Wall clock time and date at job start Sun Mar 29 2020 21:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47059 * 2 1 4 4 H 1.08998 * 109.47271 * 56.32725 * 3 2 1 5 5 C 1.50698 * 109.46964 * 176.32897 * 3 2 1 6 6 H 1.08008 * 120.00002 * 119.99681 * 5 3 2 7 7 C 1.37879 * 120.00427 * 299.99930 * 5 3 2 8 8 N 1.31508 * 119.99916 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99514 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47033 * 90.00258 * 9 7 5 11 11 H 1.48505 * 109.46794 * 209.99977 * 9 7 5 12 12 H 1.48500 * 109.47136 * 329.99845 * 9 7 5 13 13 N 1.46902 * 109.47103 * 296.32873 * 3 2 1 14 14 C 1.46844 * 110.99860 * 174.62075 * 13 3 2 15 15 C 1.53043 * 109.51985 * 185.83862 * 14 13 3 16 16 C 1.53111 * 109.27936 * 300.82202 * 15 14 13 17 17 C 1.53119 * 109.16005 * 57.65569 * 16 15 14 18 18 H 1.08998 * 109.53607 * 62.31028 * 17 16 15 19 19 C 1.53006 * 109.50419 * 182.40168 * 17 16 15 20 20 F 1.39905 * 109.47049 * 299.80616 * 19 17 16 21 21 C 1.46849 * 110.99878 * 298.83500 * 13 3 2 22 22 H 1.09000 * 109.46752 * 185.07187 * 1 2 3 23 23 H 1.09004 * 109.47195 * 305.07215 * 1 2 3 24 24 H 1.08999 * 109.46789 * 65.07157 * 1 2 3 25 25 H 1.08997 * 109.47389 * 239.99696 * 2 1 3 26 26 H 1.09004 * 109.47094 * 119.99678 * 2 1 3 27 27 H 0.97007 * 119.99757 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.46418 * 305.85490 * 14 13 3 29 29 H 1.09001 * 109.46345 * 65.82918 * 14 13 3 30 30 H 1.09001 * 109.49850 * 180.87680 * 15 14 13 31 31 H 1.09003 * 109.50177 * 60.76829 * 15 14 13 32 32 H 1.08998 * 109.52607 * 297.74948 * 16 15 14 33 33 H 1.09006 * 109.57359 * 177.59106 * 16 15 14 34 34 H 1.09007 * 109.46566 * 59.80247 * 19 17 16 35 35 H 1.08991 * 109.47457 * 179.80335 * 19 17 16 36 36 H 1.08996 * 109.46065 * 294.17345 * 21 13 3 37 37 H 1.08997 * 109.46237 * 54.14119 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6239 1.9750 0.8552 5 6 3.5442 1.4434 0.0910 6 1 4.1325 1.8940 -0.6948 7 6 4.1697 0.8691 1.1773 8 7 5.4823 0.8704 1.2568 9 14 3.1522 0.0891 2.5359 10 1 2.9247 -1.3446 2.2230 11 1 3.8780 0.2050 3.8264 12 1 1.8454 0.7869 2.6385 13 7 1.6241 2.1089 -1.2413 14 6 1.9857 3.5320 -1.2212 15 6 1.4111 4.2232 -2.4599 16 6 1.9703 3.5530 -3.7179 17 6 1.6215 2.0623 -3.6904 18 1 0.5383 1.9411 -3.7041 19 6 2.2280 1.3731 -4.9144 20 9 1.7078 1.9482 -6.0789 21 6 2.1900 1.4337 -2.4162 22 1 -0.3633 -1.0237 0.0909 23 1 -0.3634 0.5905 0.8411 24 1 -0.3633 0.4331 -0.9319 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 5.9223 0.4660 2.0209 28 1 1.5784 3.9976 -0.3238 29 1 3.0712 3.6309 -1.2209 30 1 1.6928 5.2761 -2.4526 31 1 0.3245 4.1366 -2.4538 32 1 3.0533 3.6732 -3.7439 33 1 1.5312 4.0136 -4.6029 34 1 3.3110 1.4959 -4.9010 35 1 1.9824 0.3114 -4.8926 36 1 3.2745 1.5425 -2.4102 37 1 1.9311 0.3753 -2.3865 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711413114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:34 Heat of formation + Delta-G solvation = -63.600472 kcal Electronic energy + Delta-G solvation = -17216.405149 eV Core-core repulsion = 14521.306236 eV Total energy + Delta-G solvation = -2695.098914 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.41191 -38.73044 -35.12571 -32.12457 -31.84444 -30.57581 -27.14095 -25.71862 -23.70870 -22.58155 -21.25151 -19.76581 -19.10658 -16.76739 -15.90001 -15.66649 -15.43090 -14.82534 -14.29003 -14.10289 -13.48115 -13.39557 -13.00677 -12.82544 -12.57802 -12.12753 -11.76619 -11.63079 -11.28666 -11.05487 -10.95235 -10.65610 -10.54953 -10.49003 -10.17081 -9.97611 -9.77788 -9.58095 -9.47443 -9.23025 -8.59795 -7.18349 -6.15293 -4.16084 3.22965 3.34543 3.36434 4.34293 4.60069 4.91079 5.06526 5.13184 5.20515 5.26441 5.50610 5.59249 5.76227 5.92679 5.96934 6.00076 6.02661 6.12281 6.18710 6.24522 6.32571 6.40630 6.45026 6.61961 6.66553 6.70397 6.76698 6.86072 6.90953 7.07193 7.21929 7.53637 8.07747 8.13410 8.41512 8.86507 9.48366 10.97438 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.031042 B = 0.008326 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.779354 B = 3362.003699 C = 3477.096564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.181 3.819 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.264 1.264 13 N -0.524 5.524 14 C 0.061 3.939 15 C -0.114 4.114 16 C -0.113 4.113 17 C -0.117 4.117 18 H 0.081 0.919 19 C 0.065 3.935 20 F -0.224 7.224 21 C 0.066 3.934 22 H 0.032 0.968 23 H 0.043 0.957 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.264 0.736 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.925 1.620 -7.514 11.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C 0.074 3.926 4 H 0.057 0.943 5 C -0.583 4.583 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.248 5.248 14 C -0.068 4.068 15 C -0.152 4.152 16 C -0.150 4.150 17 C -0.136 4.136 18 H 0.100 0.900 19 C 0.009 3.991 20 F -0.205 7.205 21 C -0.063 4.063 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.292 1.558 -7.451 11.256 hybrid contribution 0.598 -0.492 0.886 1.176 sum -7.694 1.066 -6.565 10.170 Atomic orbital electron populations 1.21719 0.97296 0.99192 1.01745 1.21960 0.94106 0.99363 1.00631 1.19719 0.94362 0.90387 0.88175 0.94307 1.21619 0.90487 1.38614 1.07621 0.90635 1.24987 0.94704 0.95369 0.97846 1.69914 1.08152 1.44864 1.30607 0.86853 0.80505 0.79855 0.81029 1.20556 1.22604 1.18866 1.62268 1.58152 1.01586 1.02781 1.21888 0.98927 0.89357 0.96584 1.21584 1.00662 0.98230 0.94712 1.21555 1.00755 0.94691 0.98014 1.21824 1.01560 0.95916 0.94343 0.90028 1.22046 0.98787 0.97306 0.80913 1.92718 1.89113 1.87113 1.51548 1.21851 0.97890 0.97950 0.88566 0.94861 0.93805 0.92149 0.92239 0.93541 0.92654 0.91816 0.93949 0.92347 0.91874 0.92269 0.92269 0.90878 0.90896 0.93551 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.73 37.16 0.36 -2.16 16 2 C -0.12 -2.58 4.70 -26.73 -0.13 -2.71 16 3 C 0.18 4.09 1.35 -68.87 -0.09 4.00 16 4 H 0.04 0.93 7.13 -51.93 -0.37 0.56 16 5 C -0.54 -14.48 7.77 -34.44 -0.27 -14.75 16 6 H 0.08 2.19 6.08 -52.48 -0.32 1.87 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 9 Si 0.89 21.55 24.40 -169.99 -4.15 17.40 16 10 H -0.28 -6.62 6.84 56.52 0.39 -6.24 16 11 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.26 -6.16 6.53 56.52 0.37 -5.79 16 13 N -0.52 -10.24 4.13 -228.08 -0.94 -11.18 16 14 C 0.06 1.13 5.13 -3.83 -0.02 1.11 16 15 C -0.11 -1.71 6.09 -26.65 -0.16 -1.88 16 16 C -0.11 -1.65 5.13 -26.61 -0.14 -1.78 16 17 C -0.12 -1.75 2.68 -90.54 -0.24 -1.99 16 18 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 19 C 0.06 0.86 6.96 37.16 0.26 1.12 16 20 F -0.22 -3.27 16.90 2.25 0.04 -3.23 16 21 C 0.07 1.19 4.08 -3.83 -0.02 1.17 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 1.02 7.86 -51.93 -0.41 0.62 16 25 H 0.06 1.22 6.12 -51.93 -0.32 0.90 16 26 H 0.05 1.05 3.22 -51.93 -0.17 0.88 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 29 H 0.04 0.88 6.99 -51.93 -0.36 0.52 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.81 7.88 -51.93 -0.41 0.40 16 34 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.95 6.60 -51.93 -0.34 0.61 16 37 H 0.07 1.28 5.97 -51.93 -0.31 0.97 16 LS Contribution 278.31 15.07 4.19 4.19 Total: -1.00 -28.34 278.31 -6.62 -34.96 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.99 Total: -0.22 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.54 Total: -15.91 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.17 Total: -37.20 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.04 Total: -3.23 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.15 Total: 17.40 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.34 -6.62 -34.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711413114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.640 kcal (2) G-P(sol) polarization free energy of solvation -28.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds