Wall clock time and date at job start Sun Mar 29 2020 21:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99882 * 2 1 4 4 C 1.53000 * 109.47151 * 293.95749 * 3 2 1 5 5 C 1.53003 * 109.47279 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47297 * 180.02562 * 5 4 3 7 7 H 1.07996 * 120.00107 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00070 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99721 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00155 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47171 * 59.99641 * 10 8 6 12 12 H 1.48500 * 109.47284 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47063 * 300.00120 * 10 8 6 14 14 C 1.46894 * 111.00188 * 123.95558 * 2 1 3 15 15 H 1.09001 * 110.45514 * 297.19239 * 14 2 1 16 16 C 1.54483 * 110.50923 * 174.59347 * 14 2 1 17 17 O 1.44428 * 104.89902 * 217.32264 * 16 14 2 18 18 C 1.44688 * 105.13885 * 40.49479 * 17 16 14 19 19 C 1.54477 * 104.83958 * 319.51776 * 18 17 16 20 20 H 1.09000 * 110.62726 * 142.68118 * 19 18 17 21 21 O 1.42897 * 110.51241 * 265.33386 * 19 18 17 22 22 H 1.09007 * 109.47055 * 296.04456 * 1 2 3 23 23 H 1.09002 * 109.47409 * 56.04419 * 1 2 3 24 24 H 1.09003 * 109.47033 * 176.04776 * 1 2 3 25 25 H 1.09000 * 109.47509 * 53.95431 * 3 2 1 26 26 H 1.09000 * 109.47155 * 173.95847 * 3 2 1 27 27 H 1.09000 * 109.47435 * 299.99710 * 4 3 2 28 28 H 1.08998 * 109.47489 * 59.99808 * 4 3 2 29 29 H 1.09004 * 109.46658 * 299.99665 * 5 4 3 30 30 H 1.08998 * 109.47096 * 59.99470 * 5 4 3 31 31 H 0.97000 * 119.99974 * 179.97438 * 9 8 6 32 32 H 1.09002 * 110.37322 * 336.20778 * 16 14 2 33 33 H 1.08999 * 110.37312 * 98.43455 * 16 14 2 34 34 H 1.08996 * 110.35300 * 200.67684 * 18 17 16 35 35 H 1.08999 * 110.35366 * 78.36394 * 18 17 16 36 36 H 0.96692 * 114.00256 * 294.64140 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1802 3.4857 -1.3185 6 6 1.8210 4.1616 -2.6166 7 1 1.2581 3.6260 -3.3666 8 6 2.2112 5.4639 -2.8468 9 7 2.8963 6.1163 -1.9333 10 14 1.7667 6.3015 -4.4562 11 1 0.2895 6.3381 -4.6036 12 1 2.2992 7.6877 -4.4564 13 1 2.3584 5.5442 -5.5883 14 6 1.9955 -0.7660 1.1375 15 1 1.6963 -0.3045 2.0786 16 6 3.5342 -0.8729 1.0522 17 8 3.8409 -2.2026 1.5255 18 6 2.8173 -3.0518 0.9557 19 6 1.5131 -2.2324 1.0725 20 1 0.8819 -2.3883 0.1976 21 8 0.8080 -2.5808 2.2656 22 1 -0.3633 0.4512 0.9234 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0708 25 1 1.5611 1.9274 0.8309 26 1 3.0797 1.3445 0.1082 27 1 2.0657 1.5017 -2.1492 28 1 0.5471 2.0845 -1.4265 29 1 1.7461 4.0418 -0.4875 30 1 3.2644 3.4583 -1.2105 31 1 3.1712 7.0323 -2.0954 32 1 3.8666 -0.7511 0.0213 33 1 4.0026 -0.1250 1.6920 34 1 2.7350 -3.9790 1.5228 35 1 3.0397 -3.2641 -0.0901 36 1 0.4824 -3.4912 2.2783 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708746674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:54 Heat of formation + Delta-G solvation = -96.458231 kcal Electronic energy + Delta-G solvation = -16327.078358 eV Core-core repulsion = 13618.181835 eV Total energy + Delta-G solvation = -2708.896523 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.04635 -36.95027 -36.22106 -33.66430 -31.55937 -29.61202 -28.87904 -27.03089 -24.82466 -23.23846 -22.06722 -20.21162 -19.90871 -17.67192 -16.62887 -16.41958 -16.19352 -15.61395 -14.57143 -14.48006 -14.24167 -13.99429 -13.52103 -13.05718 -12.97070 -12.34607 -12.26507 -11.81115 -11.62955 -11.37710 -11.28334 -10.95935 -10.76990 -10.55127 -10.50158 -10.30643 -9.73658 -9.62107 -9.33786 -9.07388 -8.33563 -8.21958 -5.98853 -4.01111 3.34188 3.38494 3.40923 3.60868 3.84464 4.26674 4.44778 4.50159 4.62590 4.89797 5.20242 5.31536 5.35964 5.37386 5.42084 5.50608 5.58690 5.72386 5.77476 5.83168 5.97801 6.07721 6.27208 6.50784 6.65759 6.74791 7.05874 7.22734 7.28001 7.41865 7.68346 7.82995 8.01148 8.44188 9.05759 9.62840 11.12580 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.052842 B = 0.004680 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.758121 B = 5981.476038 C = 6209.958597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.533 5.533 3 C 0.053 3.947 4 C -0.104 4.104 5 C 0.022 3.978 6 C -0.519 4.519 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.055 3.945 15 H 0.065 0.935 16 C 0.053 3.947 17 O -0.372 6.372 18 C 0.020 3.980 19 C 0.073 3.927 20 H 0.084 0.916 21 O -0.559 6.559 22 H 0.025 0.975 23 H 0.079 0.921 24 H 0.061 0.939 25 H 0.032 0.968 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.014 0.986 30 H 0.016 0.984 31 H 0.261 0.739 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.940 -17.337 5.881 18.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.259 5.259 3 C -0.074 4.074 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.054 4.054 15 H 0.083 0.917 16 C -0.025 4.025 17 O -0.290 6.290 18 C -0.058 4.058 19 C 0.014 3.986 20 H 0.101 0.899 21 O -0.365 6.365 22 H 0.044 0.956 23 H 0.098 0.902 24 H 0.080 0.920 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -2.367 -16.839 5.792 17.964 hybrid contribution -0.816 0.463 -0.400 1.020 sum -3.183 -16.376 5.393 17.532 Atomic orbital electron populations 1.22454 0.87317 1.01536 1.01346 1.62200 1.08177 1.15483 1.40016 1.22382 0.99740 0.85680 0.99612 1.21663 1.00168 0.98243 0.94130 1.19073 0.96261 0.89222 0.97035 1.21200 1.34886 0.97620 1.02077 0.92739 1.25023 0.95211 0.97493 0.96726 1.69954 1.38252 1.11351 1.34017 0.86656 0.78737 0.78503 0.84089 1.20281 1.21307 1.20228 1.22915 0.95374 0.92757 0.94340 0.91715 1.23528 0.92967 0.84956 1.01002 1.89189 1.49648 1.18107 1.72035 1.24139 0.87633 0.94784 0.99227 1.23216 0.92910 0.94545 0.87965 0.89874 1.86557 1.75174 1.34585 1.40163 0.95597 0.90210 0.92026 0.94951 0.90987 0.92531 0.93309 0.96801 0.96567 0.92968 0.90378 0.88658 0.88983 0.91154 0.77493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.08 60.07 0.55 0.84 16 2 N -0.53 -7.91 4.56 -232.99 -1.06 -8.97 16 3 C 0.05 0.91 4.82 -3.82 -0.02 0.89 16 4 C -0.10 -2.14 5.08 -26.73 -0.14 -2.27 16 5 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 6 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 7 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 10 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.06 0.75 2.64 -66.15 -0.17 0.58 16 15 H 0.06 0.97 8.00 -51.93 -0.42 0.56 16 16 C 0.05 0.70 5.92 37.94 0.22 0.93 16 17 O -0.37 -5.10 11.67 -35.23 -0.41 -5.51 16 18 C 0.02 0.21 7.38 37.93 0.28 0.49 16 19 C 0.07 0.81 3.64 -25.17 -0.09 0.72 16 20 H 0.08 0.86 6.46 -51.93 -0.34 0.52 16 21 O -0.56 -6.03 13.30 -35.23 -0.47 -6.50 16 22 H 0.03 0.36 8.14 -51.92 -0.42 -0.06 16 23 H 0.08 1.14 6.30 -51.93 -0.33 0.81 16 24 H 0.06 0.72 6.36 -51.93 -0.33 0.39 16 25 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 26 H 0.07 1.21 6.77 -51.93 -0.35 0.86 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.05 0.98 6.47 -51.93 -0.34 0.65 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.08 1.06 7.89 -51.93 -0.41 0.65 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.38 2.15 9.12 45.56 0.42 2.57 16 LS Contribution 290.27 15.07 4.37 4.37 Total: -1.00 -31.98 290.27 -6.78 -38.76 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -5.01 Total: -1.57 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.33 Total: -35.30 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.88 Total: -12.01 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.98 -6.78 -38.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708746674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.701 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds