Wall clock time and date at job start Sun Mar 29 2020 21:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47059 * 2 1 4 4 H 1.08998 * 109.47271 * 56.32725 * 3 2 1 5 5 C 1.50698 * 109.46964 * 176.32897 * 3 2 1 6 6 H 1.08008 * 120.00002 * 119.99681 * 5 3 2 7 7 C 1.37879 * 120.00427 * 299.99930 * 5 3 2 8 8 N 1.31508 * 119.99916 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99514 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47033 * 90.00258 * 9 7 5 11 11 H 1.48505 * 109.46794 * 209.99977 * 9 7 5 12 12 H 1.48500 * 109.47136 * 329.99845 * 9 7 5 13 13 N 1.46902 * 109.47103 * 296.32873 * 3 2 1 14 14 C 1.46844 * 110.99860 * 174.62075 * 13 3 2 15 15 C 1.53043 * 109.51985 * 185.83862 * 14 13 3 16 16 C 1.53111 * 109.27936 * 300.82202 * 15 14 13 17 17 C 1.53119 * 109.16005 * 57.65569 * 16 15 14 18 18 H 1.08998 * 109.53607 * 62.31028 * 17 16 15 19 19 C 1.53006 * 109.50419 * 182.40168 * 17 16 15 20 20 F 1.39905 * 109.47049 * 299.80616 * 19 17 16 21 21 C 1.46849 * 110.99878 * 298.83500 * 13 3 2 22 22 H 1.09000 * 109.46752 * 185.07187 * 1 2 3 23 23 H 1.09004 * 109.47195 * 305.07215 * 1 2 3 24 24 H 1.08999 * 109.46789 * 65.07157 * 1 2 3 25 25 H 1.08997 * 109.47389 * 239.99696 * 2 1 3 26 26 H 1.09004 * 109.47094 * 119.99678 * 2 1 3 27 27 H 0.97007 * 119.99757 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.46418 * 305.85490 * 14 13 3 29 29 H 1.09001 * 109.46345 * 65.82918 * 14 13 3 30 30 H 1.09001 * 109.49850 * 180.87680 * 15 14 13 31 31 H 1.09003 * 109.50177 * 60.76829 * 15 14 13 32 32 H 1.08998 * 109.52607 * 297.74948 * 16 15 14 33 33 H 1.09006 * 109.57359 * 177.59106 * 16 15 14 34 34 H 1.09007 * 109.46566 * 59.80247 * 19 17 16 35 35 H 1.08991 * 109.47457 * 179.80335 * 19 17 16 36 36 H 1.08996 * 109.46065 * 294.17345 * 21 13 3 37 37 H 1.08997 * 109.46237 * 54.14119 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6239 1.9750 0.8552 5 6 3.5442 1.4434 0.0910 6 1 4.1325 1.8940 -0.6948 7 6 4.1697 0.8691 1.1773 8 7 5.4823 0.8704 1.2568 9 14 3.1522 0.0891 2.5359 10 1 2.9247 -1.3446 2.2230 11 1 3.8780 0.2050 3.8264 12 1 1.8454 0.7869 2.6385 13 7 1.6241 2.1089 -1.2413 14 6 1.9857 3.5320 -1.2212 15 6 1.4111 4.2232 -2.4599 16 6 1.9703 3.5530 -3.7179 17 6 1.6215 2.0623 -3.6904 18 1 0.5383 1.9411 -3.7041 19 6 2.2280 1.3731 -4.9144 20 9 1.7078 1.9482 -6.0789 21 6 2.1900 1.4337 -2.4162 22 1 -0.3633 -1.0237 0.0909 23 1 -0.3634 0.5905 0.8411 24 1 -0.3633 0.4331 -0.9319 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 5.9223 0.4660 2.0209 28 1 1.5784 3.9976 -0.3238 29 1 3.0712 3.6309 -1.2209 30 1 1.6928 5.2761 -2.4526 31 1 0.3245 4.1366 -2.4538 32 1 3.0533 3.6732 -3.7439 33 1 1.5312 4.0136 -4.6029 34 1 3.3110 1.4959 -4.9010 35 1 1.9824 0.3114 -4.8926 36 1 3.2745 1.5425 -2.4102 37 1 1.9311 0.3753 -2.3865 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711413114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:33 Heat of formation + Delta-G solvation = -81.381000 kcal Electronic energy + Delta-G solvation = -17217.176171 eV Core-core repulsion = 14521.306236 eV Total energy + Delta-G solvation = -2695.869935 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.53025 -40.25050 -36.70256 -34.16509 -33.25937 -31.98229 -28.98805 -26.97770 -25.38833 -24.14871 -22.60488 -21.31615 -20.71227 -18.68039 -17.50903 -16.85385 -16.66153 -16.35557 -15.72388 -15.63764 -15.20174 -14.91640 -14.48442 -14.37496 -14.06849 -13.73690 -13.38710 -13.14425 -12.88962 -12.61029 -12.42652 -12.13942 -12.09290 -11.85377 -11.64152 -11.51215 -11.37978 -11.26152 -11.01711 -10.94627 -10.65966 -8.90615 -8.32147 -6.35999 1.29169 1.35130 1.45151 2.29987 3.03540 3.16518 3.73891 3.79304 3.93153 4.11109 4.27957 4.33622 4.38381 4.44549 4.45518 4.65051 4.65230 4.71016 4.84422 4.93186 4.99616 5.00373 5.10899 5.13115 5.16509 5.26247 5.28549 5.34433 5.46392 5.48663 5.57251 5.63350 6.16354 6.40321 6.51793 6.72827 7.32487 8.84143 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.031042 B = 0.008326 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.779354 B = 3362.003699 C = 3477.096564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.184 3.816 4 H 0.029 0.971 5 C -0.536 4.536 6 H 0.036 0.964 7 C 0.015 3.985 8 N -0.948 5.948 9 Si 0.947 3.053 10 H -0.266 1.266 11 H -0.303 1.303 12 H -0.246 1.246 13 N -0.515 5.515 14 C 0.059 3.941 15 C -0.104 4.104 16 C -0.112 4.112 17 C -0.108 4.108 18 H 0.092 0.908 19 C 0.068 3.932 20 F -0.227 7.227 21 C 0.070 3.930 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.033 0.967 27 H 0.264 0.736 28 H 0.062 0.938 29 H 0.007 0.993 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.012 0.988 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.584 1.234 -8.162 13.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.161 4.161 3 C 0.075 3.925 4 H 0.047 0.953 5 C -0.575 4.575 6 H 0.054 0.946 7 C -0.182 4.182 8 N -0.588 5.588 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.231 1.231 12 H -0.170 1.170 13 N -0.238 5.238 14 C -0.069 4.069 15 C -0.142 4.142 16 C -0.150 4.150 17 C -0.128 4.128 18 H 0.110 0.890 19 C 0.012 3.988 20 F -0.208 7.208 21 C -0.058 4.058 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.025 0.975 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.030 0.970 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.977 1.179 -8.123 13.707 hybrid contribution 1.488 -0.302 1.017 1.828 sum -9.489 0.877 -7.106 11.887 Atomic orbital electron populations 1.21632 0.94190 1.00906 1.02308 1.21885 0.96818 0.97355 1.00040 1.19615 0.91322 0.92078 0.89470 0.95282 1.21882 0.92756 1.36806 1.06042 0.94606 1.25816 0.95596 0.96326 1.00507 1.70065 1.10124 1.46921 1.31708 0.85877 0.79475 0.79633 0.77583 1.19264 1.23124 1.16997 1.62322 1.57415 1.01949 1.02100 1.21952 0.96973 0.89284 0.98731 1.21525 1.01139 0.98774 0.92725 1.21571 1.00201 0.94676 0.98558 1.21732 1.01917 0.95939 0.93172 0.88988 1.22037 0.98712 0.98107 0.79903 1.92713 1.89173 1.87303 1.51653 1.21830 0.95935 0.98466 0.89590 0.92491 0.93721 0.91219 0.92174 0.94859 0.92731 0.91987 0.97489 0.90556 0.90483 0.93448 0.90360 0.90809 0.88959 0.96973 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.73 71.98 0.70 -3.56 16 2 C -0.12 -4.95 4.70 30.59 0.14 -4.81 16 3 C 0.18 8.23 1.35 44.17 0.06 8.29 16 4 H 0.03 1.37 7.13 -2.39 -0.02 1.36 16 5 C -0.54 -29.40 7.77 25.60 0.20 -29.20 16 6 H 0.04 2.21 6.08 -2.91 -0.02 2.19 16 7 C 0.02 0.88 5.45 84.66 0.46 1.34 16 8 N -0.95 -58.67 13.96 21.45 0.30 -58.37 16 9 Si 0.95 44.52 24.40 68.60 1.67 46.20 16 10 H -0.27 -11.94 6.84 99.48 0.68 -11.26 16 11 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 12 H -0.25 -10.76 6.53 99.48 0.65 -10.11 16 13 N -0.51 -19.74 4.13 -875.53 -3.61 -23.36 16 14 C 0.06 2.19 5.13 86.33 0.44 2.63 16 15 C -0.10 -2.92 6.09 30.65 0.19 -2.73 16 16 C -0.11 -3.09 5.13 30.67 0.16 -2.93 16 17 C -0.11 -3.02 2.68 -10.74 -0.03 -3.05 16 18 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 19 C 0.07 1.66 6.96 71.98 0.50 2.16 16 20 F -0.23 -6.04 16.90 44.97 0.76 -5.28 16 21 C 0.07 2.49 4.08 86.32 0.35 2.85 16 22 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.07 2.10 7.86 -2.39 -0.02 2.08 16 25 H 0.06 2.38 6.12 -2.39 -0.01 2.36 16 26 H 0.03 1.43 3.22 -2.39 -0.01 1.42 16 27 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 28 H 0.06 2.28 8.07 -2.39 -0.02 2.26 16 29 H 0.01 0.30 6.99 -2.39 -0.02 0.28 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.90 7.88 -2.38 -0.02 1.88 16 34 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.01 0.51 6.60 -2.39 -0.02 0.50 16 37 H 0.08 2.59 5.97 -2.39 -0.01 2.58 16 Total: -1.00 -62.27 278.31 3.24 -59.03 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.95 Total: 10.78 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 3.18 Total: -29.00 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -3.32 Total: -81.73 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 0.76 Total: -5.28 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.67 Total: 46.20 kcal Total: -62.27 3.24 -59.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711413114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.351 kcal (2) G-P(sol) polarization free energy of solvation -62.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds