21 1 -0.3633 0.5861 0.8441 22 1 -0.3634 0.4379 -0.9297 23 1 -0.3633 -1.0241 0.0855 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.9152 -0.0921 -2.8797 27 1 3.3471 1.7211 2.3572 28 1 2.1054 0.4475 2.4192 29 1 0.6351 1.9360 3.7423 30 1 2.2057 1.7191 4.5529 31 1 2.9973 3.8685 3.6358 32 1 1.3850 5.3776 4.8347 33 1 0.2523 4.0106 4.9623 34 1 1.4630 5.3118 2.3512 35 1 0.1951 4.0645 2.4380 36 1 2.9285 3.7464 1.1161 37 1 1.3793 3.9602 0.2665 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701655943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:06 Heat of formation + Delta-G solvation = -86.419188 kcal Electronic energy + Delta-G solvation = -17037.382161 eV Core-core repulsion = 14341.293753 eV Total energy + Delta-G solvation = -2696.088407 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.48558 -40.08323 -36.70812 -34.07523 -32.70525 -31.59608 -29.07617 -27.20933 -24.78673 -24.06677 -22.87937 -21.11109 -20.61996 -18.32472 -17.23499 -16.69838 -16.59192 -16.37378 -15.87447 -15.45459 -15.06685 -14.77183 -14.40365 -14.18154 -13.90278 -13.36894 -13.20282 -12.90187 -12.78481 -12.69892 -12.43545 -12.20824 -12.02633 -11.86578 -11.59296 -11.54419 -11.44046 -11.19462 -10.95789 -10.78966 -10.42802 -8.89619 -8.03551 -6.26421 1.35381 1.36421 1.43571 2.38275 3.13849 3.42379 3.68734 3.80023 3.87537 4.21818 4.37987 4.43631 4.55133 4.59626 4.66440 4.76796 4.77999 4.85162 4.92550 4.98219 5.04168 5.08638 5.14801 5.26509 5.29418 5.34228 5.44450 5.51704 5.54817 5.65810 5.80960 6.08691 6.21468 6.40550 6.72775 6.95964 7.44331 8.90656 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.028064 B = 0.008025 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.482604 B = 3488.447620 C = 4007.901327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.552 4.552 6 H 0.047 0.953 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.943 3.057 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.276 1.276 13 N -0.527 5.527 14 C 0.067 3.933 15 C -0.103 4.103 16 C -0.118 4.118 17 C 0.070 3.930 18 F -0.237 7.237 19 C -0.095 4.095 20 C 0.060 3.940 21 H 0.060 0.940 22 H 0.032 0.968 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.028 0.972 26 H 0.262 0.738 27 H 0.010 0.990 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.009 0.991 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.469 6.477 10.385 13.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C 0.111 3.889 4 H 0.022 0.978 5 C -0.591 4.591 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.769 3.231 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.201 1.201 13 N -0.251 5.251 14 C -0.062 4.062 15 C -0.141 4.141 16 C -0.137 4.137 17 C 0.015 3.985 18 F -0.218 7.218 19 C -0.133 4.133 20 C -0.068 4.068 21 H 0.079 0.921 22 H 0.052 0.948 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.027 0.973 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.949 6.302 10.284 13.449 hybrid contribution 2.316 -0.229 -0.713 2.434 sum -3.633 6.073 9.571 11.903 Atomic orbital electron populations 1.21573 0.96096 0.99967 1.00717 1.21427 0.94655 0.98200 1.00103 1.19034 0.91399 0.91572 0.86849 0.97833 1.21966 0.94226 1.37209 1.05747 0.93495 1.25594 1.01762 0.95000 0.95462 1.69986 1.36380 1.38430 1.10139 0.85849 0.81668 0.78157 0.77386 1.20107 1.20689 1.20116 1.62369 1.56712 1.02751 1.03248 1.21850 0.95186 0.98544 0.90608 1.21600 1.01866 0.94623 0.96024 1.21764 1.00403 0.96086 0.95467 1.22189 0.96484 1.00157 0.79654 1.92712 1.83395 1.91638 1.54065 1.21489 1.00841 0.99359 0.91596 1.21902 0.97407 0.89136 0.98379 0.92072 0.94836 0.93634 0.92155 0.95290 0.92908 0.97216 0.92426 0.90512 0.91686 0.92103 0.88634 0.88887 0.89628 0.90019 0.97314 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 9.85 71.98 0.71 -4.30 16 2 C -0.11 -5.05 5.14 30.59 0.16 -4.89 16 3 C 0.22 10.91 1.72 44.17 0.08 10.99 16 4 H 0.00 0.21 7.97 -2.39 -0.02 0.19 16 5 C -0.55 -30.12 7.24 25.60 0.19 -29.93 16 6 H 0.05 2.59 5.84 -2.91 -0.02 2.58 16 7 C 0.02 1.20 5.30 84.66 0.45 1.65 16 8 N -0.91 -52.22 11.30 21.45 0.24 -51.98 16 9 Si 0.94 44.00 29.54 68.60 2.03 46.02 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 13 N -0.53 -21.67 3.89 -875.51 -3.41 -25.07 16 14 C 0.07 2.59 4.77 86.33 0.41 3.00 16 15 C -0.10 -3.07 5.27 30.64 0.16 -2.90 16 16 C -0.12 -3.06 2.56 -10.72 -0.03 -3.09 16 17 C 0.07 1.38 6.91 71.98 0.50 1.88 16 18 F -0.24 -6.06 17.09 44.97 0.77 -5.29 16 19 C -0.10 -2.47 5.38 30.65 0.16 -2.30 16 20 C 0.06 2.23 5.20 86.33 0.45 2.67 16 21 H 0.06 2.29 7.56 -2.39 -0.02 2.27 16 22 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.06 3.27 5.99 -2.39 -0.01 3.26 16 25 H 0.03 1.37 6.33 -2.39 -0.02 1.35 16 26 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.01 0.42 6.33 -2.39 -0.02 0.41 16 28 H 0.06 2.35 6.20 -2.39 -0.01 2.34 16 29 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.06 1.86 8.00 -2.39 -0.02 1.84 16 31 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.01 0.36 7.36 -2.38 -0.02 0.34 16 37 H 0.06 2.18 8.00 -2.39 -0.02 2.16 16 Total: -1.00 -59.81 285.50 3.89 -55.92 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 1.03 Total: 7.63 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 3.23 Total: -27.23 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -3.16 Total: -77.05 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.77 Total: -5.29 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -59.81 3.89 -55.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701655943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.501 kcal (2) G-P(sol) polarization free energy of solvation -59.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds