Wall clock time and date at job start Sun Mar 29 2020 21:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47321 * 2 1 4 4 H 1.09003 * 109.47347 * 302.41453 * 3 2 1 5 5 C 1.50700 * 109.47437 * 182.41736 * 3 2 1 6 6 H 1.08003 * 119.99854 * 240.00048 * 5 3 2 7 7 C 1.37875 * 120.00113 * 59.99219 * 5 3 2 8 8 N 1.31509 * 119.99717 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99861 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47655 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47222 * 120.00625 * 9 7 5 12 12 H 1.48498 * 109.47221 * 240.00379 * 9 7 5 13 13 N 1.46905 * 109.47222 * 62.41510 * 3 2 1 14 14 C 1.46850 * 110.99812 * 189.69154 * 13 3 2 15 15 C 1.53039 * 109.51835 * 174.15721 * 14 13 3 16 16 C 1.53122 * 109.27852 * 59.18296 * 15 14 13 17 17 C 1.53125 * 109.15791 * 302.34287 * 16 15 14 18 18 H 1.08996 * 109.49965 * 297.71257 * 17 16 15 19 19 C 1.52999 * 109.50183 * 177.63579 * 17 16 15 20 20 F 1.39898 * 109.47130 * 180.02562 * 19 17 16 21 21 C 1.46931 * 110.98511 * 65.46288 * 13 3 2 22 22 H 1.09002 * 109.46998 * 294.66294 * 1 2 3 23 23 H 1.08999 * 109.47107 * 54.66520 * 1 2 3 24 24 H 1.09002 * 109.46812 * 174.66599 * 1 2 3 25 25 H 1.09002 * 109.47217 * 239.99914 * 2 1 3 26 26 H 1.09009 * 109.47305 * 119.99854 * 2 1 3 27 27 H 0.97005 * 119.99688 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.45963 * 54.14730 * 14 13 3 29 29 H 1.08995 * 109.45442 * 294.17200 * 14 13 3 30 30 H 1.08992 * 109.50572 * 299.23886 * 15 14 13 31 31 H 1.09003 * 109.53362 * 179.14114 * 15 14 13 32 32 H 1.09002 * 109.52450 * 182.43833 * 16 15 14 33 33 H 1.09005 * 109.57556 * 62.27587 * 16 15 14 34 34 H 1.09005 * 109.46780 * 300.07904 * 19 17 16 35 35 H 1.09001 * 109.47226 * 60.07577 * 19 17 16 36 36 H 1.08993 * 109.44919 * 65.84393 * 21 13 3 37 37 H 1.08995 * 109.51486 * 305.84157 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6418 1.9687 -0.8676 5 6 3.5458 1.4429 -0.0599 6 1 4.1177 1.8993 0.7345 7 6 4.1934 0.8605 -1.1288 8 7 3.4970 0.3051 -2.0962 9 14 6.0599 0.8605 -1.2026 10 1 6.6030 1.5427 -0.0007 11 1 6.5538 -0.5394 -1.2422 12 1 6.5070 1.5777 -2.4237 13 7 1.5986 2.1179 1.2276 14 6 1.8691 3.5598 1.1611 15 6 1.2676 4.2499 2.3876 16 6 1.8842 3.6539 3.6561 17 6 1.6303 2.1440 3.6768 18 1 0.5572 1.9559 3.7094 19 6 2.2941 1.5312 4.9116 20 9 2.0622 0.1517 4.9295 21 6 2.2214 1.5141 2.4135 22 1 -0.3633 0.4288 0.9339 23 1 -0.3633 0.5943 -0.8383 24 1 -0.3633 -1.0233 -0.0955 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 3.9526 -0.1043 -2.8484 28 1 1.4216 3.9719 0.2567 29 1 2.9460 3.7266 1.1421 30 1 0.1889 4.0949 2.3999 31 1 1.4814 5.3179 2.3462 32 1 1.4273 4.1121 4.5333 33 1 2.9578 3.8428 3.6639 34 1 3.3672 1.7197 4.8785 35 1 1.8738 1.9813 5.8110 36 1 3.2966 1.6908 2.3885 37 1 2.0297 0.4411 2.4189 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711413108.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:30 Heat of formation + Delta-G solvation = -71.052069 kcal Electronic energy + Delta-G solvation = -17262.793188 eV Core-core repulsion = 14567.371149 eV Total energy + Delta-G solvation = -2695.422039 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.30010 -38.53530 -34.92813 -32.10344 -31.44967 -30.25388 -26.58214 -25.68614 -23.84984 -22.41665 -21.13198 -19.52718 -18.95565 -16.40965 -15.79990 -15.43345 -15.35456 -14.53946 -14.28563 -14.06592 -13.26748 -13.10467 -12.94338 -12.63716 -12.48654 -11.77360 -11.42441 -11.26602 -11.17295 -10.92747 -10.80033 -10.62455 -10.46945 -10.35328 -10.11004 -9.99350 -9.68376 -9.58775 -9.22519 -9.01831 -8.34972 -7.07918 -5.97244 -4.10423 3.25850 3.34601 3.37274 4.40281 4.72412 4.94698 5.08492 5.21073 5.24831 5.29552 5.41499 5.68927 5.86014 5.93235 6.00510 6.18312 6.23724 6.30642 6.38267 6.44204 6.51112 6.60015 6.70269 6.76059 6.82227 6.91481 7.17226 7.23183 7.40443 7.64707 7.79530 8.01599 8.18952 8.36463 8.51057 8.99945 9.57005 11.01938 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.022489 B = 0.009266 C = 0.008916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.754013 B = 3021.048313 C = 3139.520118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C 0.214 3.786 4 H 0.038 0.962 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.533 5.533 14 C 0.062 3.938 15 C -0.114 4.114 16 C -0.109 4.109 17 C -0.121 4.121 18 H 0.082 0.918 19 C 0.068 3.932 20 F -0.218 7.218 21 C 0.069 3.931 22 H 0.045 0.955 23 H 0.038 0.962 24 H 0.024 0.976 25 H 0.091 0.909 26 H 0.033 0.967 27 H 0.260 0.740 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.037 0.963 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.277 4.719 9.893 11.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.056 0.944 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.257 5.257 14 C -0.067 4.067 15 C -0.152 4.152 16 C -0.147 4.147 17 C -0.140 4.140 18 H 0.100 0.900 19 C 0.013 3.987 20 F -0.200 7.200 21 C -0.059 4.059 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.043 0.957 25 H 0.109 0.891 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.771 4.530 9.740 11.384 hybrid contribution 2.019 0.008 -0.218 2.031 sum -1.751 4.538 9.521 10.692 Atomic orbital electron populations 1.21684 0.98853 0.98300 1.00485 1.21595 0.92210 0.99150 1.01967 1.19280 0.92635 0.91043 0.86260 0.94444 1.21777 0.92760 1.37233 1.06308 0.92588 1.24906 0.97882 0.95080 0.95562 1.69887 1.34835 1.37737 1.09887 0.86641 0.86372 0.77739 0.77851 1.20014 1.20986 1.21054 1.62384 1.57778 1.01603 1.03927 1.21854 0.98419 0.90019 0.96424 1.21579 1.00588 0.98246 0.94784 1.21488 1.00731 0.94440 0.98044 1.21878 1.01503 0.95581 0.95063 0.89994 1.22030 1.01404 0.76154 0.99112 1.92750 1.96272 1.33139 1.97799 1.21887 0.96482 0.99059 0.88516 0.93546 0.94264 0.95660 0.89086 0.94803 0.92978 0.91907 0.94808 0.91775 0.92483 0.92612 0.92270 0.91232 0.91487 0.94454 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.71 37.16 0.36 -2.47 16 2 C -0.11 -2.67 5.09 -26.73 -0.14 -2.81 16 3 C 0.21 5.28 1.73 -68.86 -0.12 5.16 16 4 H 0.04 1.02 7.99 -51.93 -0.42 0.61 16 5 C -0.54 -14.46 7.23 -34.44 -0.25 -14.71 16 6 H 0.06 1.51 5.84 -52.48 -0.31 1.20 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -24.94 11.30 55.43 0.63 -24.31 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.53 -11.17 4.05 -228.01 -0.92 -12.09 16 14 C 0.06 1.17 5.19 -3.83 -0.02 1.15 16 15 C -0.11 -1.69 6.09 -26.65 -0.16 -1.85 16 16 C -0.11 -1.49 5.29 -26.60 -0.14 -1.63 16 17 C -0.12 -1.86 2.68 -90.54 -0.24 -2.11 16 18 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 19 C 0.07 0.93 6.96 37.16 0.26 1.19 16 20 F -0.22 -3.60 16.86 2.25 0.04 -3.56 16 21 C 0.07 1.36 3.94 -3.79 -0.01 1.34 16 22 H 0.05 0.93 7.83 -51.93 -0.41 0.52 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.09 2.44 6.01 -51.93 -0.31 2.13 16 26 H 0.03 0.82 6.31 -51.92 -0.33 0.49 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.06 1.21 8.02 -51.93 -0.42 0.79 16 29 H 0.03 0.70 7.27 -51.93 -0.38 0.32 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.80 6.39 -51.93 -0.33 0.47 16 37 H 0.07 1.60 5.85 -51.93 -0.30 1.30 16 LS Contribution 285.37 15.07 4.30 4.30 Total: -1.00 -27.71 285.37 -7.68 -35.38 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.14 Total: -0.91 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -0.56 Total: -14.98 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.30 Total: -36.41 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.04 Total: -3.56 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.71 -7.68 -35.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711413108.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.671 kcal (2) G-P(sol) polarization free energy of solvation -27.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds