Wall clock time and date at job start Sun Mar 29 2020 21:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47321 * 2 1 4 4 H 1.09003 * 109.47347 * 302.41453 * 3 2 1 5 5 C 1.50700 * 109.47437 * 182.41736 * 3 2 1 6 6 H 1.08003 * 119.99854 * 240.00048 * 5 3 2 7 7 C 1.37875 * 120.00113 * 59.99219 * 5 3 2 8 8 N 1.31509 * 119.99717 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99861 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47655 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47222 * 120.00625 * 9 7 5 12 12 H 1.48498 * 109.47221 * 240.00379 * 9 7 5 13 13 N 1.46905 * 109.47222 * 62.41510 * 3 2 1 14 14 C 1.46850 * 110.99812 * 189.69154 * 13 3 2 15 15 C 1.53039 * 109.51835 * 174.15721 * 14 13 3 16 16 C 1.53122 * 109.27852 * 59.18296 * 15 14 13 17 17 C 1.53125 * 109.15791 * 302.34287 * 16 15 14 18 18 H 1.08996 * 109.49965 * 297.71257 * 17 16 15 19 19 C 1.52999 * 109.50183 * 177.63579 * 17 16 15 20 20 F 1.39898 * 109.47130 * 180.02562 * 19 17 16 21 21 C 1.46931 * 110.98511 * 65.46288 * 13 3 2 22 22 H 1.09002 * 109.46998 * 294.66294 * 1 2 3 23 23 H 1.08999 * 109.47107 * 54.66520 * 1 2 3 24 24 H 1.09002 * 109.46812 * 174.66599 * 1 2 3 25 25 H 1.09002 * 109.47217 * 239.99914 * 2 1 3 26 26 H 1.09009 * 109.47305 * 119.99854 * 2 1 3 27 27 H 0.97005 * 119.99688 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.45963 * 54.14730 * 14 13 3 29 29 H 1.08995 * 109.45442 * 294.17200 * 14 13 3 30 30 H 1.08992 * 109.50572 * 299.23886 * 15 14 13 31 31 H 1.09003 * 109.53362 * 179.14114 * 15 14 13 32 32 H 1.09002 * 109.52450 * 182.43833 * 16 15 14 33 33 H 1.09005 * 109.57556 * 62.27587 * 16 15 14 34 34 H 1.09005 * 109.46780 * 300.07904 * 19 17 16 35 35 H 1.09001 * 109.47226 * 60.07577 * 19 17 16 36 36 H 1.08993 * 109.44919 * 65.84393 * 21 13 3 37 37 H 1.08995 * 109.51486 * 305.84157 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6418 1.9687 -0.8676 5 6 3.5458 1.4429 -0.0599 6 1 4.1177 1.8993 0.7345 7 6 4.1934 0.8605 -1.1288 8 7 3.4970 0.3051 -2.0962 9 14 6.0599 0.8605 -1.2026 10 1 6.6030 1.5427 -0.0007 11 1 6.5538 -0.5394 -1.2422 12 1 6.5070 1.5777 -2.4237 13 7 1.5986 2.1179 1.2276 14 6 1.8691 3.5598 1.1611 15 6 1.2676 4.2499 2.3876 16 6 1.8842 3.6539 3.6561 17 6 1.6303 2.1440 3.6768 18 1 0.5572 1.9559 3.7094 19 6 2.2941 1.5312 4.9116 20 9 2.0622 0.1517 4.9295 21 6 2.2214 1.5141 2.4135 22 1 -0.3633 0.4288 0.9339 23 1 -0.3633 0.5943 -0.8383 24 1 -0.3633 -1.0233 -0.0955 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 3.9526 -0.1043 -2.8484 28 1 1.4216 3.9719 0.2567 29 1 2.9460 3.7266 1.1421 30 1 0.1889 4.0949 2.3999 31 1 1.4814 5.3179 2.3462 32 1 1.4273 4.1121 4.5333 33 1 2.9578 3.8428 3.6639 34 1 3.3672 1.7197 4.8785 35 1 1.8738 1.9813 5.8110 36 1 3.2966 1.6908 2.3885 37 1 2.0297 0.4411 2.4189 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711413108.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:30 Heat of formation + Delta-G solvation = -86.890690 kcal Electronic energy + Delta-G solvation = -17263.480002 eV Core-core repulsion = 14567.371149 eV Total energy + Delta-G solvation = -2696.108853 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.48592 -40.08903 -36.60579 -33.98916 -33.02146 -31.79896 -28.51557 -26.97197 -25.61322 -24.06831 -22.48871 -21.13416 -20.63206 -18.34570 -17.31703 -16.79665 -16.59000 -16.28431 -15.66641 -15.57169 -15.03416 -14.73288 -14.50466 -14.22405 -13.89013 -13.40341 -13.15597 -13.05691 -12.79966 -12.58754 -12.54650 -12.11172 -12.02860 -11.81070 -11.64094 -11.54717 -11.42237 -11.15675 -10.98896 -10.78372 -10.44769 -8.90248 -8.04042 -6.27044 1.33362 1.36224 1.45576 2.37920 3.13475 3.33886 3.72001 3.93136 3.96099 4.20533 4.27336 4.41336 4.54992 4.59809 4.64612 4.72362 4.79739 4.83076 4.90588 4.96713 5.05964 5.08997 5.16467 5.25607 5.33969 5.37089 5.41375 5.50233 5.54974 5.64382 5.78391 6.05453 6.20457 6.39864 6.71800 6.94919 7.43696 8.90742 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.022489 B = 0.009266 C = 0.008916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.754013 B = 3021.048313 C = 3139.520118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 C 0.219 3.781 4 H 0.004 0.996 5 C -0.550 4.550 6 H 0.048 0.952 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.946 3.054 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.280 1.280 13 N -0.530 5.530 14 C 0.059 3.941 15 C -0.106 4.106 16 C -0.104 4.104 17 C -0.114 4.114 18 H 0.083 0.917 19 C 0.066 3.934 20 F -0.238 7.238 21 C 0.074 3.926 22 H 0.055 0.945 23 H 0.035 0.965 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.026 0.974 27 H 0.261 0.739 28 H 0.051 0.949 29 H 0.012 0.988 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.013 0.987 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.531 5.839 11.934 13.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.144 4.144 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.589 4.589 6 H 0.066 0.934 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.772 3.228 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.205 1.205 13 N -0.254 5.254 14 C -0.070 4.070 15 C -0.143 4.143 16 C -0.142 4.142 17 C -0.133 4.133 18 H 0.101 0.899 19 C 0.011 3.989 20 F -0.219 7.219 21 C -0.055 4.055 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.032 0.968 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.028 5.660 11.795 13.689 hybrid contribution 2.088 -0.326 -0.876 2.288 sum -1.940 5.334 10.919 12.306 Atomic orbital electron populations 1.21536 0.96161 0.99556 1.00767 1.21431 0.94575 0.98342 1.00015 1.19051 0.91522 0.91328 0.86960 0.97856 1.21997 0.94020 1.36856 1.06025 0.93361 1.25623 1.01991 0.94963 0.95394 1.70010 1.36331 1.38367 1.10328 0.85697 0.81476 0.77727 0.77885 1.19673 1.20674 1.20538 1.62352 1.57439 1.02653 1.02936 1.21953 0.97377 0.89013 0.98654 1.21539 1.00606 0.99213 0.92980 1.21495 1.01019 0.92834 0.98849 1.21826 1.01289 0.96881 0.93337 0.89875 1.22240 1.02046 0.74989 0.99675 1.92715 1.96388 1.34938 1.97874 1.21841 0.95321 0.98140 0.90184 0.92629 0.94596 0.93775 0.92046 0.95572 0.92941 0.93013 0.97015 0.91127 0.89935 0.88620 0.92358 0.90585 0.87344 0.96844 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 9.71 71.98 0.70 -4.41 16 2 C -0.11 -5.22 5.09 30.59 0.16 -5.06 16 3 C 0.22 11.17 1.73 44.17 0.08 11.25 16 4 H 0.00 0.20 7.99 -2.39 -0.02 0.18 16 5 C -0.55 -30.30 7.23 25.60 0.18 -30.12 16 6 H 0.05 2.68 5.84 -2.91 -0.02 2.67 16 7 C 0.02 1.12 5.30 84.65 0.45 1.57 16 8 N -0.91 -52.83 11.30 21.45 0.24 -52.58 16 9 Si 0.95 44.23 29.54 68.60 2.03 46.26 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 N -0.53 -22.49 4.05 -875.29 -3.54 -26.03 16 14 C 0.06 2.22 5.19 86.33 0.45 2.66 16 15 C -0.11 -2.84 6.09 30.65 0.19 -2.65 16 16 C -0.10 -2.47 5.29 30.68 0.16 -2.30 16 17 C -0.11 -3.25 2.68 -10.74 -0.03 -3.27 16 18 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 19 C 0.07 1.58 6.96 71.98 0.50 2.08 16 20 F -0.24 -7.48 16.86 44.97 0.76 -6.72 16 21 C 0.07 2.90 3.94 86.31 0.34 3.24 16 22 H 0.05 2.19 7.83 -2.39 -0.02 2.17 16 23 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 3.42 6.01 -2.39 -0.01 3.40 16 26 H 0.03 1.30 6.31 -2.38 -0.02 1.28 16 27 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 28 H 0.05 2.02 8.02 -2.39 -0.02 2.01 16 29 H 0.01 0.49 7.27 -2.39 -0.02 0.47 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.11 1.79 8.14 -2.39 -0.02 1.78 16 36 H 0.01 0.59 6.39 -2.39 -0.02 0.57 16 37 H 0.05 2.23 5.85 -2.39 -0.01 2.21 16 Total: -1.00 -61.68 285.37 3.68 -58.00 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.03 Total: 8.10 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 3.17 Total: -27.02 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -3.30 Total: -78.62 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 0.76 Total: -6.72 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -61.68 3.68 -58.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711413108.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.889 kcal (2) G-P(sol) polarization free energy of solvation -61.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds