Wall clock time and date at job start Sun Mar 29 2020 21:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39722 * 119.57560 * 10.29464 * 3 2 1 5 5 C 1.36956 * 119.33655 * 180.02562 * 4 3 2 6 6 C 1.40285 * 118.51300 * 359.97438 * 5 4 3 7 7 C 1.47534 * 120.44723 * 180.02562 * 6 5 4 8 8 O 1.21620 * 120.00108 * 220.84835 * 7 6 5 9 9 N 1.34778 * 120.00362 * 40.84002 * 7 6 5 10 10 C 1.46503 * 119.99426 * 5.48637 * 9 7 6 11 11 C 1.36833 * 120.00649 * 185.47845 * 9 7 6 12 12 H 1.08004 * 119.99834 * 337.33735 * 11 9 7 13 13 C 1.39063 * 120.00113 * 157.32981 * 11 9 7 14 14 N 1.31350 * 120.00181 * 356.70196 * 13 11 9 15 15 Si 1.86799 * 119.99948 * 176.69832 * 13 11 9 16 16 H 1.48504 * 109.47255 * 60.00241 * 15 13 11 17 17 H 1.48495 * 109.47335 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47479 * 300.00327 * 15 13 11 19 19 C 1.39766 * 119.11286 * 359.97438 * 6 5 4 20 20 N 1.31496 * 120.56875 * 0.02613 * 19 6 5 21 21 H 4.51232 * 14.18026 * 0.02562 * 4 2 1 22 22 H 1.08000 * 120.33844 * 0.04605 * 4 3 2 23 23 H 1.08002 * 120.74366 * 179.97438 * 5 4 3 24 24 H 1.08991 * 109.47537 * 25.50013 * 10 9 7 25 25 H 1.08999 * 109.47455 * 145.50738 * 10 9 7 26 26 H 1.09009 * 109.46584 * 265.50500 * 10 9 7 27 27 H 0.96999 * 120.00148 * 179.97438 * 14 13 11 28 28 H 1.07999 * 119.71047 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2961 -1.1947 -0.2172 5 6 4.6657 -1.1885 -0.2156 6 6 5.3296 0.0274 0.0052 7 6 6.8039 0.0831 0.0151 8 8 7.3811 0.7663 0.8393 9 7 7.5112 -0.6232 -0.8889 10 6 6.8178 -1.3499 -1.9555 11 6 8.8767 -0.6615 -0.8109 12 1 9.4103 0.1229 -0.2946 13 6 9.5775 -1.7104 -1.3962 14 7 8.9262 -2.6976 -1.9676 15 14 11.4453 -1.7154 -1.3698 16 1 11.9206 -1.7073 0.0371 17 1 11.9468 -2.9342 -2.0541 18 1 11.9536 -0.5090 -2.0709 19 6 4.5758 1.1856 0.2145 20 7 3.2617 1.1389 0.2056 21 1 -1.0500 -0.0009 -0.0007 22 1 2.7551 -2.1142 -0.3849 23 1 5.2220 -2.0994 -0.3807 24 1 5.8554 -0.8772 -2.1510 25 1 7.4232 -1.3301 -2.8617 26 1 6.6590 -2.3833 -1.6471 27 1 9.4150 -3.4290 -2.3761 28 1 5.0770 2.1267 0.3858 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728863309.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:35 Heat of formation + Delta-G solvation = 72.152887 kcal Electronic energy + Delta-G solvation = -14954.277578 eV Core-core repulsion = 12358.742496 eV Total energy + Delta-G solvation = -2595.535082 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.16626 -38.12888 -34.87512 -33.74444 -32.59403 -31.51062 -30.31135 -26.53981 -25.41198 -23.73970 -23.17381 -19.81059 -19.24446 -17.18586 -16.57100 -15.97305 -15.95334 -15.04753 -14.31189 -14.00750 -13.96999 -13.70951 -13.07287 -12.95736 -12.09625 -11.73887 -11.57312 -11.25025 -11.11450 -10.93661 -10.81938 -10.51495 -10.44548 -9.58291 -9.44900 -9.13928 -8.69304 -8.40454 -7.87900 -6.46861 -4.01675 0.75301 1.51163 2.65407 2.86873 3.13768 3.17119 3.21167 3.80923 3.97418 4.03652 4.28579 4.68112 4.89904 5.01062 5.23461 5.28584 5.34563 5.50915 5.86769 6.00836 6.22689 6.27596 6.45344 6.79014 6.82692 7.13157 7.40334 7.43653 7.93367 8.08322 8.32350 9.01310 9.22660 9.79725 10.54036 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.058411 B = 0.006125 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.245870 B = 4570.032417 C = 4945.438233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.130 4.130 3 C 0.208 3.792 4 C -0.147 4.147 5 C -0.054 4.054 6 C -0.130 4.130 7 C 0.474 3.526 8 O -0.584 6.584 9 N -0.428 5.428 10 C 0.108 3.892 11 C -0.302 4.302 12 H 0.104 0.896 13 C 0.031 3.969 14 N -0.879 5.879 15 Si 0.935 3.065 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.137 3.863 20 N -0.472 5.472 21 H 0.227 0.773 22 H 0.138 0.862 23 H 0.149 0.851 24 H 0.027 0.973 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.271 0.729 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.473 -0.608 -1.009 10.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.130 4.130 3 C 0.072 3.928 4 C -0.167 4.167 5 C -0.080 4.080 6 C -0.135 4.135 7 C 0.262 3.738 8 O -0.470 6.470 9 N -0.144 5.144 10 C -0.035 4.035 11 C -0.430 4.430 12 H 0.121 0.879 13 C -0.173 4.173 14 N -0.518 5.518 15 Si 0.761 3.239 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.022 4.022 20 N -0.180 5.180 21 H 0.244 0.756 22 H 0.156 0.844 23 H 0.167 0.833 24 H 0.046 0.954 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.525 0.283 -0.618 10.547 hybrid contribution 1.141 -1.048 -0.295 1.577 sum -9.384 -0.765 -0.913 9.459 Atomic orbital electron populations 1.24810 0.95528 0.99233 0.98679 1.19441 0.91121 1.00971 1.01508 1.16647 0.87854 0.89732 0.98535 1.21643 0.94670 0.98421 1.02008 1.21723 0.93791 0.98691 0.93795 1.21488 0.96876 0.94780 1.00362 1.17668 0.84965 0.86854 0.84334 1.90642 1.70574 1.45083 1.40742 1.43531 1.06569 1.41578 1.22722 1.21804 0.93782 0.95752 0.92202 1.19733 0.80405 1.08012 1.34880 0.87865 1.25458 1.01134 0.94425 0.96258 1.69959 1.36283 1.09630 1.35919 0.85855 0.81425 0.77734 0.78907 1.19574 1.20775 1.19675 1.22864 0.87733 0.98253 0.93392 1.67762 1.10004 1.27458 1.12809 0.75621 0.84424 0.83322 0.95421 0.90609 0.91926 0.91828 0.81559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 19.25 29.55 0.57 -1.21 15 2 C -0.13 -1.86 13.43 -38.84 -0.52 -2.38 15 3 C 0.21 3.43 6.59 -84.90 -0.56 2.87 15 4 C -0.15 -2.23 9.72 -39.49 -0.38 -2.61 15 5 C -0.05 -0.93 7.77 -39.28 -0.31 -1.23 15 6 C -0.13 -2.60 4.97 -104.77 -0.52 -3.12 15 7 C 0.47 11.62 7.25 -12.47 -0.09 11.53 15 8 O -0.58 -16.23 16.63 5.26 0.09 -16.14 15 9 N -0.43 -10.75 3.02 -123.39 -0.37 -11.12 15 10 C 0.11 2.34 7.18 59.85 0.43 2.77 15 11 C -0.30 -8.17 9.34 -15.01 -0.14 -8.31 15 12 H 0.10 2.91 7.34 -52.48 -0.39 2.52 15 13 C 0.03 0.79 5.28 -17.45 -0.09 0.70 15 14 N -0.88 -22.16 10.22 55.50 0.57 -21.59 15 15 Si 0.93 20.03 29.55 -169.99 -5.02 15.01 15 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 17 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 19 C 0.14 2.57 10.82 -17.12 -0.19 2.39 15 20 N -0.47 -8.57 10.27 -10.75 -0.11 -8.68 15 21 H 0.23 1.37 7.80 -54.09 -0.42 0.95 15 22 H 0.14 1.64 8.06 -52.49 -0.42 1.21 15 23 H 0.15 2.49 6.17 -52.49 -0.32 2.17 15 24 H 0.03 0.52 5.98 -51.93 -0.31 0.21 15 25 H 0.08 1.74 6.99 -51.93 -0.36 1.38 15 26 H 0.06 1.36 6.52 -51.92 -0.34 1.02 15 27 H 0.27 6.48 8.31 -40.82 -0.34 6.14 15 28 H 0.17 2.96 8.06 -52.49 -0.42 2.54 15 LS Contribution 257.84 15.07 3.89 3.89 Total: -1.00 -30.50 257.84 -4.89 -35.39 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -2.12 Total: 1.84 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -1.80 Total: 1.39 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.08 Total: -41.38 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.09 Total: -16.14 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.50 -4.89 -35.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728863309.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.548 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds