Wall clock time and date at job start Sun Mar 29 2020 21:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46799 * 2 1 4 4 C 1.53000 * 109.47287 * 120.00423 * 2 1 3 5 5 C 1.50697 * 109.47079 * 184.00266 * 4 2 1 6 6 H 1.08002 * 120.00148 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99918 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99961 * 359.72320 * 7 5 4 9 9 Si 1.86797 * 120.00029 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47322 * 59.99967 * 9 7 5 11 11 H 1.48505 * 109.47171 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47348 * 300.00116 * 9 7 5 13 13 N 1.46901 * 109.47183 * 240.00371 * 2 1 3 14 14 C 1.46847 * 110.99761 * 306.40255 * 13 2 1 15 15 C 1.53039 * 109.52368 * 185.83897 * 14 13 2 16 16 C 1.53118 * 109.27986 * 300.82044 * 15 14 13 17 17 C 1.53123 * 109.16148 * 57.64883 * 16 15 14 18 18 H 1.09004 * 109.50107 * 62.29148 * 17 16 15 19 19 C 1.52998 * 109.50410 * 182.40543 * 17 16 15 20 20 F 1.39898 * 109.47249 * 184.80102 * 19 17 16 21 21 C 1.46850 * 110.99940 * 70.60920 * 13 2 1 22 22 H 1.08996 * 109.46912 * 59.99617 * 1 2 3 23 23 H 1.08997 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46750 * 299.99891 * 1 2 3 25 25 H 1.08997 * 109.47056 * 63.99869 * 4 2 1 26 26 H 1.09004 * 109.46790 * 304.00348 * 4 2 1 27 27 H 0.96997 * 119.99963 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.46395 * 305.84906 * 14 13 2 29 29 H 1.08998 * 109.46515 * 65.82207 * 14 13 2 30 30 H 1.09000 * 109.50647 * 180.87511 * 15 14 13 31 31 H 1.09004 * 109.50370 * 60.75579 * 15 14 13 32 32 H 1.09001 * 109.52353 * 297.75183 * 16 15 14 33 33 H 1.08999 * 109.57823 * 177.59057 * 16 15 14 34 34 H 1.08993 * 109.47432 * 304.81000 * 19 17 16 35 35 H 1.09000 * 109.46803 * 64.80928 * 19 17 16 36 36 H 1.09003 * 109.46427 * 294.17384 * 21 13 2 37 37 H 1.08991 * 109.46340 * 54.15752 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5438 -0.6360 1.2997 6 1 4.0819 -0.1193 0.5187 7 6 4.2326 -1.2175 2.3430 8 7 3.5769 -1.8420 3.2968 9 14 6.0964 -1.1111 2.4060 10 1 6.5096 0.3144 2.4538 11 1 6.5914 -1.8103 3.6191 12 1 6.6701 -1.7524 1.1957 13 7 2.0197 -0.6924 -1.1995 14 6 1.4280 -2.0317 -1.3124 15 6 2.0676 -2.7760 -2.4867 16 6 1.8328 -1.9836 -3.7757 17 6 2.4156 -0.5769 -3.6141 18 1 3.4922 -0.6448 -3.4578 19 6 2.1324 0.2413 -4.8756 20 9 2.7583 1.4882 -4.7729 21 6 1.7660 0.1037 -2.4071 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.7364 -1.7676 1.2140 26 1 1.6193 -0.2506 2.1377 27 1 4.0615 -2.2507 4.0310 28 1 1.6058 -2.5861 -0.3909 29 1 0.3549 -1.9416 -1.4806 30 1 1.6172 -3.7643 -2.5798 31 1 3.1387 -2.8785 -2.3126 32 1 0.7626 -1.9142 -3.9708 33 1 2.3229 -2.4876 -4.6087 34 1 2.5183 -0.2884 -5.7465 35 1 1.0570 0.3824 -4.9832 36 1 0.6912 0.1836 -2.5703 37 1 2.1893 1.1000 -2.2808 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711429519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:26 Heat of formation + Delta-G solvation = -70.307784 kcal Electronic energy + Delta-G solvation = -16923.843215 eV Core-core repulsion = 14228.453450 eV Total energy + Delta-G solvation = -2695.389765 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.52055 -39.00087 -35.17483 -32.49665 -31.38095 -29.80139 -27.26922 -25.90065 -24.07662 -22.64392 -21.92908 -19.76905 -18.60578 -16.13621 -15.96536 -15.84917 -15.57572 -14.63257 -14.43337 -14.25538 -13.96025 -13.56871 -13.14676 -12.54191 -12.38379 -12.04085 -11.77341 -11.53900 -11.42389 -11.22908 -10.90175 -10.68451 -10.55703 -10.49655 -10.35726 -10.22396 -9.94895 -9.77718 -9.12282 -8.94010 -8.22435 -7.42446 -5.85813 -3.83252 3.43367 3.46610 3.50885 4.38056 4.59238 4.67956 4.85051 4.94514 5.01953 5.22332 5.46161 5.51102 5.62408 5.64570 5.75270 5.81311 5.84176 5.88076 5.97302 6.05567 6.10437 6.17886 6.29982 6.39366 6.48255 6.62067 6.68114 6.77305 7.02276 7.58020 7.71823 7.96242 8.06368 8.16029 8.61981 9.22647 9.78240 11.26226 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.025799 B = 0.007678 C = 0.007112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.043117 B = 3645.836115 C = 3936.243040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.031 3.969 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.509 5.509 14 C 0.055 3.945 15 C -0.115 4.115 16 C -0.110 4.110 17 C -0.119 4.119 18 H 0.091 0.909 19 C 0.068 3.932 20 F -0.219 7.219 21 C 0.060 3.940 22 H 0.038 0.962 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.019 0.981 26 H 0.018 0.982 27 H 0.257 0.743 28 H 0.088 0.912 29 H 0.022 0.978 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.024 0.976 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.658 0.559 -14.283 15.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.087 0.913 4 C -0.006 4.006 5 C -0.527 4.527 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.232 5.232 14 C -0.073 4.073 15 C -0.153 4.153 16 C -0.148 4.148 17 C -0.138 4.138 18 H 0.109 0.891 19 C 0.013 3.987 20 F -0.200 7.200 21 C -0.069 4.069 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.042 0.958 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.100 0.441 -14.058 14.961 hybrid contribution 0.157 0.145 0.040 0.217 sum -4.944 0.587 -14.019 14.876 Atomic orbital electron populations 1.22520 0.99841 1.01277 1.00597 1.21917 0.89998 0.98345 0.91847 0.91308 1.19190 0.96373 0.95277 0.89786 1.21141 0.91664 1.33264 1.06671 0.92181 1.25001 0.97982 0.95968 0.95952 1.69954 1.35218 1.37546 1.11912 0.86696 0.86443 0.78004 0.77021 1.20512 1.21694 1.20397 1.61990 1.58468 1.01750 1.00998 1.22094 0.94841 0.91106 0.99263 1.21564 1.02442 0.97536 0.93778 1.21516 1.00171 0.94661 0.98428 1.21821 1.02934 0.95147 0.93898 0.89054 1.22045 0.97328 0.80307 0.99055 1.92759 1.84858 1.44849 1.97523 1.22051 0.96982 0.97443 0.90393 0.94282 0.92847 0.92557 0.96321 0.96382 0.93308 0.89409 0.95946 0.92038 0.90786 0.92457 0.92097 0.91029 0.91283 0.95792 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 8.44 37.16 0.31 -2.89 16 2 C 0.09 1.79 2.26 -67.71 -0.15 1.64 16 3 H 0.07 1.47 7.98 -51.93 -0.41 1.05 16 4 C 0.03 0.79 4.37 -27.88 -0.12 0.66 16 5 C -0.49 -13.83 8.81 -34.44 -0.30 -14.13 16 6 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 8 N -0.91 -27.44 13.29 55.43 0.74 -26.71 16 9 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 N -0.51 -9.72 4.29 -226.69 -0.97 -10.70 16 14 C 0.05 0.96 4.53 -3.83 -0.02 0.94 16 15 C -0.12 -1.67 6.09 -26.65 -0.16 -1.84 16 16 C -0.11 -1.33 5.29 -26.61 -0.14 -1.47 16 17 C -0.12 -1.60 2.65 -90.54 -0.24 -1.84 16 18 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 19 C 0.07 0.76 6.91 37.16 0.26 1.02 16 20 F -0.22 -3.10 17.05 2.25 0.04 -3.06 16 21 C 0.06 0.96 4.33 -3.83 -0.02 0.94 16 22 H 0.04 0.61 6.84 -51.93 -0.35 0.25 16 23 H 0.05 0.92 6.45 -51.93 -0.34 0.58 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.02 0.50 6.28 -51.93 -0.33 0.18 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.09 1.78 6.17 -51.93 -0.32 1.46 16 29 H 0.02 0.37 6.57 -51.93 -0.34 0.02 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.02 0.36 6.90 -51.93 -0.36 0.00 16 37 H 0.07 1.23 7.82 -51.93 -0.41 0.82 16 LS Contribution 288.97 15.07 4.35 4.35 Total: -1.00 -30.18 288.97 -7.75 -37.92 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -6.20 Total: -3.51 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -0.68 Total: -15.61 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.24 Total: -37.40 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.04 Total: -3.06 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.18 -7.75 -37.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711429519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.384 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds