Wall clock time and date at job start Sun Mar 29 2020 21:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46799 * 2 1 4 4 C 1.53000 * 109.47287 * 120.00423 * 2 1 3 5 5 C 1.50697 * 109.47079 * 184.00266 * 4 2 1 6 6 H 1.08002 * 120.00148 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99918 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99961 * 359.72320 * 7 5 4 9 9 Si 1.86797 * 120.00029 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47322 * 59.99967 * 9 7 5 11 11 H 1.48505 * 109.47171 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47348 * 300.00116 * 9 7 5 13 13 N 1.46901 * 109.47183 * 240.00371 * 2 1 3 14 14 C 1.46847 * 110.99761 * 306.40255 * 13 2 1 15 15 C 1.53039 * 109.52368 * 185.83897 * 14 13 2 16 16 C 1.53118 * 109.27986 * 300.82044 * 15 14 13 17 17 C 1.53123 * 109.16148 * 57.64883 * 16 15 14 18 18 H 1.09004 * 109.50107 * 62.29148 * 17 16 15 19 19 C 1.52998 * 109.50410 * 182.40543 * 17 16 15 20 20 F 1.39898 * 109.47249 * 184.80102 * 19 17 16 21 21 C 1.46850 * 110.99940 * 70.60920 * 13 2 1 22 22 H 1.08996 * 109.46912 * 59.99617 * 1 2 3 23 23 H 1.08997 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46750 * 299.99891 * 1 2 3 25 25 H 1.08997 * 109.47056 * 63.99869 * 4 2 1 26 26 H 1.09004 * 109.46790 * 304.00348 * 4 2 1 27 27 H 0.96997 * 119.99963 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.46395 * 305.84906 * 14 13 2 29 29 H 1.08998 * 109.46515 * 65.82207 * 14 13 2 30 30 H 1.09000 * 109.50647 * 180.87511 * 15 14 13 31 31 H 1.09004 * 109.50370 * 60.75579 * 15 14 13 32 32 H 1.09001 * 109.52353 * 297.75183 * 16 15 14 33 33 H 1.08999 * 109.57823 * 177.59057 * 16 15 14 34 34 H 1.08993 * 109.47432 * 304.81000 * 19 17 16 35 35 H 1.09000 * 109.46803 * 64.80928 * 19 17 16 36 36 H 1.09003 * 109.46427 * 294.17384 * 21 13 2 37 37 H 1.08991 * 109.46340 * 54.15752 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5438 -0.6360 1.2997 6 1 4.0819 -0.1193 0.5187 7 6 4.2326 -1.2175 2.3430 8 7 3.5769 -1.8420 3.2968 9 14 6.0964 -1.1111 2.4060 10 1 6.5096 0.3144 2.4538 11 1 6.5914 -1.8103 3.6191 12 1 6.6701 -1.7524 1.1957 13 7 2.0197 -0.6924 -1.1995 14 6 1.4280 -2.0317 -1.3124 15 6 2.0676 -2.7760 -2.4867 16 6 1.8328 -1.9836 -3.7757 17 6 2.4156 -0.5769 -3.6141 18 1 3.4922 -0.6448 -3.4578 19 6 2.1324 0.2413 -4.8756 20 9 2.7583 1.4882 -4.7729 21 6 1.7660 0.1037 -2.4071 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.7364 -1.7676 1.2140 26 1 1.6193 -0.2506 2.1377 27 1 4.0615 -2.2507 4.0310 28 1 1.6058 -2.5861 -0.3909 29 1 0.3549 -1.9416 -1.4806 30 1 1.6172 -3.7643 -2.5798 31 1 3.1387 -2.8785 -2.3126 32 1 0.7626 -1.9142 -3.9708 33 1 2.3229 -2.4876 -4.6087 34 1 2.5183 -0.2884 -5.7465 35 1 1.0570 0.3824 -4.9832 36 1 0.6912 0.1836 -2.5703 37 1 2.1893 1.1000 -2.2808 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711429519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:26 Heat of formation + Delta-G solvation = -88.696205 kcal Electronic energy + Delta-G solvation = -16924.640597 eV Core-core repulsion = 14228.453450 eV Total energy + Delta-G solvation = -2696.187146 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.50094 -40.36245 -36.62712 -34.57562 -32.57475 -31.38750 -29.14211 -26.97046 -25.63967 -24.45578 -23.12763 -21.03170 -20.08946 -18.35180 -17.16879 -16.97962 -16.62614 -16.46405 -15.74292 -15.59973 -15.29495 -14.84363 -14.69434 -14.08781 -13.71718 -13.57996 -13.49796 -13.10826 -12.83868 -12.67884 -12.62878 -12.41831 -11.96853 -11.90293 -11.71342 -11.51014 -11.40204 -11.14987 -11.10000 -10.81594 -10.47493 -8.87360 -8.10681 -6.15314 1.40242 1.42903 1.50641 2.46546 3.06695 3.25321 3.65739 3.84246 3.87299 4.17371 4.18215 4.24904 4.32112 4.44213 4.48757 4.52811 4.57564 4.69791 4.76411 4.81001 4.89772 4.96198 5.10010 5.11396 5.21196 5.22101 5.28330 5.34729 5.51219 5.54747 5.69925 5.89359 6.33384 6.50713 6.55509 6.97936 7.50212 9.01191 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.025799 B = 0.007678 C = 0.007112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.043117 B = 3645.836115 C = 3936.243040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.093 3.907 3 H 0.057 0.943 4 C 0.038 3.962 5 C -0.500 4.500 6 H 0.054 0.946 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.955 3.045 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.533 5.533 14 C 0.057 3.943 15 C -0.113 4.113 16 C -0.101 4.101 17 C -0.117 4.117 18 H 0.067 0.933 19 C 0.068 3.932 20 F -0.238 7.238 21 C 0.061 3.939 22 H 0.064 0.936 23 H 0.054 0.946 24 H 0.055 0.945 25 H -0.002 1.002 26 H -0.010 1.010 27 H 0.259 0.741 28 H 0.047 0.953 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.042 0.958 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 0.513 -16.724 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.015 4.015 3 H 0.076 0.924 4 C 0.001 3.999 5 C -0.538 4.538 6 H 0.072 0.928 7 C -0.200 4.200 8 N -0.582 5.582 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.257 5.257 14 C -0.071 4.071 15 C -0.151 4.151 16 C -0.138 4.138 17 C -0.136 4.136 18 H 0.086 0.914 19 C 0.013 3.987 20 F -0.220 7.220 21 C -0.067 4.067 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.016 0.984 26 H 0.009 0.991 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.428 0.403 -16.517 17.390 hybrid contribution 0.241 0.151 0.823 0.870 sum -5.188 0.553 -15.694 16.538 Atomic orbital electron populations 1.22367 0.97082 1.01738 1.01888 1.21603 0.92182 0.96917 0.90802 0.92441 1.19035 0.95156 0.94364 0.91391 1.21434 0.93201 1.32832 1.06374 0.92807 1.25834 1.02857 0.95671 0.95642 1.70080 1.37070 1.38470 1.12553 0.85649 0.80668 0.78325 0.77239 1.19685 1.21066 1.19762 1.61865 1.59512 1.02748 1.01595 1.22046 0.96062 0.90125 0.98828 1.21554 1.00774 0.98771 0.94018 1.21477 1.01677 0.93121 0.97539 1.21793 1.01317 0.96521 0.93968 0.91438 1.22220 0.98769 0.79167 0.98507 1.92725 1.85393 1.46286 1.97574 1.22088 0.98175 0.96483 0.89944 0.91666 0.92740 0.92542 0.98366 0.99129 0.93224 0.93425 0.94269 0.89892 0.93148 0.90365 0.89381 0.88061 0.88962 0.94045 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.86 8.44 71.98 0.61 -5.26 16 2 C 0.09 3.93 2.26 44.92 0.10 4.03 16 3 H 0.06 2.51 7.98 -2.39 -0.02 2.49 16 4 C 0.04 2.01 4.37 29.85 0.13 2.14 16 5 C -0.50 -29.19 8.81 25.60 0.23 -28.97 16 6 H 0.05 3.14 7.74 -2.91 -0.02 3.12 16 7 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 8 N -0.94 -58.50 13.29 21.45 0.28 -58.22 16 9 Si 0.96 46.47 29.54 68.60 2.03 48.50 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 13 N -0.53 -20.40 4.29 -871.11 -3.74 -24.14 16 14 C 0.06 1.97 4.53 86.33 0.39 2.37 16 15 C -0.11 -3.11 6.09 30.65 0.19 -2.92 16 16 C -0.10 -2.06 5.29 30.67 0.16 -1.89 16 17 C -0.12 -2.87 2.65 -10.74 -0.03 -2.90 16 18 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 19 C 0.07 1.28 6.91 71.98 0.50 1.78 16 20 F -0.24 -6.27 17.05 44.97 0.77 -5.50 16 21 C 0.06 1.86 4.33 86.33 0.37 2.23 16 22 H 0.06 1.88 6.84 -2.39 -0.02 1.86 16 23 H 0.05 1.83 6.45 -2.39 -0.02 1.82 16 24 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.00 -0.11 6.28 -2.39 -0.02 -0.12 16 26 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 27 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 28 H 0.05 2.01 6.17 -2.39 -0.01 1.99 16 29 H 0.04 1.21 6.57 -2.39 -0.02 1.19 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.04 1.12 6.90 -2.39 -0.02 1.10 16 37 H 0.06 1.89 7.82 -2.39 -0.02 1.87 16 Total: -1.00 -67.16 288.97 3.47 -63.68 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.02 Total: 4.84 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 3.11 Total: -29.17 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -3.45 Total: -82.36 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.77 Total: -5.50 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -67.16 3.47 -63.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711429519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.015 kcal (2) G-P(sol) polarization free energy of solvation -67.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds