Wall clock time and date at job start Sun Mar 29 2020 21:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47342 * 2 1 4 4 C 1.53000 * 109.47217 * 240.00283 * 2 1 3 5 5 C 1.50704 * 109.47284 * 175.00166 * 4 2 1 6 6 H 1.07997 * 119.99432 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00079 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99747 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00004 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46931 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47010 * 120.00162 * 9 7 5 12 12 H 1.48505 * 109.47051 * 240.00008 * 9 7 5 13 13 N 1.46900 * 109.47193 * 120.00199 * 2 1 3 14 14 C 1.46929 * 110.98461 * 59.22949 * 13 2 1 15 15 C 1.53037 * 109.47910 * 174.18240 * 14 13 2 16 16 C 1.53114 * 109.31211 * 59.15772 * 15 14 13 17 17 C 1.53126 * 109.16239 * 302.32855 * 16 15 14 18 18 H 1.09006 * 109.49902 * 297.71480 * 17 16 15 19 19 C 1.53001 * 109.50609 * 177.63506 * 17 16 15 20 20 F 1.39903 * 109.46946 * 64.99595 * 19 17 16 21 21 C 1.46850 * 110.99740 * 295.00164 * 13 2 1 22 22 H 1.08995 * 109.47580 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47497 * 299.99939 * 1 2 3 24 24 H 1.09010 * 109.46985 * 59.99752 * 1 2 3 25 25 H 1.09002 * 109.47116 * 295.00206 * 4 2 1 26 26 H 1.09002 * 109.47089 * 55.00041 * 4 2 1 27 27 H 0.97002 * 119.99740 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.51866 * 54.15475 * 14 13 2 29 29 H 1.09007 * 109.45009 * 294.16157 * 14 13 2 30 30 H 1.09002 * 109.50283 * 299.19589 * 15 14 13 31 31 H 1.09003 * 109.50113 * 179.11776 * 15 14 13 32 32 H 1.09006 * 109.52545 * 62.23190 * 16 15 14 33 33 H 1.08997 * 109.52864 * 182.35913 * 16 15 14 34 34 H 1.08999 * 109.46986 * 184.99962 * 19 17 16 35 35 H 1.08998 * 109.46928 * 304.99736 * 19 17 16 36 36 H 1.08997 * 109.46198 * 65.82029 * 21 13 2 37 37 H 1.08995 * 109.45893 * 305.84904 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0855 -0.5396 7 6 4.2305 -1.1935 -2.3578 8 7 3.5764 -1.8377 -3.2995 9 14 6.0921 -1.0611 -2.4368 10 1 6.5835 -0.2898 -1.2669 11 1 6.6863 -2.4218 -2.4184 12 1 6.4862 -0.3658 -3.6885 13 7 2.0197 -0.6925 1.1994 14 6 1.5334 -2.0784 1.2422 15 6 2.1776 -2.8090 2.4225 16 6 1.8221 -2.0827 3.7227 17 6 2.2964 -0.6295 3.6325 18 1 3.3809 -0.6067 3.5253 19 6 1.8929 0.1195 4.9041 20 9 2.5715 -0.4236 6.0004 21 6 1.6488 0.0388 2.4176 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.7516 -1.7715 -1.2057 26 1 1.6054 -0.2616 -2.1370 27 1 4.0608 -2.2444 -4.0350 28 1 1.7963 -2.5854 0.3139 29 1 0.4499 -2.0793 1.3621 30 1 3.2602 -2.8205 2.2964 31 1 1.8051 -3.8326 2.4640 32 1 0.7422 -2.1049 3.8690 33 1 2.3135 -2.5757 4.5615 34 1 2.1514 1.1735 4.8025 35 1 0.8182 0.0222 5.0575 36 1 0.5649 0.0280 2.5319 37 1 1.9956 1.0694 2.3422 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711429515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:23 Heat of formation + Delta-G solvation = -70.207597 kcal Electronic energy + Delta-G solvation = -16873.104300 eV Core-core repulsion = 14177.718880 eV Total energy + Delta-G solvation = -2695.385420 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.56904 -39.02911 -35.12957 -32.49565 -31.52782 -29.72800 -27.33082 -25.90027 -24.04202 -22.60011 -22.03454 -19.78066 -18.58498 -16.16583 -15.98235 -15.76075 -15.73386 -14.62730 -14.45562 -14.26905 -13.96540 -13.49290 -13.27582 -12.62900 -12.37753 -12.08671 -11.78299 -11.49732 -11.42081 -11.15961 -10.97429 -10.81676 -10.55301 -10.47661 -10.33542 -10.17701 -9.94156 -9.78305 -9.13906 -8.95545 -8.26096 -7.46894 -5.89359 -3.87112 3.38083 3.45746 3.51447 4.32283 4.56487 4.69931 4.89495 4.95597 5.02630 5.32072 5.39310 5.48298 5.57758 5.65311 5.76029 5.82533 5.86416 5.89405 5.96868 6.06422 6.07510 6.22105 6.25185 6.40813 6.46998 6.62236 6.70790 6.79129 6.97269 7.54398 7.69232 7.92373 8.02524 8.12583 8.57568 9.19447 9.74919 11.22644 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.028372 B = 0.007300 C = 0.006608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.658044 B = 3834.767112 C = 4236.172732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.070 0.930 4 C 0.027 3.973 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.509 5.509 14 C 0.054 3.946 15 C -0.116 4.116 16 C -0.112 4.112 17 C -0.118 4.118 18 H 0.091 0.909 19 C 0.067 3.933 20 F -0.221 7.221 21 C 0.061 3.939 22 H 0.052 0.948 23 H 0.039 0.961 24 H 0.055 0.945 25 H 0.021 0.979 26 H 0.019 0.981 27 H 0.257 0.743 28 H 0.092 0.908 29 H 0.022 0.978 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.027 0.973 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.850 2.034 13.049 14.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.088 0.912 4 C -0.010 4.010 5 C -0.528 4.528 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.233 5.233 14 C -0.074 4.074 15 C -0.153 4.153 16 C -0.150 4.150 17 C -0.137 4.137 18 H 0.109 0.891 19 C 0.012 3.988 20 F -0.202 7.202 21 C -0.068 4.068 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.039 0.961 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.110 0.890 29 H 0.040 0.960 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.286 1.918 12.885 14.059 hybrid contribution 0.138 0.021 -0.086 0.163 sum -5.148 1.939 12.800 13.932 Atomic orbital electron populations 1.22528 0.99869 1.01291 1.00646 1.21914 0.89972 0.98427 0.91764 0.91222 1.19252 0.96453 0.95404 0.89858 1.21217 0.91764 1.32861 1.06974 0.92049 1.25008 0.98026 0.95885 0.95992 1.69975 1.35125 1.37036 1.12373 0.86583 0.86442 0.77576 0.77669 1.19763 1.21330 1.21409 1.62004 1.59295 1.01370 1.00586 1.22139 0.95523 0.90078 0.99621 1.21571 1.02189 0.97857 0.93722 1.21591 1.00222 0.94781 0.98412 1.21800 1.02854 0.95771 0.93284 0.89110 1.22022 0.96154 0.97682 0.82989 1.92740 1.82634 1.88258 1.56540 1.21955 0.96765 0.97720 0.90330 0.92943 0.94153 0.92547 0.96122 0.96329 0.93377 0.88967 0.96014 0.90873 0.92115 0.92667 0.91949 0.90866 0.91218 0.95456 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 8.50 37.16 0.32 -2.80 16 2 C 0.09 1.74 2.30 -67.71 -0.16 1.58 16 3 H 0.07 1.42 8.08 -51.93 -0.42 1.00 16 4 C 0.03 0.68 4.27 -27.88 -0.12 0.56 16 5 C -0.49 -13.61 8.84 -34.44 -0.30 -13.92 16 6 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 9 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 13 N -0.51 -9.45 4.36 -226.62 -0.99 -10.43 16 14 C 0.05 0.96 4.65 -3.79 -0.02 0.94 16 15 C -0.12 -1.76 6.09 -26.65 -0.16 -1.92 16 16 C -0.11 -1.49 5.18 -26.61 -0.14 -1.63 16 17 C -0.12 -1.59 2.65 -90.54 -0.24 -1.83 16 18 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 19 C 0.07 0.75 6.91 37.16 0.26 1.00 16 20 F -0.22 -2.94 17.09 2.25 0.04 -2.90 16 21 C 0.06 0.90 4.31 -3.83 -0.02 0.89 16 22 H 0.05 0.89 6.52 -51.93 -0.34 0.55 16 23 H 0.04 0.59 6.65 -51.93 -0.35 0.25 16 24 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 25 H 0.02 0.55 6.05 -51.93 -0.31 0.23 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.09 1.91 5.94 -51.93 -0.31 1.60 16 29 H 0.02 0.36 6.62 -51.92 -0.34 0.02 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.80 8.00 -51.93 -0.42 0.38 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.38 6.73 -51.93 -0.35 0.03 16 37 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 LS Contribution 288.60 15.07 4.35 4.35 Total: -1.00 -29.59 288.60 -7.74 -37.33 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -6.18 Total: -3.20 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -0.68 Total: -15.78 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.25 Total: -36.83 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.59 -7.74 -37.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711429515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.876 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds