Wall clock time and date at job start Sun Mar 29 2020 21:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99882 * 2 1 4 4 C 1.53000 * 109.47151 * 293.95749 * 3 2 1 5 5 C 1.53003 * 109.47279 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47297 * 180.02562 * 5 4 3 7 7 H 1.07996 * 120.00107 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00070 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99721 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00155 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47171 * 59.99641 * 10 8 6 12 12 H 1.48500 * 109.47284 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47063 * 300.00120 * 10 8 6 14 14 C 1.46894 * 111.00188 * 123.95558 * 2 1 3 15 15 H 1.09001 * 110.45514 * 297.19239 * 14 2 1 16 16 C 1.54483 * 110.50923 * 174.59347 * 14 2 1 17 17 O 1.44428 * 104.89902 * 217.32264 * 16 14 2 18 18 C 1.44688 * 105.13885 * 40.49479 * 17 16 14 19 19 C 1.54477 * 104.83958 * 319.51776 * 18 17 16 20 20 H 1.09000 * 110.62726 * 142.68118 * 19 18 17 21 21 O 1.42897 * 110.51241 * 265.33386 * 19 18 17 22 22 H 1.09007 * 109.47055 * 296.04456 * 1 2 3 23 23 H 1.09002 * 109.47409 * 56.04419 * 1 2 3 24 24 H 1.09003 * 109.47033 * 176.04776 * 1 2 3 25 25 H 1.09000 * 109.47509 * 53.95431 * 3 2 1 26 26 H 1.09000 * 109.47155 * 173.95847 * 3 2 1 27 27 H 1.09000 * 109.47435 * 299.99710 * 4 3 2 28 28 H 1.08998 * 109.47489 * 59.99808 * 4 3 2 29 29 H 1.09004 * 109.46658 * 299.99665 * 5 4 3 30 30 H 1.08998 * 109.47096 * 59.99470 * 5 4 3 31 31 H 0.97000 * 119.99974 * 179.97438 * 9 8 6 32 32 H 1.09002 * 110.37322 * 336.20778 * 16 14 2 33 33 H 1.08999 * 110.37312 * 98.43455 * 16 14 2 34 34 H 1.08996 * 110.35300 * 200.67684 * 18 17 16 35 35 H 1.08999 * 110.35366 * 78.36394 * 18 17 16 36 36 H 0.96692 * 114.00256 * 294.64140 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1802 3.4857 -1.3185 6 6 1.8210 4.1616 -2.6166 7 1 1.2581 3.6260 -3.3666 8 6 2.2112 5.4639 -2.8468 9 7 2.8963 6.1163 -1.9333 10 14 1.7667 6.3015 -4.4562 11 1 0.2895 6.3381 -4.6036 12 1 2.2992 7.6877 -4.4564 13 1 2.3584 5.5442 -5.5883 14 6 1.9955 -0.7660 1.1375 15 1 1.6963 -0.3045 2.0786 16 6 3.5342 -0.8729 1.0522 17 8 3.8409 -2.2026 1.5255 18 6 2.8173 -3.0518 0.9557 19 6 1.5131 -2.2324 1.0725 20 1 0.8819 -2.3883 0.1976 21 8 0.8080 -2.5808 2.2656 22 1 -0.3633 0.4512 0.9234 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0708 25 1 1.5611 1.9274 0.8309 26 1 3.0797 1.3445 0.1082 27 1 2.0657 1.5017 -2.1492 28 1 0.5471 2.0845 -1.4265 29 1 1.7461 4.0418 -0.4875 30 1 3.2644 3.4583 -1.2105 31 1 3.1712 7.0323 -2.0954 32 1 3.8666 -0.7511 0.0213 33 1 4.0026 -0.1250 1.6920 34 1 2.7350 -3.9790 1.5228 35 1 3.0397 -3.2641 -0.0901 36 1 0.4824 -3.4912 2.2783 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708746674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:53 Heat of formation + Delta-G solvation = -121.833662 kcal Electronic energy + Delta-G solvation = -16328.178719 eV Core-core repulsion = 13618.181835 eV Total energy + Delta-G solvation = -2709.996884 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.03853 -38.20156 -37.07701 -35.61930 -33.39202 -30.79420 -29.83485 -28.65898 -26.34915 -24.50669 -23.45175 -21.64999 -21.22067 -18.69871 -18.30001 -17.62451 -17.33841 -16.70232 -16.49464 -15.80160 -15.51879 -15.14409 -14.81319 -14.32821 -14.04803 -13.95371 -13.61829 -13.30674 -13.03126 -12.73540 -12.67838 -12.54770 -12.41171 -12.09937 -11.93579 -11.42482 -11.36081 -11.16496 -11.10626 -10.63447 -10.53474 -9.45023 -8.19075 -6.30114 1.41045 1.44113 1.52039 2.41065 2.56338 2.96655 3.14276 3.29619 3.57202 3.73727 3.96610 4.09515 4.15597 4.24403 4.43915 4.50639 4.59941 4.63559 4.68792 4.72670 4.75903 4.79700 4.92738 5.02251 5.06156 5.25912 5.51985 5.59990 5.73988 5.86555 5.94455 6.04075 6.27041 6.84321 6.86652 7.39175 8.92714 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.052842 B = 0.004680 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.758121 B = 5981.476038 C = 6209.958597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.530 5.530 3 C 0.063 3.937 4 C -0.088 4.088 5 C 0.025 3.975 6 C -0.543 4.543 7 H 0.060 0.940 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.965 3.035 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.266 1.266 14 C 0.051 3.949 15 H 0.048 0.952 16 C 0.053 3.947 17 O -0.391 6.391 18 C 0.017 3.983 19 C 0.082 3.918 20 H 0.097 0.903 21 O -0.576 6.576 22 H 0.020 0.980 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.024 0.976 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.053 0.947 29 H -0.012 1.012 30 H -0.007 1.007 31 H 0.263 0.737 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 -18.828 4.978 19.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.255 5.255 3 C -0.065 4.065 4 C -0.126 4.126 5 C -0.013 4.013 6 C -0.581 4.581 7 H 0.079 0.921 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.789 3.211 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.191 1.191 14 C -0.058 4.058 15 H 0.066 0.934 16 C -0.024 4.024 17 O -0.310 6.310 18 C -0.060 4.060 19 C 0.022 3.978 20 H 0.114 0.886 21 O -0.385 6.385 22 H 0.039 0.961 23 H 0.091 0.909 24 H 0.105 0.895 25 H 0.042 0.958 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.007 0.993 30 H 0.011 0.989 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.100 0.900 36 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.259 -18.373 4.892 19.291 hybrid contribution -0.554 0.875 -0.059 1.037 sum -3.813 -17.498 4.833 18.550 Atomic orbital electron populations 1.22510 0.86405 1.03020 1.00757 1.62145 1.08966 1.13645 1.40774 1.22112 0.99913 0.87093 0.97341 1.21391 0.99999 0.95213 0.95956 1.18979 0.94770 0.92174 0.95377 1.21656 1.35004 0.98321 1.03071 0.92140 1.25983 0.94934 0.98304 1.00606 1.70092 1.39321 1.11780 1.36264 0.85503 0.78903 0.77280 0.79377 1.19161 1.20895 1.19118 1.22942 0.95668 0.94285 0.92870 0.93359 1.23475 0.92889 0.85275 1.00755 1.89167 1.50907 1.18360 1.72544 1.24371 0.86311 0.95008 1.00323 1.23085 0.93547 0.92561 0.88570 0.88568 1.86508 1.75226 1.36766 1.39966 0.96096 0.90889 0.89488 0.95808 0.90889 0.92503 0.92868 0.99311 0.98868 0.92798 0.90708 0.88851 0.86560 0.89961 0.74842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.08 127.69 1.16 1.69 16 2 N -0.53 -15.15 4.56 -891.06 -4.06 -19.21 16 3 C 0.06 2.18 4.82 86.30 0.42 2.60 16 4 C -0.09 -3.61 5.08 30.60 0.16 -3.46 16 5 C 0.02 1.31 4.97 29.85 0.15 1.46 16 6 C -0.54 -31.09 9.11 25.60 0.23 -30.86 16 7 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 8 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 9 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 10 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 14 C 0.05 1.35 2.64 45.93 0.12 1.47 16 15 H 0.05 1.43 8.00 -2.39 -0.02 1.41 16 16 C 0.05 1.39 5.92 72.49 0.43 1.82 16 17 O -0.39 -10.19 11.67 -148.98 -1.74 -11.93 16 18 C 0.02 0.30 7.38 72.48 0.53 0.84 16 19 C 0.08 1.62 3.64 31.61 0.11 1.73 16 20 H 0.10 1.66 6.46 -2.39 -0.02 1.65 16 21 O -0.58 -10.91 13.30 -148.98 -1.98 -12.89 16 22 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 23 H 0.07 1.98 6.30 -2.39 -0.02 1.96 16 24 H 0.09 1.79 6.36 -2.39 -0.02 1.78 16 25 H 0.02 0.86 8.12 -2.39 -0.02 0.84 16 26 H 0.07 2.50 6.77 -2.39 -0.02 2.48 16 27 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.05 2.13 6.47 -2.39 -0.02 2.11 16 29 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 30 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 32 H 0.07 1.99 7.89 -2.39 -0.02 1.97 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.12 1.54 8.09 -2.39 -0.02 1.52 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.40 3.29 9.12 -74.06 -0.68 2.61 16 Total: -1.00 -68.30 290.27 -1.31 -69.61 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.38 Total: 7.35 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 3.77 Total: -22.29 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -3.77 Total: -76.25 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -3.72 Total: -24.83 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -68.30 -1.31 -69.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708746674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.221 kcal (2) G-P(sol) polarization free energy of solvation -68.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds