Wall clock time and date at job start Sun Mar 29 2020 21:40:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09000 * 109.46799 * 2 1
4 4 C 1.53000 * 109.47287 * 120.00423 * 2 1 3
5 5 C 1.50697 * 109.47079 * 184.00266 * 4 2 1
6 6 H 1.08002 * 120.00148 * 359.97438 * 5 4 2
7 7 C 1.37876 * 119.99918 * 179.97438 * 5 4 2
8 8 N 1.31515 * 119.99961 * 359.72320 * 7 5 4
9 9 Si 1.86797 * 120.00029 * 180.02562 * 7 5 4
10 10 H 1.48501 * 109.47322 * 59.99967 * 9 7 5
11 11 H 1.48505 * 109.47171 * 179.97438 * 9 7 5
12 12 H 1.48499 * 109.47348 * 300.00116 * 9 7 5
13 13 N 1.46901 * 109.47183 * 240.00371 * 2 1 3
14 14 C 1.46847 * 110.99761 * 306.40255 * 13 2 1
15 15 C 1.53039 * 109.52368 * 185.83897 * 14 13 2
16 16 C 1.53118 * 109.27986 * 300.82044 * 15 14 13
17 17 C 1.53123 * 109.16148 * 57.64883 * 16 15 14
18 18 H 1.09004 * 109.50107 * 62.29148 * 17 16 15
19 19 C 1.52998 * 109.50410 * 182.40543 * 17 16 15
20 20 F 1.39898 * 109.47249 * 184.80102 * 19 17 16
21 21 C 1.46850 * 110.99940 * 70.60920 * 13 2 1
22 22 H 1.08996 * 109.46912 * 59.99617 * 1 2 3
23 23 H 1.08997 * 109.47103 * 179.97438 * 1 2 3
24 24 H 1.09000 * 109.46750 * 299.99891 * 1 2 3
25 25 H 1.08997 * 109.47056 * 63.99869 * 4 2 1
26 26 H 1.09004 * 109.46790 * 304.00348 * 4 2 1
27 27 H 0.96997 * 119.99963 * 180.02562 * 8 7 5
28 28 H 1.08997 * 109.46395 * 305.84906 * 14 13 2
29 29 H 1.08998 * 109.46515 * 65.82207 * 14 13 2
30 30 H 1.09000 * 109.50647 * 180.87511 * 15 14 13
31 31 H 1.09004 * 109.50370 * 60.75579 * 15 14 13
32 32 H 1.09001 * 109.52353 * 297.75183 * 16 15 14
33 33 H 1.08999 * 109.57823 * 177.59057 * 16 15 14
34 34 H 1.08993 * 109.47432 * 304.81000 * 19 17 16
35 35 H 1.09000 * 109.46803 * 64.80928 * 19 17 16
36 36 H 1.09003 * 109.46427 * 294.17384 * 21 13 2
37 37 H 1.08991 * 109.46340 * 54.15752 * 21 13 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7213 1.2492
5 6 3.5438 -0.6360 1.2997
6 1 4.0819 -0.1193 0.5187
7 6 4.2326 -1.2175 2.3430
8 7 3.5769 -1.8420 3.2968
9 14 6.0964 -1.1111 2.4060
10 1 6.5096 0.3144 2.4538
11 1 6.5914 -1.8103 3.6191
12 1 6.6701 -1.7524 1.1957
13 7 2.0197 -0.6924 -1.1995
14 6 1.4280 -2.0317 -1.3124
15 6 2.0676 -2.7760 -2.4867
16 6 1.8328 -1.9836 -3.7757
17 6 2.4156 -0.5769 -3.6141
18 1 3.4922 -0.6448 -3.4578
19 6 2.1324 0.2413 -4.8756
20 9 2.7583 1.4882 -4.7729
21 6 1.7660 0.1037 -2.4071
22 1 -0.3633 0.5139 -0.8899
23 1 -0.3633 -1.0276 -0.0005
24 1 -0.3633 0.5138 0.8900
25 1 1.7364 -1.7676 1.2140
26 1 1.6193 -0.2506 2.1377
27 1 4.0615 -2.2507 4.0310
28 1 1.6058 -2.5861 -0.3909
29 1 0.3549 -1.9416 -1.4806
30 1 1.6172 -3.7643 -2.5798
31 1 3.1387 -2.8785 -2.3126
32 1 0.7626 -1.9142 -3.9708
33 1 2.3229 -2.4876 -4.6087
34 1 2.5183 -0.2884 -5.7465
35 1 1.0570 0.3824 -4.9832
36 1 0.6912 0.1836 -2.5703
37 1 2.1893 1.1000 -2.2808
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000711429519.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:40:26
Heat of formation + Delta-G solvation = -70.307784 kcal
Electronic energy + Delta-G solvation = -16923.843215 eV
Core-core repulsion = 14228.453450 eV
Total energy + Delta-G solvation = -2695.389765 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 229.154 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-47.52055 -39.00087 -35.17483 -32.49665 -31.38095 -29.80139 -27.26922 -25.90065
-24.07662 -22.64392 -21.92908 -19.76905 -18.60578 -16.13621 -15.96536 -15.84917
-15.57572 -14.63257 -14.43337 -14.25538 -13.96025 -13.56871 -13.14676 -12.54191
-12.38379 -12.04085 -11.77341 -11.53900 -11.42389 -11.22908 -10.90175 -10.68451
-10.55703 -10.49655 -10.35726 -10.22396 -9.94895 -9.77718 -9.12282 -8.94010
-8.22435 -7.42446 -5.85813 -3.83252 3.43367 3.46610 3.50885 4.38056
4.59238 4.67956 4.85051 4.94514 5.01953 5.22332 5.46161 5.51102
5.62408 5.64570 5.75270 5.81311 5.84176 5.88076 5.97302 6.05567
6.10437 6.17886 6.29982 6.39366 6.48255 6.62067 6.68114 6.77305
7.02276 7.58020 7.71823 7.96242 8.06368 8.16029 8.61981 9.22647
9.78240 11.26226
Molecular weight = 229.15amu
Principal moments of inertia in cm(-1)
A = 0.025799 B = 0.007678 C = 0.007112
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1085.043117 B = 3645.836115 C = 3936.243040
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.087 3.913
3 H 0.069 0.931
4 C 0.031 3.969
5 C -0.489 4.489
6 H 0.060 0.940
7 C 0.050 3.950
8 N -0.905 5.905
9 Si 0.890 3.110
10 H -0.279 1.279
11 H -0.291 1.291
12 H -0.278 1.278
13 N -0.509 5.509
14 C 0.055 3.945
15 C -0.115 4.115
16 C -0.110 4.110
17 C -0.119 4.119
18 H 0.091 0.909
19 C 0.068 3.932
20 F -0.219 7.219
21 C 0.060 3.940
22 H 0.038 0.962
23 H 0.053 0.947
24 H 0.055 0.945
25 H 0.019 0.981
26 H 0.018 0.982
27 H 0.257 0.743
28 H 0.088 0.912
29 H 0.022 0.978
30 H 0.061 0.939
31 H 0.073 0.927
32 H 0.057 0.943
33 H 0.060 0.940
34 H 0.071 0.929
35 H 0.069 0.931
36 H 0.024 0.976
37 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.658 0.559 -14.283 15.373
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.242 4.242
2 C -0.021 4.021
3 H 0.087 0.913
4 C -0.006 4.006
5 C -0.527 4.527
6 H 0.078 0.922
7 C -0.149 4.149
8 N -0.546 5.546
9 Si 0.718 3.282
10 H -0.205 1.205
11 H -0.217 1.217
12 H -0.204 1.204
13 N -0.232 5.232
14 C -0.073 4.073
15 C -0.153 4.153
16 C -0.148 4.148
17 C -0.138 4.138
18 H 0.109 0.891
19 C 0.013 3.987
20 F -0.200 7.200
21 C -0.069 4.069
22 H 0.057 0.943
23 H 0.072 0.928
24 H 0.074 0.926
25 H 0.037 0.963
26 H 0.036 0.964
27 H 0.067 0.933
28 H 0.106 0.894
29 H 0.041 0.959
30 H 0.080 0.920
31 H 0.092 0.908
32 H 0.075 0.925
33 H 0.079 0.921
34 H 0.090 0.910
35 H 0.087 0.913
36 H 0.042 0.958
37 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -5.100 0.441 -14.058 14.961
hybrid contribution 0.157 0.145 0.040 0.217
sum -4.944 0.587 -14.019 14.876
Atomic orbital electron populations
1.22520 0.99841 1.01277 1.00597 1.21917 0.89998 0.98345 0.91847
0.91308 1.19190 0.96373 0.95277 0.89786 1.21141 0.91664 1.33264
1.06671 0.92181 1.25001 0.97982 0.95968 0.95952 1.69954 1.35218
1.37546 1.11912 0.86696 0.86443 0.78004 0.77021 1.20512 1.21694
1.20397 1.61990 1.58468 1.01750 1.00998 1.22094 0.94841 0.91106
0.99263 1.21564 1.02442 0.97536 0.93778 1.21516 1.00171 0.94661
0.98428 1.21821 1.02934 0.95147 0.93898 0.89054 1.22045 0.97328
0.80307 0.99055 1.92759 1.84858 1.44849 1.97523 1.22051 0.96982
0.97443 0.90393 0.94282 0.92847 0.92557 0.96321 0.96382 0.93308
0.89409 0.95946 0.92038 0.90786 0.92457 0.92097 0.91029 0.91283
0.95792 0.90919
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.20 8.44 37.16 0.31 -2.89 16
2 C 0.09 1.79 2.26 -67.71 -0.15 1.64 16
3 H 0.07 1.47 7.98 -51.93 -0.41 1.05 16
4 C 0.03 0.79 4.37 -27.88 -0.12 0.66 16
5 C -0.49 -13.83 8.81 -34.44 -0.30 -14.13 16
6 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16
7 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16
8 N -0.91 -27.44 13.29 55.43 0.74 -26.71 16
9 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16
10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
13 N -0.51 -9.72 4.29 -226.69 -0.97 -10.70 16
14 C 0.05 0.96 4.53 -3.83 -0.02 0.94 16
15 C -0.12 -1.67 6.09 -26.65 -0.16 -1.84 16
16 C -0.11 -1.33 5.29 -26.61 -0.14 -1.47 16
17 C -0.12 -1.60 2.65 -90.54 -0.24 -1.84 16
18 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16
19 C 0.07 0.76 6.91 37.16 0.26 1.02 16
20 F -0.22 -3.10 17.05 2.25 0.04 -3.06 16
21 C 0.06 0.96 4.33 -3.83 -0.02 0.94 16
22 H 0.04 0.61 6.84 -51.93 -0.35 0.25 16
23 H 0.05 0.92 6.45 -51.93 -0.34 0.58 16
24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
25 H 0.02 0.50 6.28 -51.93 -0.33 0.18 16
26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
28 H 0.09 1.78 6.17 -51.93 -0.32 1.46 16
29 H 0.02 0.37 6.57 -51.93 -0.34 0.02 16
30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16
32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
36 H 0.02 0.36 6.90 -51.93 -0.36 0.00 16
37 H 0.07 1.23 7.82 -51.93 -0.41 0.82 16
LS Contribution 288.97 15.07 4.35 4.35
Total: -1.00 -30.18 288.97 -7.75 -37.92
By element:
Atomic # 1 Polarization: 2.70 SS G_CDS: -6.20 Total: -3.51 kcal
Atomic # 6 Polarization: -14.92 SS G_CDS: -0.68 Total: -15.61 kcal
Atomic # 7 Polarization: -37.17 SS G_CDS: -0.24 Total: -37.40 kcal
Atomic # 9 Polarization: -3.10 SS G_CDS: 0.04 Total: -3.06 kcal
Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal
Total LS contribution 4.35 Total: 4.35 kcal
Total: -30.18 -7.75 -37.92 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000711429519.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.384 kcal
(2) G-P(sol) polarization free energy of solvation -30.176 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.560 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.924 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.308 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds