Wall clock time and date at job start Sun Mar 29 2020 21:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 N 1.46904 * 109.47264 * 180.02562 * 11 10 9 13 13 C 1.46848 * 110.99924 * 45.78956 * 12 11 10 14 14 C 1.53037 * 109.52358 * 185.83640 * 13 12 11 15 15 C 1.53117 * 109.27851 * 300.82272 * 14 13 12 16 16 C 1.53122 * 109.16120 * 57.65739 * 15 14 13 17 17 H 1.08990 * 109.50787 * 62.28120 * 16 15 14 18 18 C 1.53004 * 109.53284 * 182.38530 * 16 15 14 19 19 F 1.39900 * 109.46546 * 184.82098 * 18 16 15 20 20 C 1.46850 * 111.00104 * 169.99998 * 12 11 10 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 23 23 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 24 24 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 25 25 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 26 26 H 1.08998 * 109.47353 * 300.00222 * 11 10 9 27 27 H 1.09001 * 109.47005 * 60.00203 * 11 10 9 28 28 H 1.08999 * 109.46209 * 305.85435 * 13 12 11 29 29 H 1.09000 * 109.45864 * 65.82340 * 13 12 11 30 30 H 1.08997 * 109.50326 * 180.87501 * 14 13 12 31 31 H 1.09004 * 109.53153 * 60.78259 * 14 13 12 32 32 H 1.08991 * 109.52438 * 297.74611 * 15 14 13 33 33 H 1.09001 * 109.51774 * 177.55499 * 15 14 13 34 34 H 1.08995 * 109.46617 * 304.81616 * 18 16 15 35 35 H 1.08992 * 109.47382 * 64.81842 * 18 16 15 36 36 H 1.09002 * 109.46079 * 294.17708 * 20 12 11 37 37 H 1.09005 * 109.46269 * 54.15488 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0079 12 7 2.4348 -6.1037 0.0061 13 6 3.5072 -5.8808 0.9843 14 6 4.5567 -6.9869 0.8535 15 6 3.8928 -8.3451 1.0966 16 6 2.7486 -8.5315 0.0962 17 1 3.1485 -8.5342 -0.9177 18 6 2.0411 -9.8601 0.3699 19 9 1.0683 -10.0811 -0.6109 20 6 1.7515 -7.3806 0.2490 21 1 -0.4850 0.8401 0.0004 22 1 0.6281 -2.5552 0.8979 23 1 0.6206 -2.5586 -0.8820 24 1 2.8678 -3.6059 -0.8902 25 1 2.8760 -3.6028 0.8897 26 1 0.8573 -5.0435 0.9006 27 1 0.8498 -5.0461 -0.8793 28 1 3.9737 -4.9136 0.7976 29 1 3.0891 -5.8941 1.9908 30 1 5.3446 -6.8299 1.5901 31 1 4.9857 -6.9656 -0.1484 32 1 3.4984 -8.3812 2.1120 33 1 4.6275 -9.1389 0.9617 34 1 2.7694 -10.6707 0.3484 35 1 1.5666 -9.8239 1.3505 36 1 1.3417 -7.3869 1.2590 37 1 0.9429 -7.5028 -0.4718 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711411376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:19 Heat of formation + Delta-G solvation = -96.630177 kcal Electronic energy + Delta-G solvation = -16106.253722 eV Core-core repulsion = 13409.722533 eV Total energy + Delta-G solvation = -2696.531189 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.53516 -40.19483 -36.59842 -34.96192 -32.74221 -32.49658 -28.58888 -27.01374 -25.68755 -23.57096 -23.17807 -21.20166 -20.70825 -18.51609 -17.10029 -17.03625 -16.63262 -16.46149 -16.28333 -15.72585 -15.51489 -14.87716 -14.69898 -14.41748 -14.05450 -13.60168 -13.56475 -13.16344 -12.84655 -12.67746 -12.46902 -12.31500 -12.14256 -11.78734 -11.66489 -11.51406 -11.40722 -11.34887 -11.16911 -10.92372 -10.55331 -9.27654 -8.20793 -6.32449 1.39647 1.43207 1.51163 2.40520 2.88750 3.12231 3.58600 3.75188 3.80569 4.10522 4.14025 4.19487 4.24895 4.32085 4.43487 4.49854 4.59584 4.64682 4.72042 4.77775 4.83280 4.91421 5.00629 5.09322 5.10838 5.16665 5.20746 5.32117 5.46451 5.49596 5.70892 5.82962 6.07814 6.20432 6.25825 6.83956 7.36914 8.91141 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.050630 B = 0.004557 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.900075 B = 6143.244578 C = 6583.347183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.025 3.975 10 C -0.094 4.094 11 C 0.066 3.934 12 N -0.544 5.544 13 C 0.042 3.958 14 C -0.111 4.111 15 C -0.108 4.108 16 C -0.113 4.113 17 H 0.080 0.920 18 C 0.065 3.935 19 F -0.238 7.238 20 C 0.057 3.943 21 H 0.264 0.736 22 H -0.011 1.011 23 H -0.010 1.010 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.022 0.978 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.027 0.973 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.033 0.967 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.388 -19.251 3.415 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.061 4.061 12 N -0.269 5.269 13 C -0.086 4.086 14 C -0.149 4.149 15 C -0.145 4.145 16 C -0.132 4.132 17 H 0.099 0.901 18 C 0.010 3.990 19 F -0.219 7.219 20 C -0.071 4.071 21 H 0.073 0.927 22 H 0.008 0.992 23 H 0.009 0.991 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.051 0.949 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.429 -19.174 2.933 21.150 hybrid contribution -0.684 1.272 0.588 1.559 sum 7.746 -17.902 3.521 19.821 Atomic orbital electron populations 1.70100 1.07892 1.27883 1.51595 1.26014 0.95778 1.03468 0.94608 0.85473 0.78259 0.77897 0.79255 1.19128 1.20770 1.19033 1.21649 0.93539 0.92292 1.50735 0.92137 1.18973 0.94406 0.93194 0.94657 1.21533 0.98102 0.92701 1.00822 1.22020 0.94068 0.90365 0.99680 1.61987 1.12452 1.01840 1.50613 1.22312 0.93122 1.00436 0.92703 1.21569 0.96992 0.93514 1.02823 1.21537 0.96769 0.97843 0.98378 1.21778 0.96311 0.93175 1.01928 0.90110 1.22240 0.89252 0.97799 0.89714 1.92731 1.66665 1.96056 1.66448 1.22144 0.96424 0.89148 0.99370 0.92739 0.99239 0.99145 0.92870 0.92439 0.95925 0.91833 0.90943 0.95424 0.89601 0.91512 0.91170 0.88952 0.87780 0.89594 0.94869 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.54 -31.77 9.11 25.60 0.23 -31.53 16 8 H 0.06 3.37 7.74 -2.92 -0.02 3.35 16 9 C 0.03 1.39 4.97 29.85 0.15 1.53 16 10 C -0.09 -4.05 4.40 30.59 0.13 -3.91 16 11 C 0.07 2.47 5.27 86.30 0.46 2.92 16 12 N -0.54 -16.80 4.81 -896.35 -4.31 -21.10 16 13 C 0.04 1.14 4.85 86.33 0.42 1.56 16 14 C -0.11 -2.17 6.09 30.65 0.19 -1.99 16 15 C -0.11 -1.65 5.29 30.67 0.16 -1.48 16 16 C -0.11 -2.14 2.65 -10.74 -0.03 -2.17 16 17 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 18 C 0.06 0.99 6.91 71.98 0.50 1.49 16 19 F -0.24 -5.39 17.05 44.97 0.77 -4.63 16 20 C 0.06 1.47 4.62 86.32 0.40 1.87 16 21 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 22 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 23 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 24 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.06 2.38 6.21 -2.38 -0.01 2.37 16 26 H 0.02 0.85 8.08 -2.39 -0.02 0.83 16 27 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.07 2.20 5.81 -2.39 -0.01 2.18 16 29 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 1.80 7.94 -2.38 -0.02 1.78 16 Total: -1.00 -66.52 295.56 2.85 -63.67 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 1.01 Total: 4.28 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: 3.07 Total: -31.31 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -4.02 Total: -78.85 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.77 Total: -4.63 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -66.52 2.85 -63.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711411376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.960 kcal (2) G-P(sol) polarization free energy of solvation -66.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds