Wall clock time and date at job start Sun Mar 29 2020 21:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46493 * 112.85271 * 118.37708 * 3 2 1 5 5 S 1.65608 * 119.99916 * 50.33143 * 4 3 2 6 6 O 1.42093 * 106.40109 * 178.26884 * 5 4 3 7 7 O 1.42107 * 106.40103 * 311.18868 * 5 4 3 8 8 C 1.76202 * 107.21687 * 64.72608 * 5 4 3 9 9 H 1.08001 * 119.99832 * 359.97438 * 8 5 4 10 10 C 1.37874 * 119.99924 * 180.02562 * 8 5 4 11 11 N 1.31514 * 120.00002 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 120.00069 * 180.02562 * 10 8 5 13 13 H 1.48503 * 109.47123 * 90.00026 * 12 10 8 14 14 H 1.48496 * 109.47232 * 210.00275 * 12 10 8 15 15 H 1.48501 * 109.46875 * 330.00040 * 12 10 8 16 16 C 1.53786 * 113.61319 * 249.57725 * 3 2 1 17 17 C 1.53952 * 87.02114 * 89.22987 * 16 3 2 18 18 C 1.53775 * 87.11209 * 25.35962 * 17 16 3 19 19 H 0.97000 * 120.00740 * 230.05805 * 4 3 2 20 20 H 0.97004 * 120.00200 * 180.02562 * 11 10 8 21 21 H 1.09008 * 113.60890 * 203.75122 * 16 3 2 22 22 H 1.09003 * 113.61453 * 334.64530 * 16 3 2 23 23 H 1.09005 * 113.53508 * 270.80893 * 17 16 3 24 24 H 1.09000 * 113.74044 * 139.94571 * 17 16 3 25 25 H 1.08994 * 113.61538 * 220.08801 * 18 17 16 26 26 H 1.09004 * 113.68624 * 89.19943 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.1766 0.6425 -1.1877 5 16 2.6538 2.1452 -1.6472 6 8 3.4154 2.5021 -2.7925 7 8 1.2337 2.0947 -1.6429 8 6 3.1155 3.2704 -0.3722 9 1 3.6416 2.9117 0.5001 10 6 2.8041 4.6086 -0.4877 11 7 2.1621 5.0451 -1.5493 12 14 3.2941 5.8016 0.8636 13 1 4.6455 6.3463 0.5769 14 1 2.3133 6.9151 0.9204 15 1 3.3130 5.0916 2.1677 16 6 3.2238 0.4926 1.3205 17 6 3.1734 -0.9708 1.7960 18 6 3.2246 -1.3730 0.3127 19 1 3.8622 0.1891 -1.7029 20 1 1.9433 5.9866 -1.6307 21 1 4.2361 0.8819 1.2118 22 1 2.5714 1.1589 1.8850 23 1 2.2380 -1.2365 2.2885 24 1 4.0523 -1.2786 2.3625 25 1 2.5729 -2.2108 0.0647 26 1 4.2366 -1.4953 -0.0732 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711236659.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:26 Heat of formation + Delta-G solvation = -70.724968 kcal Electronic energy + Delta-G solvation = -14504.459508 eV Core-core repulsion = 11902.339634 eV Total energy + Delta-G solvation = -2602.119873 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.64133 -37.42323 -36.76085 -36.14102 -35.18735 -33.80076 -28.31407 -26.60740 -26.43842 -22.09917 -21.00912 -19.53685 -18.39126 -18.26382 -17.05912 -16.86188 -15.88733 -15.73336 -15.47378 -14.88771 -14.07038 -13.93423 -13.89122 -13.48745 -13.28273 -12.98972 -12.95930 -12.77377 -12.50166 -12.38625 -12.28622 -11.86550 -11.62026 -11.30451 -11.21352 -10.94058 -10.39103 -8.72877 -7.43981 0.28367 1.36611 1.37706 1.52928 1.68543 1.69519 2.23273 2.62100 2.75214 3.04242 3.51171 3.63984 3.77618 3.94582 4.24463 4.56301 4.88524 4.92734 4.94986 5.12128 5.17260 5.24641 5.31923 5.54112 5.96383 6.34030 6.57327 6.82566 8.23779 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.029523 B = 0.011838 C = 0.010414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.196339 B = 2364.659377 C = 2688.000979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.223 3.777 3 C 0.224 3.776 4 N -1.096 6.096 5 S 2.700 3.300 6 O -1.042 7.042 7 O -1.041 7.041 8 C -1.025 5.025 9 H 0.138 0.862 10 C 0.068 3.932 11 N -0.900 5.900 12 Si 0.988 3.012 13 H -0.252 1.252 14 H -0.274 1.274 15 H -0.239 1.239 16 C -0.144 4.144 17 C -0.124 4.124 18 C -0.102 4.102 19 H 0.430 0.570 20 H 0.296 0.704 21 H 0.127 0.873 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.119 0.881 25 H 0.089 0.911 26 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.308 -10.574 9.022 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.097 4.097 3 C 0.131 3.869 4 N -0.856 5.856 5 S 2.803 3.197 6 O -1.032 7.032 7 O -1.030 7.030 8 C -1.160 5.160 9 H 0.155 0.845 10 C -0.144 4.144 11 N -0.531 5.531 12 Si 0.806 3.194 13 H -0.176 1.176 14 H -0.199 1.199 15 H -0.162 1.162 16 C -0.184 4.184 17 C -0.162 4.162 18 C -0.141 4.141 19 H 0.267 0.733 20 H 0.106 0.894 21 H 0.146 0.854 22 H 0.086 0.914 23 H 0.100 0.900 24 H 0.137 0.863 25 H 0.108 0.892 26 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.893 -10.189 8.127 14.303 hybrid contribution 0.461 1.069 0.071 1.167 sum 6.354 -9.120 8.197 13.811 Atomic orbital electron populations 1.81006 1.14259 1.09224 1.08162 1.29174 0.95164 0.92514 0.92801 1.19006 0.79040 1.01403 0.87499 1.55355 1.54960 1.35926 1.39343 1.00457 0.72261 0.72333 0.74683 1.93321 1.73163 1.83147 1.53613 1.93362 1.34241 1.86856 1.88580 1.30881 1.52202 1.07098 1.25787 0.84462 1.26044 0.89535 1.00580 0.98289 1.70024 1.34399 1.19274 1.29434 0.85158 0.79205 0.76732 0.78311 1.17557 1.19882 1.16212 1.23771 1.03178 0.99573 0.91909 1.22832 1.04632 0.92993 0.95734 1.23391 1.03314 0.90768 0.96669 0.73267 0.89449 0.85442 0.91424 0.90011 0.86298 0.89205 0.84217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -20.54 18.47 20.00 0.37 -20.17 15 2 C 0.22 8.89 12.08 89.44 1.08 9.97 15 3 C 0.22 6.78 1.40 2.33 0.00 6.78 15 4 N -1.10 -38.78 5.76 -157.33 -0.91 -39.69 15 5 S 2.70 141.11 4.98 -56.49 -0.28 140.82 15 6 O -1.04 -61.05 18.02 -128.00 -2.31 -63.35 15 7 O -1.04 -62.80 15.69 -128.00 -2.01 -64.81 15 8 C -1.03 -53.16 9.33 67.73 0.63 -52.53 15 9 H 0.14 6.00 6.33 -2.91 -0.02 5.98 15 10 C 0.07 3.69 5.46 84.65 0.46 4.15 15 11 N -0.90 -53.86 13.19 21.45 0.28 -53.58 15 12 Si 0.99 40.07 29.54 68.60 2.03 42.09 15 13 H -0.25 -9.53 7.11 99.48 0.71 -8.82 15 14 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 15 H -0.24 -8.77 7.11 99.48 0.71 -8.06 15 16 C -0.14 -3.54 5.96 31.18 0.19 -3.35 15 17 C -0.12 -1.95 7.80 31.18 0.24 -1.71 15 18 C -0.10 -1.73 7.34 31.12 0.23 -1.50 15 19 H 0.43 11.74 8.77 -96.75 -0.85 10.89 15 20 H 0.30 16.07 8.31 -92.71 -0.77 15.30 15 21 H 0.13 2.68 7.82 -2.38 -0.02 2.67 15 22 H 0.07 1.90 8.08 -2.39 -0.02 1.89 15 23 H 0.08 1.35 8.13 -2.38 -0.02 1.33 15 24 H 0.12 1.08 8.14 -2.39 -0.02 1.06 15 25 H 0.09 1.39 8.08 -2.39 -0.02 1.37 15 26 H 0.14 1.48 8.13 -2.38 -0.02 1.46 15 Total: -1.00 -82.39 248.15 0.38 -82.01 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.37 Total: 14.86 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 2.84 Total: -38.19 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -0.25 Total: -113.43 kcal Atomic # 8 Polarization: -123.85 SS G_CDS: -4.31 Total: -128.17 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.09 kcal Atomic # 16 Polarization: 141.11 SS G_CDS: -0.28 Total: 140.82 kcal Total: -82.39 0.38 -82.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711236659.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.285 kcal (2) G-P(sol) polarization free energy of solvation -82.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds