Wall clock time and date at job start Sun Mar 29 2020 21:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39722 * 119.57560 * 10.29464 * 3 2 1 5 5 C 1.36956 * 119.33655 * 180.02562 * 4 3 2 6 6 C 1.40285 * 118.51300 * 359.97438 * 5 4 3 7 7 C 1.47534 * 120.44723 * 180.02562 * 6 5 4 8 8 O 1.21620 * 120.00108 * 220.84835 * 7 6 5 9 9 N 1.34778 * 120.00362 * 40.84002 * 7 6 5 10 10 C 1.46503 * 119.99426 * 5.48637 * 9 7 6 11 11 C 1.36833 * 120.00649 * 185.47845 * 9 7 6 12 12 H 1.08004 * 119.99834 * 337.33735 * 11 9 7 13 13 C 1.39063 * 120.00113 * 157.32981 * 11 9 7 14 14 N 1.31350 * 120.00181 * 356.70196 * 13 11 9 15 15 Si 1.86799 * 119.99948 * 176.69832 * 13 11 9 16 16 H 1.48504 * 109.47255 * 60.00241 * 15 13 11 17 17 H 1.48495 * 109.47335 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47479 * 300.00327 * 15 13 11 19 19 C 1.39766 * 119.11286 * 359.97438 * 6 5 4 20 20 N 1.31496 * 120.56875 * 0.02613 * 19 6 5 21 21 H 4.51232 * 14.18026 * 0.02562 * 4 2 1 22 22 H 1.08000 * 120.33844 * 0.04605 * 4 3 2 23 23 H 1.08002 * 120.74366 * 179.97438 * 5 4 3 24 24 H 1.08991 * 109.47537 * 25.50013 * 10 9 7 25 25 H 1.08999 * 109.47455 * 145.50738 * 10 9 7 26 26 H 1.09009 * 109.46584 * 265.50500 * 10 9 7 27 27 H 0.96999 * 120.00148 * 179.97438 * 14 13 11 28 28 H 1.07999 * 119.71047 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2961 -1.1947 -0.2172 5 6 4.6657 -1.1885 -0.2156 6 6 5.3296 0.0274 0.0052 7 6 6.8039 0.0831 0.0151 8 8 7.3811 0.7663 0.8393 9 7 7.5112 -0.6232 -0.8889 10 6 6.8178 -1.3499 -1.9555 11 6 8.8767 -0.6615 -0.8109 12 1 9.4103 0.1229 -0.2946 13 6 9.5775 -1.7104 -1.3962 14 7 8.9262 -2.6976 -1.9676 15 14 11.4453 -1.7154 -1.3698 16 1 11.9206 -1.7073 0.0371 17 1 11.9468 -2.9342 -2.0541 18 1 11.9536 -0.5090 -2.0709 19 6 4.5758 1.1856 0.2145 20 7 3.2617 1.1389 0.2056 21 1 -1.0500 -0.0009 -0.0007 22 1 2.7551 -2.1142 -0.3849 23 1 5.2220 -2.0994 -0.3807 24 1 5.8554 -0.8772 -2.1510 25 1 7.4232 -1.3301 -2.8617 26 1 6.6590 -2.3833 -1.6471 27 1 9.4150 -3.4290 -2.3761 28 1 5.0770 2.1267 0.3858 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728863309.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:35 Heat of formation + Delta-G solvation = 52.314124 kcal Electronic energy + Delta-G solvation = -14955.137851 eV Core-core repulsion = 12358.742496 eV Total energy + Delta-G solvation = -2596.395355 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.64288 -39.89323 -36.82556 -34.92608 -34.10743 -33.24564 -31.62837 -28.38423 -27.09579 -25.31048 -24.58091 -21.51236 -20.39167 -19.10037 -18.29066 -17.46181 -17.14716 -16.81539 -16.02043 -15.72851 -15.36049 -15.16979 -14.70260 -14.44957 -13.82415 -13.38147 -13.32579 -13.03355 -12.70741 -12.54401 -12.18834 -12.12163 -11.81593 -11.08918 -10.95215 -10.89150 -10.44908 -9.88199 -9.76406 -8.39504 -6.05342 -0.57420 0.16114 1.37084 1.41248 1.51412 1.66762 1.68206 2.17076 2.23131 2.84611 2.93528 3.02866 3.07629 3.63814 3.79407 3.86425 4.05066 4.16002 4.52910 4.59424 4.79374 4.98898 5.04399 5.10051 5.32906 5.38008 5.51854 5.99076 6.38098 6.50358 6.71748 7.05084 7.31015 7.87426 8.59862 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.058411 B = 0.006125 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.245870 B = 4570.032417 C = 4945.438233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.211 4.211 3 C 0.219 3.781 4 C -0.136 4.136 5 C -0.045 4.045 6 C -0.158 4.158 7 C 0.470 3.530 8 O -0.630 6.630 9 N -0.442 5.442 10 C 0.122 3.878 11 C -0.347 4.347 12 H 0.077 0.923 13 C 0.002 3.998 14 N -0.888 5.888 15 Si 0.995 3.005 16 H -0.276 1.276 17 H -0.266 1.266 18 H -0.268 1.268 19 C 0.138 3.862 20 N -0.490 5.490 21 H 0.276 0.724 22 H 0.178 0.822 23 H 0.153 0.847 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.278 0.722 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.124 -1.848 -1.618 13.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.212 4.212 3 C 0.083 3.917 4 C -0.156 4.156 5 C -0.071 4.071 6 C -0.164 4.164 7 C 0.260 3.740 8 O -0.519 6.519 9 N -0.158 5.158 10 C -0.021 4.021 11 C -0.475 4.475 12 H 0.095 0.905 13 C -0.200 4.200 14 N -0.526 5.526 15 Si 0.818 3.182 16 H -0.201 1.201 17 H -0.190 1.190 18 H -0.193 1.193 19 C -0.021 4.021 20 N -0.198 5.198 21 H 0.292 0.708 22 H 0.195 0.805 23 H 0.170 0.830 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -13.201 -0.975 -1.254 13.296 hybrid contribution 1.643 -0.660 -0.086 1.773 sum -11.558 -1.635 -1.341 11.749 Atomic orbital electron populations 1.25954 0.96130 0.95029 0.93537 1.19533 0.91255 1.04892 1.05508 1.17152 0.89500 0.89402 0.95669 1.21965 0.93532 0.99627 1.00457 1.21766 0.94837 0.97520 0.93017 1.21103 0.94124 0.96736 1.04417 1.18319 0.86863 0.85562 0.83305 1.90581 1.72253 1.46714 1.42378 1.43720 1.06329 1.42132 1.23570 1.21712 0.94212 0.95642 0.90489 1.19684 0.81726 1.08861 1.37197 0.90524 1.26168 1.05108 0.93595 0.95173 1.70011 1.37676 1.09607 1.35314 0.84966 0.76306 0.78323 0.78587 1.20108 1.19012 1.19307 1.22786 0.88232 0.97900 0.93196 1.67832 1.09249 1.28779 1.13974 0.70796 0.80506 0.82959 0.92858 0.92217 0.91919 0.91186 0.81914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.43 19.25 74.32 1.43 0.00 15 2 C -0.21 -5.32 13.43 30.02 0.40 -4.92 15 3 C 0.22 6.79 6.59 40.58 0.27 7.06 15 4 C -0.14 -3.79 9.72 22.33 0.22 -3.58 15 5 C -0.05 -1.53 7.77 22.47 0.17 -1.35 15 6 C -0.16 -6.51 4.97 -19.96 -0.10 -6.61 15 7 C 0.47 24.16 7.25 86.69 0.63 24.79 15 8 O -0.63 -37.15 16.63 -4.10 -0.07 -37.22 15 9 N -0.44 -23.05 3.02 -662.54 -2.00 -25.05 15 10 C 0.12 5.36 7.18 127.77 0.92 6.28 15 11 C -0.35 -19.57 9.34 84.11 0.79 -18.78 15 12 H 0.08 4.61 7.34 -2.91 -0.02 4.59 15 13 C 0.00 0.13 5.28 84.96 0.45 0.58 15 14 N -0.89 -44.78 10.22 21.68 0.22 -44.56 15 15 Si 1.00 41.39 29.55 68.60 2.03 43.42 15 16 H -0.28 -11.63 7.11 99.48 0.71 -10.93 15 17 H -0.27 -10.27 7.11 99.48 0.71 -9.56 15 18 H -0.27 -10.94 7.11 99.48 0.71 -10.24 15 19 C 0.14 5.29 10.82 85.11 0.92 6.21 15 20 N -0.49 -17.55 10.27 -187.92 -1.93 -19.48 15 21 H 0.28 1.27 7.80 -4.42 -0.03 1.23 15 22 H 0.18 3.48 8.06 -2.91 -0.02 3.46 15 23 H 0.15 4.98 6.17 -2.91 -0.02 4.96 15 24 H 0.05 2.02 5.98 -2.39 -0.01 2.01 15 25 H 0.06 2.78 6.99 -2.39 -0.02 2.77 15 26 H 0.06 2.72 6.52 -2.38 -0.02 2.70 15 27 H 0.28 13.06 8.31 -92.71 -0.77 12.29 15 28 H 0.16 6.16 8.06 -2.91 -0.02 6.13 15 Total: -1.00 -69.31 257.84 5.53 -63.78 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.18 Total: 9.42 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 6.09 Total: 9.68 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -3.71 Total: -89.08 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.07 Total: -37.22 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -69.31 5.53 -63.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728863309.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.098 kcal (2) G-P(sol) polarization free energy of solvation -69.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds