Wall clock time and date at job start Sun Mar 29 2020 21:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.47213 * 2 1 4 4 H 1.08995 * 109.46719 * 177.44511 * 3 2 1 5 5 C 1.50699 * 109.46964 * 297.44706 * 3 2 1 6 6 H 1.08000 * 119.99674 * 120.00343 * 5 3 2 7 7 C 1.37875 * 120.00231 * 299.99662 * 5 3 2 8 8 N 1.31518 * 119.99602 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00169 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47177 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46738 * 120.00096 * 9 7 5 12 12 H 1.48495 * 109.47138 * 240.00445 * 9 7 5 13 13 N 1.46906 * 109.46994 * 57.44735 * 3 2 1 14 14 C 1.46849 * 110.99611 * 54.37339 * 13 3 2 15 15 C 1.53041 * 109.51620 * 185.83784 * 14 13 3 16 16 C 1.53113 * 109.28209 * 300.82007 * 15 14 13 17 17 C 1.53001 * 109.52645 * 177.56115 * 16 15 14 18 18 F 1.39904 * 109.47404 * 180.31967 * 17 16 15 19 19 C 1.53124 * 109.16011 * 57.65819 * 16 15 14 20 20 C 1.46848 * 110.99842 * 178.58576 * 13 3 2 21 21 H 1.08998 * 109.46907 * 175.27765 * 1 2 3 22 22 H 1.08999 * 109.46692 * 55.27861 * 1 2 3 23 23 H 1.09001 * 109.47079 * 295.28091 * 1 2 3 24 24 H 1.08998 * 109.46618 * 119.99989 * 2 1 3 25 25 H 1.08996 * 109.46670 * 239.99882 * 2 1 3 26 26 H 0.97001 * 119.99372 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.46388 * 305.85259 * 14 13 3 28 28 H 1.08997 * 109.46098 * 65.82636 * 14 13 3 29 29 H 1.09005 * 109.50075 * 180.87894 * 15 14 13 30 30 H 1.08998 * 109.50492 * 60.76270 * 15 14 13 31 31 H 1.09000 * 109.52427 * 297.75791 * 16 15 14 32 32 H 1.09003 * 109.46945 * 300.31712 * 17 16 15 33 33 H 1.08992 * 109.46864 * 60.31814 * 17 16 15 34 34 H 1.08997 * 109.50835 * 182.40958 * 19 16 15 35 35 H 1.08998 * 109.50580 * 62.28161 * 19 16 15 36 36 H 1.08998 * 109.45974 * 294.17522 * 20 13 3 37 37 H 1.08998 * 109.45941 * 54.14305 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1291 1.4428 0.0458 5 6 1.5901 2.1344 -1.2609 6 1 0.9659 3.0137 -1.2010 7 6 1.9754 1.6449 -2.4909 8 7 2.7352 0.5739 -2.5638 9 14 1.4170 2.5022 -4.0539 10 1 0.5761 3.6745 -3.7021 11 1 2.6048 2.9575 -4.8200 12 1 0.6266 1.5562 -4.8819 13 7 1.5007 2.1526 1.1675 14 6 1.8071 1.4317 2.4096 15 6 1.1089 2.1191 3.5852 16 6 1.5915 3.5690 3.6822 17 6 0.8521 4.2792 4.8179 18 9 1.2886 5.6058 4.9009 19 6 1.3044 4.2839 2.3589 20 6 1.9969 3.5338 1.2188 21 1 -0.3633 -1.0242 -0.0846 22 1 -0.3633 0.5854 -0.8447 23 1 -0.3633 0.4389 0.9292 24 1 1.8933 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.0059 0.2294 -3.4292 27 1 1.4549 0.4033 2.3290 28 1 2.8844 1.4346 2.5749 29 1 1.3491 1.5930 4.5092 30 1 0.0305 2.1044 3.4272 31 1 2.6635 3.5837 3.8790 32 1 -0.2198 4.2611 4.6208 33 1 1.0571 3.7697 5.7594 34 1 1.6843 5.3043 2.4066 35 1 0.2291 4.3031 2.1815 36 1 3.0733 3.5268 1.3897 37 1 1.7826 4.0319 0.2733 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701655949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:09 Heat of formation + Delta-G solvation = -67.785767 kcal Electronic energy + Delta-G solvation = -17017.835804 eV Core-core repulsion = 14322.555402 eV Total energy + Delta-G solvation = -2695.280402 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.50740 -38.58804 -35.16297 -32.28500 -31.02649 -30.01733 -27.43262 -25.58214 -23.48327 -22.30812 -21.63940 -19.62803 -18.82077 -16.13095 -15.87505 -15.70921 -15.57470 -14.74246 -14.17672 -14.04743 -13.54914 -13.45665 -12.80911 -12.58845 -12.23798 -11.81338 -11.79366 -11.36206 -11.07330 -10.93996 -10.74169 -10.70106 -10.42918 -10.41411 -10.13369 -9.92658 -9.78761 -9.56554 -9.32022 -8.76293 -8.38027 -7.10508 -5.99316 -4.02686 3.30068 3.38405 3.42559 4.41809 4.66830 4.80572 4.95372 4.99136 5.11769 5.32629 5.45679 5.63780 5.76832 5.80066 5.97185 6.07263 6.18380 6.27414 6.31877 6.40122 6.50787 6.56053 6.60664 6.72710 6.78863 6.83734 7.11672 7.33830 7.43599 7.67424 7.77683 7.85754 8.23991 8.36848 8.63728 9.03533 9.61477 11.07113 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.035294 B = 0.007345 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.151896 B = 3811.381695 C = 4302.725663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C 0.216 3.784 4 H -0.004 1.004 5 C -0.494 4.494 6 H 0.063 0.937 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.528 5.528 14 C 0.051 3.949 15 C -0.106 4.106 16 C -0.120 4.120 17 C 0.067 3.933 18 F -0.222 7.222 19 C -0.111 4.111 20 C 0.065 3.935 21 H 0.015 0.985 22 H 0.059 0.941 23 H 0.040 0.960 24 H 0.014 0.986 25 H 0.092 0.908 26 H 0.259 0.741 27 H 0.077 0.923 28 H 0.017 0.983 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.016 0.984 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.986 3.079 11.207 11.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.152 4.152 3 C 0.110 3.890 4 H 0.013 0.987 5 C -0.532 4.532 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.253 5.253 14 C -0.077 4.077 15 C -0.144 4.144 16 C -0.139 4.139 17 C 0.012 3.988 18 F -0.203 7.203 19 C -0.148 4.148 20 C -0.063 4.063 21 H 0.034 0.966 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.032 0.968 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.035 0.965 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.397 3.011 11.012 11.911 hybrid contribution 0.732 0.353 -0.798 1.139 sum -2.665 3.364 10.214 11.079 Atomic orbital electron populations 1.21478 0.97284 0.97608 1.01471 1.21607 0.95132 0.98287 1.00161 1.19256 0.92319 0.90689 0.86692 0.98675 1.21108 1.30665 1.11830 0.89645 0.91932 1.24909 0.95243 0.95108 0.98963 1.69890 1.36363 1.22558 1.24487 0.86527 0.78377 0.79637 0.83411 1.19749 1.21234 1.21081 1.62042 1.59942 1.01265 1.02090 1.22054 0.96589 0.98557 0.90519 1.21545 1.01321 0.93610 0.97961 1.21823 1.00394 0.96347 0.95364 1.22094 0.99499 0.77530 0.99703 1.92735 1.91744 1.38235 1.97615 1.21649 1.01656 0.98093 0.93448 1.21904 0.95239 0.90792 0.98371 0.96580 0.92194 0.94130 0.96778 0.88929 0.93108 0.90460 0.96450 0.92392 0.91121 0.90855 0.90885 0.91346 0.92093 0.91382 0.96544 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.41 37.16 0.35 -2.27 16 2 C -0.11 -2.68 4.95 -26.73 -0.13 -2.81 16 3 C 0.22 5.32 1.76 -68.86 -0.12 5.20 16 4 H 0.00 -0.12 8.14 -51.93 -0.42 -0.54 16 5 C -0.49 -13.13 6.64 -34.44 -0.23 -13.36 16 6 H 0.06 1.68 6.81 -52.49 -0.36 1.32 16 7 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 8 N -0.89 -25.16 11.30 55.43 0.63 -24.53 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.53 -10.96 3.78 -228.08 -0.86 -11.82 16 14 C 0.05 0.91 4.83 -3.83 -0.02 0.89 16 15 C -0.11 -1.49 5.38 -26.65 -0.14 -1.63 16 16 C -0.12 -1.66 2.58 -90.50 -0.23 -1.89 16 17 C 0.07 0.77 6.97 37.16 0.26 1.03 16 18 F -0.22 -3.10 16.89 2.25 0.04 -3.06 16 19 C -0.11 -1.75 5.22 -26.65 -0.14 -1.89 16 20 C 0.07 1.27 5.27 -3.83 -0.02 1.25 16 21 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 22 H 0.06 1.41 7.14 -51.93 -0.37 1.04 16 23 H 0.04 0.82 7.18 -51.93 -0.37 0.45 16 24 H 0.01 0.30 6.36 -51.93 -0.33 -0.03 16 25 H 0.09 2.46 6.01 -51.93 -0.31 2.14 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.08 1.39 5.59 -51.93 -0.29 1.10 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.92 7.88 -51.93 -0.41 0.51 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 1.81 6.39 -51.93 -0.33 1.48 16 LS Contribution 284.23 15.07 4.28 4.28 Total: -1.00 -27.64 284.23 -7.59 -35.23 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.14 Total: -2.25 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -0.52 Total: -13.98 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.23 Total: -36.35 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.04 Total: -3.06 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.64 -7.59 -35.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701655949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.556 kcal (2) G-P(sol) polarization free energy of solvation -27.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds