Wall clock time and date at job start Sun Mar 29 2020 21:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.47264 * 180.02562 * 11 10 9 13 13 C 1.46848 * 110.99924 * 45.78956 * 12 11 10 14 14 C 1.53037 * 109.52358 * 185.83640 * 13 12 11 15 15 C 1.53117 * 109.27851 * 300.82272 * 14 13 12 16 16 C 1.53122 * 109.16120 * 57.65739 * 15 14 13 17 17 H 1.08990 * 109.50787 * 62.28120 * 16 15 14 18 18 C 1.53004 * 109.53284 * 182.38530 * 16 15 14 19 19 F 1.39900 * 109.46546 * 184.82098 * 18 16 15 20 20 C 1.46850 * 111.00104 * 169.99998 * 12 11 10 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 23 23 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 24 24 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 25 25 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 26 26 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 27 27 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 28 28 H 1.08999 * 109.46209 * 305.85435 * 13 12 11 29 29 H 1.09000 * 109.45864 * 65.82340 * 13 12 11 30 30 H 1.08997 * 109.50326 * 180.87501 * 14 13 12 31 31 H 1.09004 * 109.53153 * 60.78259 * 14 13 12 32 32 H 1.08991 * 109.52438 * 297.74611 * 15 14 13 33 33 H 1.09001 * 109.51774 * 177.55499 * 15 14 13 34 34 H 1.08995 * 109.46617 * 304.81616 * 18 16 15 35 35 H 1.08992 * 109.47382 * 64.81842 * 18 16 15 36 36 H 1.09002 * 109.46079 * 294.17708 * 20 12 11 37 37 H 1.09005 * 109.46269 * 54.15488 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0079 12 7 2.4348 -6.1037 0.0061 13 6 3.5072 -5.8808 0.9843 14 6 4.5567 -6.9869 0.8535 15 6 3.8928 -8.3451 1.0966 16 6 2.7486 -8.5315 0.0962 17 1 3.1485 -8.5342 -0.9177 18 6 2.0411 -9.8601 0.3699 19 9 1.0683 -10.0811 -0.6109 20 6 1.7515 -7.3806 0.2490 21 1 -0.4850 0.8401 0.0004 22 1 0.6281 -2.5552 0.8979 23 1 0.6206 -2.5586 -0.8820 24 1 2.8678 -3.6059 -0.8902 25 1 2.8760 -3.6028 0.8897 26 1 0.8573 -5.0435 0.9006 27 1 0.8498 -5.0461 -0.8793 28 1 3.9737 -4.9136 0.7976 29 1 3.0891 -5.8941 1.9908 30 1 5.3446 -6.8299 1.5901 31 1 4.9857 -6.9656 -0.1484 32 1 3.4984 -8.3812 2.1120 33 1 4.6275 -9.1389 0.9617 34 1 2.7694 -10.6707 0.3484 35 1 1.5666 -9.8239 1.3505 36 1 1.3417 -7.3869 1.2590 37 1 0.9429 -7.5028 -0.4718 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711411376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:19 Heat of formation + Delta-G solvation = -78.205491 kcal Electronic energy + Delta-G solvation = -16105.454768 eV Core-core repulsion = 13409.722533 eV Total energy + Delta-G solvation = -2695.732235 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.71358 -39.08926 -35.12659 -33.10885 -31.63483 -30.87308 -26.84260 -26.09454 -24.08987 -22.45787 -21.64431 -19.93334 -19.47293 -16.46452 -16.20062 -15.91907 -15.72153 -14.89341 -14.82563 -14.46796 -14.28138 -13.77148 -13.36208 -13.16249 -12.68513 -12.18118 -11.91675 -11.66960 -11.44208 -11.21579 -10.95749 -10.86911 -10.74491 -10.68770 -10.56087 -10.30529 -10.14676 -9.59538 -9.30618 -9.03284 -8.32078 -8.01614 -5.97546 -3.99821 3.34890 3.39056 3.41640 4.02476 4.40716 4.48431 4.58914 4.65563 4.82566 4.95814 5.16242 5.33094 5.38102 5.38403 5.48010 5.56146 5.65760 5.69106 5.79837 5.88323 5.89060 6.07456 6.09841 6.18547 6.32032 6.33181 6.72178 6.79871 7.11015 7.41295 7.43136 7.69856 7.85161 8.02601 8.45625 9.07081 9.63975 11.13895 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.050630 B = 0.004557 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.900075 B = 6143.244578 C = 6583.347183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.112 4.112 11 C 0.056 3.944 12 N -0.538 5.538 13 C 0.046 3.954 14 C -0.116 4.116 15 C -0.113 4.113 16 C -0.118 4.118 17 H 0.090 0.910 18 C 0.067 3.933 19 F -0.218 7.218 20 C 0.060 3.940 21 H 0.261 0.739 22 H 0.013 0.987 23 H 0.016 0.984 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.029 0.971 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.030 0.970 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.500 -18.280 2.739 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.149 4.149 11 C -0.070 4.070 12 N -0.263 5.263 13 C -0.082 4.082 14 C -0.153 4.153 15 C -0.151 4.151 16 C -0.137 4.137 17 H 0.108 0.892 18 C 0.012 3.988 19 F -0.199 7.199 20 C -0.068 4.068 21 H 0.070 0.930 22 H 0.032 0.968 23 H 0.035 0.965 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.528 -18.181 2.255 19.448 hybrid contribution -0.065 0.988 0.796 1.270 sum 6.463 -17.194 3.050 18.620 Atomic orbital electron populations 1.69960 1.06066 1.26662 1.50889 1.25027 0.94839 0.99231 0.95365 0.86659 0.79578 0.83157 0.78604 1.20210 1.21303 1.20294 1.21208 0.92972 0.91068 1.50540 0.92766 1.19068 0.94017 0.91327 0.97151 1.21797 0.99343 0.93077 1.00727 1.22284 0.94019 0.90470 1.00275 1.61995 1.12724 1.01940 1.49621 1.22237 0.92915 0.99703 0.93315 1.21579 0.97584 0.93766 1.02406 1.21541 0.96889 0.98167 0.98493 1.21818 0.96488 0.93577 1.01848 0.89153 1.22044 0.89058 0.97960 0.89771 1.92767 1.65680 1.95993 1.65462 1.22060 0.95817 0.89289 0.99665 0.92979 0.96843 0.96513 0.92527 0.93165 0.95396 0.91005 0.89225 0.95269 0.91526 0.91047 0.92052 0.91737 0.90794 0.91012 0.95147 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.35 4.40 -26.73 -0.12 -2.47 16 11 C 0.06 1.02 5.27 -3.82 -0.02 1.00 16 12 N -0.54 -8.37 4.81 -234.67 -1.13 -9.50 16 13 C 0.05 0.65 4.85 -3.83 -0.02 0.63 16 14 C -0.12 -1.27 6.09 -26.65 -0.16 -1.43 16 15 C -0.11 -1.06 5.29 -26.61 -0.14 -1.20 16 16 C -0.12 -1.25 2.65 -90.54 -0.24 -1.49 16 17 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 18 C 0.07 0.60 6.91 37.16 0.26 0.86 16 19 F -0.22 -2.63 17.05 2.25 0.04 -2.59 16 20 C 0.06 0.80 4.62 -3.83 -0.02 0.78 16 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.05 1.03 6.21 -51.93 -0.32 0.70 16 26 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 27 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.09 1.38 5.81 -51.93 -0.30 1.07 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 1.07 7.94 -51.93 -0.41 0.66 16 LS Contribution 295.56 15.07 4.45 4.45 Total: -1.00 -30.51 295.56 -8.42 -38.94 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -6.49 Total: -5.00 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -1.01 Total: -16.58 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.39 Total: -36.07 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.59 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.51 -8.42 -38.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711411376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.269 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds