Wall clock time and date at job start Sun Mar 29 2020 21:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.40040 * 120.45410 * 83.29168 * 3 2 1 5 5 C 1.38155 * 118.38010 * 179.97438 * 4 3 2 6 6 C 1.39606 * 119.19766 * 0.02562 * 5 4 3 7 7 C 1.47808 * 119.57291 * 179.97438 * 6 5 4 8 8 O 1.21600 * 120.00252 * 346.14906 * 7 6 5 9 9 N 1.34779 * 119.99769 * 166.13858 * 7 6 5 10 10 C 1.46501 * 119.99935 * 187.80410 * 9 7 6 11 11 C 1.36750 * 120.00033 * 7.81468 * 9 7 6 12 12 H 1.07995 * 119.99712 * 319.25675 * 11 9 7 13 13 C 1.39125 * 119.99984 * 139.26196 * 11 9 7 14 14 N 1.31313 * 119.99901 * 352.61707 * 13 11 9 15 15 Si 1.86799 * 119.99802 * 172.62181 * 13 11 9 16 16 H 1.48500 * 109.47076 * 89.99578 * 15 13 11 17 17 H 1.48500 * 109.47011 * 210.00031 * 15 13 11 18 18 H 1.48505 * 109.47042 * 329.99625 * 15 13 11 19 19 N 1.32894 * 120.85008 * 0.02562 * 6 5 4 20 20 C 1.31295 * 121.77229 * 359.97438 * 19 6 5 21 21 H 4.52969 * 13.94992 * 0.02562 * 4 2 1 22 22 H 1.08002 * 120.80963 * 0.25535 * 4 3 2 23 23 H 1.07992 * 120.39666 * 179.97438 * 5 4 3 24 24 H 1.08998 * 109.47182 * 354.20342 * 10 9 7 25 25 H 1.09007 * 109.47064 * 114.20202 * 10 9 7 26 26 H 1.09000 * 109.47597 * 234.19975 * 10 9 7 27 27 H 0.96997 * 119.99725 * 179.97438 * 14 13 11 28 28 H 1.08008 * 119.64592 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3158 -0.1401 -1.1989 5 6 4.6965 -0.1331 -1.1493 6 6 5.3329 0.0123 0.0847 7 6 6.8096 0.0204 0.1474 8 8 7.4610 -0.3460 -0.8118 9 7 7.4342 0.4340 1.2678 10 6 8.8892 0.6053 1.2746 11 6 6.7099 0.6936 2.3983 12 1 5.7604 1.2030 2.3261 13 6 7.1963 0.3014 3.6414 14 7 8.2752 -0.4429 3.7193 15 14 6.3143 0.8338 5.1997 16 1 5.2888 -0.1786 5.5584 17 1 7.2964 0.9575 6.3067 18 1 5.6566 2.1457 4.9726 19 7 4.6281 0.1426 1.2038 20 6 3.3151 0.1408 1.1981 21 1 -1.0501 0.0005 -0.0002 22 1 2.7966 -0.2468 -2.1399 23 1 5.2763 -0.2396 -2.0541 24 1 9.3006 0.2558 0.3277 25 1 9.1302 1.6599 1.4084 26 1 9.3193 0.0278 2.0929 27 1 8.6145 -0.7160 4.5860 28 1 2.7767 0.2495 2.1280 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728863344.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:33 Heat of formation + Delta-G solvation = 78.096487 kcal Electronic energy + Delta-G solvation = -15138.795170 eV Core-core repulsion = 12543.517823 eV Total energy + Delta-G solvation = -2595.277348 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.92250 -37.92413 -34.82842 -33.99632 -31.83283 -31.39215 -30.24540 -26.59460 -25.11027 -23.35848 -23.03232 -19.64301 -18.85003 -17.98583 -16.34752 -15.64843 -15.42678 -14.82890 -14.21272 -14.13497 -13.97666 -13.24553 -13.02600 -12.67102 -12.09338 -11.85314 -11.28214 -11.18082 -11.07132 -10.99295 -10.68372 -10.39350 -10.32521 -9.38360 -9.26266 -8.99263 -8.40137 -8.28222 -7.41943 -6.23742 -3.97907 0.85140 1.69244 2.76744 2.99950 3.20810 3.24792 3.28101 3.86358 4.13395 4.29024 4.55154 4.61585 4.92167 5.10874 5.18530 5.53765 5.57772 5.73335 6.07761 6.18947 6.40861 6.47313 6.71548 6.84360 7.03332 7.37078 7.54075 7.73063 7.93179 8.39627 8.54936 9.10441 9.42175 9.85492 10.69810 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.024221 B = 0.009621 C = 0.007038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.766439 B = 2909.567549 C = 3977.281383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 C -0.062 4.062 4 C -0.065 4.065 5 C -0.133 4.133 6 C 0.128 3.872 7 C 0.494 3.506 8 O -0.607 6.607 9 N -0.406 5.406 10 C 0.065 3.935 11 C -0.302 4.302 12 H 0.123 0.877 13 C 0.036 3.964 14 N -0.872 5.872 15 Si 0.928 3.072 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.269 1.269 19 N -0.413 5.413 20 C 0.114 3.886 21 H 0.222 0.778 22 H 0.134 0.866 23 H 0.145 0.855 24 H 0.054 0.946 25 H 0.035 0.965 26 H 0.110 0.890 27 H 0.269 0.731 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.246 2.003 -3.348 10.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.129 4.129 3 C -0.066 4.066 4 C -0.090 4.090 5 C -0.154 4.154 6 C -0.010 4.010 7 C 0.282 3.718 8 O -0.495 6.495 9 N -0.120 5.120 10 C -0.078 4.078 11 C -0.431 4.431 12 H 0.139 0.861 13 C -0.169 4.169 14 N -0.510 5.510 15 Si 0.755 3.245 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.193 1.193 19 N -0.123 5.123 20 C -0.046 4.046 21 H 0.239 0.761 22 H 0.152 0.848 23 H 0.163 0.837 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.128 0.872 27 H 0.080 0.920 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.217 1.855 -2.833 9.820 hybrid contribution -1.116 0.075 0.143 1.127 sum -10.333 1.930 -2.690 10.851 Atomic orbital electron populations 1.24759 0.95614 1.00861 0.99995 1.19940 0.91748 1.00481 1.00777 1.17159 0.87427 1.06345 0.95633 1.21441 0.93608 0.96737 0.97215 1.21985 0.94025 0.99909 0.99467 1.21626 0.95660 0.95111 0.88608 1.17898 0.85356 0.83112 0.85391 1.90626 1.65673 1.54234 1.38946 1.43435 1.06649 1.52503 1.09427 1.22009 0.81902 1.00301 1.03574 1.20295 1.04642 1.35210 0.82993 0.86051 1.25561 0.96288 0.95157 0.99853 1.69634 1.22278 1.33439 1.25622 0.85910 0.78953 0.79237 0.80429 1.20132 1.21060 1.19320 1.68827 1.05753 1.09119 1.28574 1.23278 0.90593 0.94378 0.96363 0.76086 0.84820 0.83743 0.92688 0.94640 0.87193 0.92017 0.82699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.19 19.25 29.55 0.57 -1.62 15 2 C -0.13 -1.82 13.28 -38.83 -0.52 -2.33 15 3 C -0.06 -1.01 5.75 -106.66 -0.61 -1.62 15 4 C -0.06 -1.01 9.89 -38.94 -0.39 -1.39 15 5 C -0.13 -2.45 9.61 -39.10 -0.38 -2.82 15 6 C 0.13 2.86 6.62 -82.98 -0.55 2.31 15 7 C 0.49 12.76 7.56 -12.35 -0.09 12.66 15 8 O -0.61 -16.50 15.75 5.28 0.08 -16.42 15 9 N -0.41 -10.76 2.92 -123.30 -0.36 -11.12 15 10 C 0.06 1.61 10.15 59.85 0.61 2.21 15 11 C -0.30 -7.91 7.84 -15.03 -0.12 -8.03 15 12 H 0.12 3.10 5.57 -52.49 -0.29 2.81 15 13 C 0.04 0.93 5.30 -17.44 -0.09 0.83 15 14 N -0.87 -23.41 10.87 55.50 0.60 -22.80 15 15 Si 0.93 20.08 29.56 -169.99 -5.02 15.06 15 16 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 19 N -0.41 -8.95 6.31 -9.50 -0.06 -9.01 15 20 C 0.11 2.03 10.91 -17.15 -0.19 1.85 15 21 H 0.22 1.51 7.80 -54.09 -0.42 1.09 15 22 H 0.13 1.65 8.06 -52.49 -0.42 1.22 15 23 H 0.14 2.53 7.69 -52.49 -0.40 2.12 15 24 H 0.05 1.33 6.92 -51.93 -0.36 0.97 15 25 H 0.03 0.81 8.14 -51.93 -0.42 0.38 15 26 H 0.11 2.87 5.47 -51.93 -0.28 2.58 15 27 H 0.27 6.81 8.31 -40.82 -0.34 6.47 15 28 H 0.16 2.37 8.06 -52.48 -0.42 1.95 15 LS Contribution 258.92 15.07 3.90 3.90 Total: -1.00 -30.48 258.92 -4.77 -35.26 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -2.16 Total: 3.09 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.75 Total: 2.04 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.18 Total: -42.93 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.08 Total: -16.42 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.48 -4.77 -35.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728863344.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.353 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds