Wall clock time and date at job start Sun Mar 29 2020 21:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.47213 * 2 1 4 4 H 1.08995 * 109.46719 * 177.44511 * 3 2 1 5 5 C 1.50699 * 109.46964 * 297.44706 * 3 2 1 6 6 H 1.08000 * 119.99674 * 120.00343 * 5 3 2 7 7 C 1.37875 * 120.00231 * 299.99662 * 5 3 2 8 8 N 1.31518 * 119.99602 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00169 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47177 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46738 * 120.00096 * 9 7 5 12 12 H 1.48495 * 109.47138 * 240.00445 * 9 7 5 13 13 N 1.46906 * 109.46994 * 57.44735 * 3 2 1 14 14 C 1.46849 * 110.99611 * 54.37339 * 13 3 2 15 15 C 1.53041 * 109.51620 * 185.83784 * 14 13 3 16 16 C 1.53113 * 109.28209 * 300.82007 * 15 14 13 17 17 C 1.53001 * 109.52645 * 177.56115 * 16 15 14 18 18 F 1.39904 * 109.47404 * 180.31967 * 17 16 15 19 19 C 1.53124 * 109.16011 * 57.65819 * 16 15 14 20 20 C 1.46848 * 110.99842 * 178.58576 * 13 3 2 21 21 H 1.08998 * 109.46907 * 175.27765 * 1 2 3 22 22 H 1.08999 * 109.46692 * 55.27861 * 1 2 3 23 23 H 1.09001 * 109.47079 * 295.28091 * 1 2 3 24 24 H 1.08998 * 109.46618 * 119.99989 * 2 1 3 25 25 H 1.08996 * 109.46670 * 239.99882 * 2 1 3 26 26 H 0.97001 * 119.99372 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.46388 * 305.85259 * 14 13 3 28 28 H 1.08997 * 109.46098 * 65.82636 * 14 13 3 29 29 H 1.09005 * 109.50075 * 180.87894 * 15 14 13 30 30 H 1.08998 * 109.50492 * 60.76270 * 15 14 13 31 31 H 1.09000 * 109.52427 * 297.75791 * 16 15 14 32 32 H 1.09003 * 109.46945 * 300.31712 * 17 16 15 33 33 H 1.08992 * 109.46864 * 60.31814 * 17 16 15 34 34 H 1.08997 * 109.50835 * 182.40958 * 19 16 15 35 35 H 1.08998 * 109.50580 * 62.28161 * 19 16 15 36 36 H 1.08998 * 109.45974 * 294.17522 * 20 13 3 37 37 H 1.08998 * 109.45941 * 54.14305 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1291 1.4428 0.0458 5 6 1.5901 2.1344 -1.2609 6 1 0.9659 3.0137 -1.2010 7 6 1.9754 1.6449 -2.4909 8 7 2.7352 0.5739 -2.5638 9 14 1.4170 2.5022 -4.0539 10 1 0.5761 3.6745 -3.7021 11 1 2.6048 2.9575 -4.8200 12 1 0.6266 1.5562 -4.8819 13 7 1.5007 2.1526 1.1675 14 6 1.8071 1.4317 2.4096 15 6 1.1089 2.1191 3.5852 16 6 1.5915 3.5690 3.6822 17 6 0.8521 4.2792 4.8179 18 9 1.2886 5.6058 4.9009 19 6 1.3044 4.2839 2.3589 20 6 1.9969 3.5338 1.2188 21 1 -0.3633 -1.0242 -0.0846 22 1 -0.3633 0.5854 -0.8447 23 1 -0.3633 0.4389 0.9292 24 1 1.8933 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.0059 0.2294 -3.4292 27 1 1.4549 0.4033 2.3290 28 1 2.8844 1.4346 2.5749 29 1 1.3491 1.5930 4.5092 30 1 0.0305 2.1044 3.4272 31 1 2.6635 3.5837 3.8790 32 1 -0.2198 4.2611 4.6208 33 1 1.0571 3.7697 5.7594 34 1 1.6843 5.3043 2.4066 35 1 0.2291 4.3031 2.1815 36 1 3.0733 3.5268 1.3897 37 1 1.7826 4.0319 0.2733 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701655949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:09 Heat of formation + Delta-G solvation = -83.273590 kcal Electronic energy + Delta-G solvation = -17018.507406 eV Core-core repulsion = 14322.555402 eV Total energy + Delta-G solvation = -2695.952004 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.48940 -40.10056 -36.79674 -34.11723 -32.68833 -31.49675 -29.01645 -27.22423 -25.22153 -23.76246 -23.04668 -21.12638 -20.43867 -18.13736 -17.38292 -16.80797 -16.58563 -16.30020 -15.74576 -15.51087 -15.25063 -14.97528 -14.34145 -14.12612 -13.78359 -13.62899 -13.23423 -12.87167 -12.78786 -12.52959 -12.37666 -12.12012 -12.02481 -11.84134 -11.69021 -11.52386 -11.36661 -11.27833 -10.87050 -10.69809 -10.42314 -8.85891 -8.08142 -6.17922 1.39752 1.42415 1.53243 2.43014 3.19358 3.37734 3.65610 3.78438 3.85276 4.21746 4.36014 4.38767 4.46927 4.57363 4.61165 4.72782 4.74825 4.83047 4.86234 4.94777 4.97108 5.09743 5.15287 5.22871 5.28146 5.29766 5.41920 5.50965 5.56420 5.74888 5.81122 5.91684 6.34739 6.46640 6.81812 6.96113 7.50027 8.97489 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.035294 B = 0.007345 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.151896 B = 3811.381695 C = 4302.725663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.109 4.109 3 C 0.221 3.779 4 H -0.050 1.050 5 C -0.501 4.501 6 H 0.055 0.945 7 C 0.012 3.988 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.280 1.280 13 N -0.528 5.528 14 C 0.047 3.953 15 C -0.096 4.096 16 C -0.118 4.118 17 C 0.069 3.931 18 F -0.236 7.236 19 C -0.102 4.102 20 C 0.066 3.934 21 H 0.036 0.964 22 H 0.035 0.965 23 H 0.055 0.945 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.259 0.741 27 H 0.076 0.924 28 H 0.007 0.993 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.002 0.998 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.434 3.397 12.911 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C 0.114 3.886 4 H -0.032 1.032 5 C -0.540 4.540 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.206 1.206 13 N -0.253 5.253 14 C -0.082 4.082 15 C -0.134 4.134 16 C -0.137 4.137 17 C 0.015 3.985 18 F -0.218 7.218 19 C -0.140 4.140 20 C -0.063 4.063 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.074 0.926 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.025 0.975 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.020 0.980 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.853 3.339 12.735 14.032 hybrid contribution 1.238 0.245 -1.310 1.819 sum -3.615 3.583 11.425 12.508 Atomic orbital electron populations 1.21330 0.95421 0.98626 1.01150 1.21471 0.96644 0.97243 0.99373 1.19049 0.89671 0.91869 0.87990 1.03250 1.21307 1.30263 1.11599 0.90811 0.92666 1.25627 0.95411 0.95735 1.01828 1.70023 1.37347 1.23721 1.25050 0.85594 0.77947 0.78764 0.79892 1.19224 1.21061 1.20604 1.62019 1.59327 1.01688 1.02273 1.22192 0.96600 0.98796 0.90563 1.21489 1.01112 0.93453 0.97324 1.21783 1.00587 0.96343 0.94972 1.22185 0.99894 0.76573 0.99878 1.92713 1.91971 1.39444 1.97647 1.21557 1.01178 0.98040 0.93200 1.21887 0.94900 0.90520 0.98966 0.94488 0.94600 0.92565 0.95146 0.92104 0.93144 0.90561 0.97506 0.89034 0.90381 0.91421 0.89258 0.88339 0.91517 0.91089 0.97983 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.56 9.41 71.99 0.68 -3.89 16 2 C -0.11 -5.19 4.95 30.60 0.15 -5.04 16 3 C 0.22 11.21 1.76 44.17 0.08 11.29 16 4 H -0.05 -2.92 8.14 -2.39 -0.02 -2.94 16 5 C -0.50 -27.38 6.64 25.60 0.17 -27.21 16 6 H 0.06 3.04 6.81 -2.91 -0.02 3.02 16 7 C 0.01 0.67 5.30 84.65 0.45 1.12 16 8 N -0.92 -53.32 11.30 21.45 0.24 -53.07 16 9 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.53 -21.98 3.78 -875.50 -3.31 -25.29 16 14 C 0.05 1.59 4.83 86.33 0.42 2.01 16 15 C -0.10 -2.35 5.38 30.65 0.16 -2.19 16 16 C -0.12 -2.91 2.58 -10.71 -0.03 -2.94 16 17 C 0.07 1.33 6.97 71.98 0.50 1.83 16 18 F -0.24 -5.91 16.89 44.97 0.76 -5.15 16 19 C -0.10 -3.08 5.22 30.65 0.16 -2.92 16 20 C 0.07 2.60 5.27 86.33 0.45 3.05 16 21 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.03 1.66 7.14 -2.39 -0.02 1.65 16 23 H 0.06 2.17 7.18 -2.39 -0.02 2.15 16 24 H 0.03 1.31 6.36 -2.39 -0.02 1.30 16 25 H 0.06 3.31 6.01 -2.39 -0.01 3.29 16 26 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 27 H 0.08 2.61 5.59 -2.39 -0.01 2.60 16 28 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.94 7.88 -2.39 -0.02 1.92 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.06 2.62 6.39 -2.39 -0.02 2.60 16 Total: -1.00 -61.01 284.23 3.94 -57.07 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.02 Total: 5.27 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 3.20 Total: -24.89 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -3.06 Total: -78.36 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.76 Total: -5.15 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -61.01 3.94 -57.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701655949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.203 kcal (2) G-P(sol) polarization free energy of solvation -61.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds